Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g33340 |
| malus_domestica | MD08G1213200.v1.1 |
| prunus_persica | Prupe.1G544500_v2.0.a1 |
| pyrus_communis | pycom08g18310 |
| rosa_chinensis | RchiOBHm_Chr7g0232061 |
| rosa_laevigata | RLG00000001396 |
| rosa_multiflora | Rmu_sc0004618.1_g000017 Rmu_sc0009837.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00228850 |
| rosa_rugosa | Rorug07G0268800 |
| rosa_samantha | Rh7AG423200 Rh7BG397400 Rh7CG443600 Rh7DG415500 |
| rosa_wichuraiana | Rw7G035010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 896 |
| Acc36I | ACCTGC | 2 cut(s) | 550, 1470 |
| Acc65I | GGTACC | 1 cut(s) | 538 |
| AccB1I | GGYRCC | 1 cut(s) | 538 |
| AccII | CGCG | 2 cut(s) | 276, 1194 |
| AciI | CCGC | 3 cut(s) | 326, 634, 1237 |
| AcsI | RAATTY | 6 cut(s) | 223, 469, 526, 690, 925, 1031 |
| AcuI | CTGAAG | 2 cut(s) | 644, 1059 |
| AfaI | GTAC | 3 cut(s) | 54, 540, 1310 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 201, 507 |
| AflIII | ACRYGT | 1 cut(s) | 274 |
| AjnI | CCWGG | 2 cut(s) | 124, 328 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1466, 1498 |
| AluBI | AGCT | 8 cut(s) | 164, 335, 612, 938, 1014, 1043, 1277, 1314 |
| AluI | AGCT | 8 cut(s) | 164, 335, 612, 938, 1014, 1043, 1277, 1314 |
| Alw21I | GWGCWC | 1 cut(s) | 804 |
| Alw26I | GTCTC | 3 cut(s) | 109, 392, 701 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 164, 1502 |
| Ama87I | CYCGRG | 1 cut(s) | 507 |
| ApeKI | GCWGC | 4 cut(s) | 164, 1208, 1277, 1463 |
| ApoI | RAATTY | 6 cut(s) | 223, 469, 526, 690, 925, 1031 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 87, 119 |
| AseI | ATTAAT | 1 cut(s) | 1383 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 8 |
| Asp718I | GGTACC | 1 cut(s) | 538 |
| AspLEI | GCGC | 1 cut(s) | 298 |
| AsuHPI | GGTGA | 3 cut(s) | 455, 653, 691 |
| AsuII | TTCGAA | 1 cut(s) | 312 |
| AvaI | CYCGRG | 1 cut(s) | 507 |
| BanI | GGYRCC | 1 cut(s) | 538 |
| BanII | GRGCYC | 1 cut(s) | 117 |
| BauI | CACGAG | 1 cut(s) | 110 |
| Bbv12I | GWGCWC | 1 cut(s) | 804 |
| BbvI | GCAGC | 4 cut(s) | 151, 1195, 1264, 1450 |
| BccI | CCATC | 3 cut(s) | 220, 374, 1082 |
| BceAI | ACGGC | 1 cut(s) | 1448 |
| BciT130I | CCWGG | 2 cut(s) | 126, 330 |
| BclI | TGATCA | 1 cut(s) | 432 |
| BcoDI | GTCTC | 3 cut(s) | 109, 392, 701 |
| BfaI | CTAG | 6 cut(s) | 101, 965, 1067, 1296, 1488, 1493 |
| BfmI | CTRYAG | 1 cut(s) | 1464 |
| BfuAI | ACCTGC | 2 cut(s) | 550, 1470 |
| BisI | GCNGC | 5 cut(s) | 165, 326, 1209, 1278, 1464 |
| BlsI | GCNGC | 5 cut(s) | 166, 327, 1210, 1279, 1465 |
| Bme1390I | CCNGG | 2 cut(s) | 126, 330 |
| BmeT110I | CYCGRG | 1 cut(s) | 507 |
| BmiI | GGNNCC | 2 cut(s) | 343, 540 |
| BmrFI | CCNGG | 2 cut(s) | 126, 330 |
| BmsI | GCATC | 2 cut(s) | 268, 973 |
| BpmI | CTGGAG | 1 cut(s) | 816 |
| Bpu14I | TTCGAA | 1 cut(s) | 312 |
| BpuEI | CTTGAG | 1 cut(s) | 239 |
| Bsa29I | ATCGAT | 1 cut(s) | 358 |
| BsaWI | WCCGGW | 1 cut(s) | 391 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 201, 507 |
| Bse1I | ACTGG | 1 cut(s) | 799 |
| Bse3DI | GCAATG | 1 cut(s) | 660 |
| BseBI | CCWGG | 2 cut(s) | 126, 330 |
| BseCI | ATCGAT | 1 cut(s) | 358 |
| BseGI | GGATG | 1 cut(s) | 400 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 201, 507 |
| BseMI | GCAATG | 1 cut(s) | 660 |
| BseMII | CTCAG | 3 cut(s) | 170, 840, 1021 |
| BseNI | ACTGG | 1 cut(s) | 799 |
| BseRI | GAGGAG | 2 cut(s) | 111, 163 |
| BseXI | GCAGC | 4 cut(s) | 151, 1195, 1264, 1450 |
| Bsh1236I | CGCG | 2 cut(s) | 276, 1194 |
| Bsh1285I | CGRYCG | 1 cut(s) | 392 |
| BshNI | GGYRCC | 1 cut(s) | 538 |
| BshVI | ATCGAT | 1 cut(s) | 358 |
| BsiEI | CGRYCG | 1 cut(s) | 392 |
| BsiHKAI | GWGCWC | 1 cut(s) | 804 |
| BsiHKCI | CYCGRG | 1 cut(s) | 507 |
| BsiSI | CCGG | 1 cut(s) | 392 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 201, 507 |
| BsmAI | GTCTC | 3 cut(s) | 109, 392, 701 |
| BsmBI | CGTCTC | 1 cut(s) | 701 |
| BsoBI | CYCGRG | 1 cut(s) | 507 |
| Bsp119I | TTCGAA | 1 cut(s) | 312 |
| Bsp1286I | GDGCHC | 2 cut(s) | 117, 804 |
| Bsp1407I | TGTACA | 1 cut(s) | 1308 |
| Bsp143I | GATC | 1 cut(s) | 432 |
| BspACI | CCGC | 3 cut(s) | 326, 634, 1237 |
| BspCNI | CTCAG | 3 cut(s) | 171, 841, 1020 |
| BspDI | ATCGAT | 1 cut(s) | 358 |
| BspFNI | CGCG | 2 cut(s) | 276, 1194 |
| BspLI | GGNNCC | 2 cut(s) | 343, 540 |
| BspMAI | CTGCAG | 1 cut(s) | 1468 |
| BspMI | ACCTGC | 2 cut(s) | 550, 1470 |
| BspT104I | TTCGAA | 1 cut(s) | 312 |
| BspT107I | GGYRCC | 1 cut(s) | 538 |
| BsrDI | GCAATG | 1 cut(s) | 660 |
| BsrGI | TGTACA | 1 cut(s) | 1308 |
| BsrI | ACTGG | 1 cut(s) | 799 |
| BssMI | GATC | 1 cut(s) | 432 |
| BssSI | CACGAG | 1 cut(s) | 110 |
| Bst2BI | CACGAG | 1 cut(s) | 110 |
| Bst2UI | CCWGG | 2 cut(s) | 126, 330 |
| Bst4CI | ACNGT | 3 cut(s) | 1053, 1155, 1289 |
| Bst6I | CTCTTC | 1 cut(s) | 872 |
| BstAUI | TGTACA | 1 cut(s) | 1308 |
| BstBI | TTCGAA | 1 cut(s) | 312 |
| BstC8I | GCNNGC | 2 cut(s) | 1316, 1320 |
| BstDEI | CTNAG | 3 cut(s) | 179, 849, 1007 |
| BstF5I | GGATG | 1 cut(s) | 400 |
| BstFNI | CGCG | 2 cut(s) | 276, 1194 |
| BstHHI | GCGC | 1 cut(s) | 298 |
| BstKTI | GATC | 1 cut(s) | 435 |
| BstMAI | GTCTC | 3 cut(s) | 109, 392, 701 |
| BstMBI | GATC | 1 cut(s) | 432 |
| BstMCI | CGRYCG | 1 cut(s) | 392 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1324 |
| BstNI | CCWGG | 2 cut(s) | 126, 330 |
| BstNSI | RCATGY | 1 cut(s) | 1208 |
| BstSCI | CCNGG | 2 cut(s) | 124, 328 |
| BstSFI | CTRYAG | 1 cut(s) | 1464 |
| BstUI | CGCG | 2 cut(s) | 276, 1194 |
| BstV1I | GCAGC | 4 cut(s) | 151, 1195, 1264, 1450 |
| Bsu15I | ATCGAT | 1 cut(s) | 358 |
| BsuTUI | ATCGAT | 1 cut(s) | 358 |
| BtsCI | GGATG | 1 cut(s) | 400 |
| BtsI | GCAGTG | 1 cut(s) | 291 |
| BtsIMutI | CAGTG | 3 cut(s) | 291, 1311, 1416 |
| BveI | ACCTGC | 2 cut(s) | 550, 1470 |
| Cac8I | GCNNGC | 2 cut(s) | 1316, 1320 |
| CaiI | CAGNNNCTG | 2 cut(s) | 164, 1502 |
| CfoI | GCGC | 1 cut(s) | 298 |
| ClaI | ATCGAT | 1 cut(s) | 358 |
| CseI | GACGC | 1 cut(s) | 282 |
| Csp6I | GTAC | 3 cut(s) | 53, 539, 1309 |
| CviAII | CATG | 2 cut(s) | 475, 1205 |
| CviQI | GTAC | 3 cut(s) | 53, 539, 1309 |
| DdeI | CTNAG | 3 cut(s) | 179, 849, 1007 |
| DpnI | GATC | 1 cut(s) | 434 |
| DpnII | GATC | 1 cut(s) | 432 |
| DraI | TTTAAA | 1 cut(s) | 1126 |
| Eam1104I | CTCTTC | 1 cut(s) | 872 |
| EarI | CTCTTC | 1 cut(s) | 872 |
| Eco24I | GRGCYC | 1 cut(s) | 117 |
| Eco57I | CTGAAG | 2 cut(s) | 644, 1059 |
| Eco88I | CYCGRG | 1 cut(s) | 507 |
| EcoRI | GAATTC | 2 cut(s) | 469, 526 |
| EcoRII | CCWGG | 2 cut(s) | 124, 328 |
| EcoT38I | GRGCYC | 1 cut(s) | 117 |
| Esp3I | CGTCTC | 1 cut(s) | 701 |
| FaeI | CATG | 2 cut(s) | 478, 1208 |
| FatI | CATG | 2 cut(s) | 474, 1204 |
| FauI | CCCGC | 1 cut(s) | 627 |
| FbaI | TGATCA | 1 cut(s) | 432 |
| Fnu4HI | GCNGC | 5 cut(s) | 165, 326, 1209, 1278, 1464 |
| FokI | GGATG | 1 cut(s) | 407 |
| FriOI | GRGCYC | 1 cut(s) | 117 |
| Fsp4HI | GCNGC | 5 cut(s) | 165, 326, 1209, 1278, 1464 |
| FspBI | CTAG | 6 cut(s) | 101, 965, 1067, 1296, 1488, 1493 |
| GlaI | GCGC | 1 cut(s) | 297 |
| GluI | GCNGC | 5 cut(s) | 165, 326, 1209, 1278, 1464 |
| GsuI | CTGGAG | 1 cut(s) | 816 |
| HapII | CCGG | 1 cut(s) | 392 |
| HgaI | GACGC | 1 cut(s) | 282 |
| HhaI | GCGC | 1 cut(s) | 298 |
| Hin1II | CATG | 2 cut(s) | 478, 1208 |
| Hin6I | GCGC | 1 cut(s) | 296 |
| HinP1I | GCGC | 1 cut(s) | 296 |
| HincII | GTYRAC | 2 cut(s) | 207, 1082 |
| HindII | GTYRAC | 2 cut(s) | 207, 1082 |
| HinfI | GANTC | 4 cut(s) | 41, 314, 385, 572 |
| HpaII | CCGG | 1 cut(s) | 392 |
| HphI | GGTGA | 3 cut(s) | 455, 653, 691 |
| Hpy166II | GTNNAC | 3 cut(s) | 207, 1082, 1309 |
| Hpy188III | TCNNGA | 2 cut(s) | 38, 1139 |
| Hpy8I | GTNNAC | 3 cut(s) | 207, 1082, 1309 |
| HpyAV | CCTTC | 3 cut(s) | 309, 1172, 1334 |
| HpyCH4III | ACNGT | 3 cut(s) | 1053, 1155, 1289 |
| HpyCH4IV | ACGT | 1 cut(s) | 1263 |
| HpyCH4V | TGCA | 5 cut(s) | 653, 1020, 1148, 1322, 1466 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1324 |
| HpyF3I | CTNAG | 3 cut(s) | 179, 849, 1007 |
| HpySE526I | ACGT | 1 cut(s) | 1263 |
| Hsp92II | CATG | 2 cut(s) | 478, 1208 |
| HspAI | GCGC | 1 cut(s) | 296 |
| KpnI | GGTACC | 1 cut(s) | 542 |
| Ksp22I | TGATCA | 1 cut(s) | 432 |
| Kzo9I | GATC | 1 cut(s) | 432 |
| LmnI | GCTCC | 1 cut(s) | 332 |
| Lsp1109I | GCAGC | 4 cut(s) | 151, 1195, 1264, 1450 |
| LweI | GCATC | 2 cut(s) | 268, 973 |
| MaeI | CTAG | 6 cut(s) | 101, 965, 1067, 1296, 1488, 1493 |
| MaeII | ACGT | 1 cut(s) | 1263 |
| MaeIII | GTNAC | 3 cut(s) | 266, 974, 1115 |
| MalI | GATC | 1 cut(s) | 434 |
| MboI | GATC | 1 cut(s) | 432 |
| MboII | GAAGA | 7 cut(s) | 207, 309, 717, 874, 889, 933, 1070 |
| MhlI | GDGCHC | 2 cut(s) | 117, 804 |
| MluI | ACGCGT | 1 cut(s) | 274 |
| MlyI | GAGTC | 1 cut(s) | 35 |
| MmeI | TCCRAC | 3 cut(s) | 48, 896, 1111 |
| MroXI | GAANNNNTTC | 1 cut(s) | 8 |
| MseI | TTAA | 4 cut(s) | 1125, 1185, 1230, 1383 |
| MslI | CAYNNNNRTG | 1 cut(s) | 896 |
| MspI | CCGG | 1 cut(s) | 392 |
| MspR9I | CCNGG | 2 cut(s) | 126, 330 |
| MvaI | CCWGG | 2 cut(s) | 126, 330 |
| MvnI | CGCG | 2 cut(s) | 276, 1194 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1324 |
| NdeII | GATC | 1 cut(s) | 432 |
| NlaIII | CATG | 2 cut(s) | 478, 1208 |
| NlaIV | GGNNCC | 2 cut(s) | 343, 540 |
| NmuCI | GTSAC | 2 cut(s) | 266, 974 |
| NspI | RCATGY | 1 cut(s) | 1208 |
| NspV | TTCGAA | 1 cut(s) | 312 |
| PdmI | GAANNNNTTC | 1 cut(s) | 8 |
| PfeI | GAWTC | 3 cut(s) | 314, 385, 572 |
| PkrI | GCNGC | 5 cut(s) | 166, 327, 1210, 1279, 1465 |
| PleI | GAGTC | 1 cut(s) | 35 |
| PpsI | GAGTC | 1 cut(s) | 35 |
| PshBI | ATTAAT | 1 cut(s) | 1383 |
| PsiI | TTATAA | 1 cut(s) | 896 |
| Psp6I | CCWGG | 2 cut(s) | 124, 328 |
| PspGI | CCWGG | 2 cut(s) | 124, 328 |
| PspN4I | GGNNCC | 2 cut(s) | 343, 540 |
| PstI | CTGCAG | 1 cut(s) | 1468 |
| PstNI | CAGNNNCTG | 2 cut(s) | 164, 1502 |
| RsaI | GTAC | 3 cut(s) | 54, 540, 1310 |
| RsaNI | GTAC | 3 cut(s) | 53, 539, 1309 |
| RseI | CAYNNNNRTG | 1 cut(s) | 896 |
| SaqAI | TTAA | 4 cut(s) | 1125, 1185, 1230, 1383 |
| SatI | GCNGC | 5 cut(s) | 165, 326, 1209, 1278, 1464 |
| Sau3AI | GATC | 1 cut(s) | 432 |
| SchI | GAGTC | 1 cut(s) | 35 |
| ScrFI | CCNGG | 2 cut(s) | 126, 330 |
| SduI | GDGCHC | 2 cut(s) | 117, 804 |
| SfaNI | GCATC | 2 cut(s) | 268, 973 |
| SfcI | CTRYAG | 1 cut(s) | 1464 |
| SfuI | TTCGAA | 1 cut(s) | 312 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 896 |
| SmlI | CTYRAG | 1 cut(s) | 254 |
| SmoI | CTYRAG | 1 cut(s) | 254 |
| SsiI | CCGC | 3 cut(s) | 326, 634, 1237 |
| SspI | AATATT | 3 cut(s) | 9, 1107, 1366 |
| SspMI | CTAG | 6 cut(s) | 101, 965, 1067, 1296, 1488, 1493 |
| StyD4I | CCNGG | 2 cut(s) | 124, 328 |
| TaaI | ACNGT | 3 cut(s) | 1053, 1155, 1289 |
| TaiI | ACGT | 1 cut(s) | 1266 |
| TaqI | TCGA | 5 cut(s) | 39, 312, 358, 388, 516 |
| TaqII | GACCGA | 1 cut(s) | 1388 |
| TatI | WGTACW | 2 cut(s) | 52, 1308 |
| TauI | GCSGC | 1 cut(s) | 328 |
| TfiI | GAWTC | 3 cut(s) | 314, 385, 572 |
| Tru1I | TTAA | 4 cut(s) | 1125, 1185, 1230, 1383 |
| Tru9I | TTAA | 4 cut(s) | 1125, 1185, 1230, 1383 |
| TscAI | CASTG | 3 cut(s) | 298, 1311, 1416 |
| TseFI | GTSAC | 2 cut(s) | 266, 974 |
| TseI | GCWGC | 4 cut(s) | 164, 1208, 1277, 1463 |
| Tsp45I | GTSAC | 2 cut(s) | 266, 974 |
| TspDTI | ATGAA | 8 cut(s) | 17, 62, 491, 615, 875, 1071, 1116, 1349 |
| TspGWI | ACGGA | 1 cut(s) | 285 |
| TspRI | CASTG | 3 cut(s) | 298, 1311, 1416 |
| VspI | ATTAAT | 1 cut(s) | 1383 |
| XapI | RAATTY | 6 cut(s) | 223, 469, 526, 690, 925, 1031 |
| XceI | RCATGY | 1 cut(s) | 1208 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 710 |
| XmnI | GAANNNNTTC | 1 cut(s) | 8 |
| XspI | CTAG | 6 cut(s) | 101, 965, 1067, 1296, 1488, 1493 |