Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g33340 |
| malus_domestica | MD08G1213200.v1.1 |
| prunus_persica | Prupe.1G544500_v2.0.a1 |
| pyrus_communis | pycom08g18310 |
| rosa_chinensis | RchiOBHm_Chr7g0232061 |
| rosa_laevigata | RLG00000001396 |
| rosa_multiflora | Rmu_sc0004618.1_g000017 Rmu_sc0009837.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00228850 |
| rosa_rugosa | Rorug07G0268800 |
| rosa_samantha | Rh7AG423200 Rh7BG397400 Rh7CG443600 Rh7DG415500 |
| rosa_wichuraiana | Rw7G035010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1527 |
| AccI | GTMKAC | 2 cut(s) | 844, 1472 |
| AciI | CCGC | 4 cut(s) | 207, 682, 734, 1294 |
| AclWI | GGATC | 1 cut(s) | 844 |
| AcoI | YGGCCR | 1 cut(s) | 903 |
| AcsI | RAATTY | 7 cut(s) | 136, 517, 574, 619, 738, 982, 1192 |
| AcuI | CTGAAG | 3 cut(s) | 204, 375, 1542 |
| AcyI | GRCGYC | 1 cut(s) | 506 |
| AfaI | GTAC | 2 cut(s) | 17, 263 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 122, 733 |
| AjnI | CCWGG | 1 cut(s) | 382 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 398, 430 |
| AluBI | AGCT | 6 cut(s) | 389, 660, 995, 1071, 1100, 1492 |
| AluI | AGCT | 6 cut(s) | 389, 660, 995, 1071, 1100, 1492 |
| Alw21I | GWGCWC | 1 cut(s) | 1494 |
| Alw26I | GTCTC | 1 cut(s) | 749 |
| AlwI | GGATC | 1 cut(s) | 844 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 398, 1542 |
| AoxI | GGCC | 2 cut(s) | 283, 903 |
| ApeKI | GCWGC | 2 cut(s) | 224, 1265 |
| ApoI | RAATTY | 7 cut(s) | 136, 517, 574, 619, 738, 982, 1192 |
| AseI | ATTAAT | 1 cut(s) | 1440 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 8, 722 |
| AspS9I | GGNCC | 2 cut(s) | 283, 443 |
| AsuHPI | GGTGA | 1 cut(s) | 503 |
| AvaII | GGWCC | 1 cut(s) | 443 |
| BanII | GRGCYC | 2 cut(s) | 117, 1494 |
| BauI | CACGAG | 1 cut(s) | 265 |
| BbsI | GAAGAC | 1 cut(s) | 345 |
| Bbv12I | GWGCWC | 1 cut(s) | 1494 |
| BbvI | GCAGC | 2 cut(s) | 236, 1277 |
| BccI | CCATC | 3 cut(s) | 73, 238, 428 |
| BceAI | ACGGC | 1 cut(s) | 1079 |
| BciT130I | CCWGG | 1 cut(s) | 384 |
| BcoDI | GTCTC | 1 cut(s) | 749 |
| BfaI | CTAG | 2 cut(s) | 101, 1550 |
| BfmI | CTRYAG | 1 cut(s) | 1543 |
| BfuAI | ACCTGC | 1 cut(s) | 1527 |
| BglII | AGATCT | 1 cut(s) | 938 |
| BisI | GCNGC | 2 cut(s) | 225, 1266 |
| BlsI | GCNGC | 2 cut(s) | 226, 1267 |
| Bme1390I | CCNGG | 1 cut(s) | 384 |
| Bme18I | GGWCC | 1 cut(s) | 443 |
| BmgT120I | GGNCC | 2 cut(s) | 283, 443 |
| BmrFI | CCNGG | 1 cut(s) | 384 |
| BmsI | GCATC | 2 cut(s) | 349, 864 |
| BpiI | GAAGAC | 1 cut(s) | 345 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 359, 391 |
| BsaBI | GATNNNNATC | 1 cut(s) | 318 |
| BsaHI | GRCGYC | 1 cut(s) | 506 |
| BsaWI | WCCGGW | 1 cut(s) | 1456 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 122, 733 |
| Bse3DI | GCAATG | 2 cut(s) | 549, 708 |
| Bse8I | GATNNNNATC | 1 cut(s) | 318 |
| BseBI | CCWGG | 1 cut(s) | 384 |
| BseJI | GATNNNNATC | 1 cut(s) | 318 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 122, 733 |
| BseMI | GCAATG | 2 cut(s) | 549, 708 |
| BseMII | CTCAG | 3 cut(s) | 569, 892, 1078 |
| BseXI | GCAGC | 2 cut(s) | 236, 1277 |
| BshFI | GGCC | 2 cut(s) | 285, 905 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1494 |
| BsiSI | CCGG | 1 cut(s) | 1457 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 122, 733 |
| BsmAI | GTCTC | 1 cut(s) | 749 |
| BsmI | GAATGC | 1 cut(s) | 760 |
| BsnI | GGCC | 2 cut(s) | 285, 905 |
| Bsp1286I | GDGCHC | 2 cut(s) | 117, 1494 |
| Bsp1407I | TGTACA | 1 cut(s) | 261 |
| Bsp143I | GATC | 4 cut(s) | 313, 728, 836, 938 |
| BspACI | CCGC | 4 cut(s) | 207, 682, 734, 1294 |
| BspANI | GGCC | 2 cut(s) | 285, 905 |
| BspCNI | CTCAG | 3 cut(s) | 568, 891, 1077 |
| BspHI | TCATGA | 1 cut(s) | 954 |
| BspMI | ACCTGC | 1 cut(s) | 1527 |
| BspPI | GGATC | 1 cut(s) | 844 |
| BsrDI | GCAATG | 2 cut(s) | 549, 708 |
| BsrGI | TGTACA | 1 cut(s) | 261 |
| BssMI | GATC | 4 cut(s) | 313, 728, 836, 938 |
| BssNAI | GTATAC | 1 cut(s) | 1473 |
| BssNI | GRCGYC | 1 cut(s) | 506 |
| BssSI | CACGAG | 1 cut(s) | 265 |
| Bst1107I | GTATAC | 1 cut(s) | 1473 |
| Bst2BI | CACGAG | 1 cut(s) | 265 |
| Bst2UI | CCWGG | 1 cut(s) | 384 |
| Bst4CI | ACNGT | 3 cut(s) | 1110, 1346, 1370 |
| Bst6I | CTCTTC | 2 cut(s) | 124, 929 |
| BstACI | GRCGYC | 1 cut(s) | 506 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 215 |
| BstAUI | TGTACA | 1 cut(s) | 261 |
| BstC8I | GCNNGC | 4 cut(s) | 166, 1207, 1263, 1377 |
| BstDEI | CTNAG | 3 cut(s) | 555, 878, 1064 |
| BstKTI | GATC | 4 cut(s) | 316, 731, 839, 941 |
| BstMAI | GTCTC | 1 cut(s) | 749 |
| BstMBI | GATC | 4 cut(s) | 313, 728, 836, 938 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 215, 224, 376, 551, 1381, 1512 |
| BstNI | CCWGG | 1 cut(s) | 384 |
| BstNSI | RCATGY | 2 cut(s) | 1265, 1322 |
| BstSCI | CCNGG | 1 cut(s) | 382 |
| BstSFI | CTRYAG | 1 cut(s) | 1543 |
| BstV1I | GCAGC | 2 cut(s) | 236, 1277 |
| BstV2I | GAAGAC | 1 cut(s) | 345 |
| BstX2I | RGATCY | 1 cut(s) | 938 |
| BstYI | RGATCY | 1 cut(s) | 938 |
| BstZ17I | GTATAC | 1 cut(s) | 1473 |
| BsuRI | GGCC | 2 cut(s) | 285, 905 |
| BtgZI | GCGATG | 2 cut(s) | 1242, 1396 |
| BtsI | GCAGTG | 1 cut(s) | 1473 |
| BtsIMutI | CAGTG | 3 cut(s) | 180, 886, 1473 |
| BveI | ACCTGC | 1 cut(s) | 1527 |
| Cac8I | GCNNGC | 4 cut(s) | 166, 1207, 1263, 1377 |
| CaiI | CAGNNNCTG | 2 cut(s) | 398, 1542 |
| CciI | TCATGA | 1 cut(s) | 954 |
| Cfr13I | GGNCC | 2 cut(s) | 283, 443 |
| CseI | GACGC | 3 cut(s) | 336, 339, 495 |
| Csp6I | GTAC | 2 cut(s) | 16, 262 |
| CviQI | GTAC | 2 cut(s) | 16, 262 |
| DdeI | CTNAG | 3 cut(s) | 555, 878, 1064 |
| DpnI | GATC | 4 cut(s) | 315, 730, 838, 940 |
| DpnII | GATC | 4 cut(s) | 313, 728, 836, 938 |
| DraI | TTTAAA | 1 cut(s) | 898 |
| EaeI | YGGCCR | 1 cut(s) | 903 |
| Eam1104I | CTCTTC | 2 cut(s) | 124, 929 |
| EarI | CTCTTC | 2 cut(s) | 124, 929 |
| Ecl136II | GAGCTC | 1 cut(s) | 1492 |
| Eco24I | GRGCYC | 2 cut(s) | 117, 1494 |
| Eco47I | GGWCC | 1 cut(s) | 443 |
| Eco53kI | GAGCTC | 1 cut(s) | 1492 |
| Eco57I | CTGAAG | 3 cut(s) | 204, 375, 1542 |
| EcoICRI | GAGCTC | 1 cut(s) | 1492 |
| EcoO109I | RGGNCCY | 1 cut(s) | 283 |
| EcoRI | GAATTC | 4 cut(s) | 136, 517, 574, 619 |
| EcoRII | CCWGG | 1 cut(s) | 382 |
| EcoT22I | ATGCAT | 1 cut(s) | 760 |
| EcoT38I | GRGCYC | 2 cut(s) | 117, 1494 |
| FauI | CCCGC | 1 cut(s) | 727 |
| FauNDI | CATATG | 1 cut(s) | 1312 |
| FblI | GTMKAC | 2 cut(s) | 844, 1472 |
| Fnu4HI | GCNGC | 2 cut(s) | 225, 1266 |
| FriOI | GRGCYC | 2 cut(s) | 117, 1494 |
| Fsp4HI | GCNGC | 2 cut(s) | 225, 1266 |
| FspBI | CTAG | 2 cut(s) | 101, 1550 |
| GluI | GCNGC | 2 cut(s) | 225, 1266 |
| HaeIII | GGCC | 2 cut(s) | 285, 905 |
| HapII | CCGG | 1 cut(s) | 1457 |
| HgaI | GACGC | 3 cut(s) | 336, 339, 495 |
| Hin1I | GRCGYC | 1 cut(s) | 506 |
| HincII | GTYRAC | 1 cut(s) | 845 |
| HindII | GTYRAC | 1 cut(s) | 845 |
| HinfI | GANTC | 4 cut(s) | 41, 295, 1040, 1328 |
| HpaII | CCGG | 1 cut(s) | 1457 |
| HphI | GGTGA | 1 cut(s) | 503 |
| Hpy166II | GTNNAC | 4 cut(s) | 264, 845, 1366, 1473 |
| Hpy188I | TCNGA | 7 cut(s) | 358, 400, 558, 580, 728, 975, 1428 |
| Hpy188III | TCNNGA | 6 cut(s) | 38, 60, 133, 292, 955, 1142 |
| Hpy8I | GTNNAC | 4 cut(s) | 264, 845, 1366, 1473 |
| Hpy99I | CGWCG | 1 cut(s) | 784 |
| HpyAV | CCTTC | 4 cut(s) | 480, 784, 1228, 1391 |
| HpyCH4III | ACNGT | 3 cut(s) | 1110, 1346, 1370 |
| HpyCH4IV | ACGT | 1 cut(s) | 423 |
| HpyCH4V | TGCA | 7 cut(s) | 247, 701, 758, 1205, 1265, 1379, 1466 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 215, 224, 376, 551, 1381, 1512 |
| HpyF3I | CTNAG | 3 cut(s) | 555, 878, 1064 |
| HpySE526I | ACGT | 1 cut(s) | 423 |
| Hsp92I | GRCGYC | 1 cut(s) | 506 |
| Kzo9I | GATC | 4 cut(s) | 313, 728, 836, 938 |
| LmnI | GCTCC | 2 cut(s) | 82, 386 |
| Lsp1109I | GCAGC | 2 cut(s) | 236, 1277 |
| LweI | GCATC | 2 cut(s) | 349, 864 |
| MaeI | CTAG | 2 cut(s) | 101, 1550 |
| MaeII | ACGT | 1 cut(s) | 423 |
| MaeIII | GTNAC | 3 cut(s) | 1031, 1172, 1212 |
| MalI | GATC | 4 cut(s) | 315, 730, 838, 940 |
| MboI | GATC | 4 cut(s) | 313, 728, 836, 938 |
| MboII | GAAGA | 8 cut(s) | 80, 111, 195, 225, 345, 946, 990, 1535 |
| MflI | RGATCY | 1 cut(s) | 938 |
| MhlI | GDGCHC | 2 cut(s) | 117, 1494 |
| MlyI | GAGTC | 1 cut(s) | 35 |
| MmeI | TCCRAC | 3 cut(s) | 48, 953, 1168 |
| Mph1103I | ATGCAT | 1 cut(s) | 760 |
| MroXI | GAANNNNTTC | 2 cut(s) | 8, 722 |
| MseI | TTAA | 8 cut(s) | 309, 615, 897, 1242, 1287, 1338, 1440, 1452 |
| MspA1I | CMGCKG | 1 cut(s) | 734 |
| MspI | CCGG | 1 cut(s) | 1457 |
| MspR9I | CCNGG | 1 cut(s) | 384 |
| Mva1269I | GAATGC | 1 cut(s) | 760 |
| MvaI | CCWGG | 1 cut(s) | 384 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 215, 224, 376, 551, 1381, 1512 |
| NdeI | CATATG | 1 cut(s) | 1312 |
| NdeII | GATC | 4 cut(s) | 313, 728, 836, 938 |
| NmeAIII | GCCGAG | 1 cut(s) | 931 |
| NmuCI | GTSAC | 1 cut(s) | 1031 |
| NsiI | ATGCAT | 1 cut(s) | 760 |
| NspI | RCATGY | 2 cut(s) | 1265, 1322 |
| PaeI | GCATGC | 1 cut(s) | 1265 |
| PagI | TCATGA | 1 cut(s) | 954 |
| PctI | GAATGC | 1 cut(s) | 760 |
| PdmI | GAANNNNTTC | 2 cut(s) | 8, 722 |
| PfeI | GAWTC | 3 cut(s) | 295, 1040, 1328 |
| PkrI | GCNGC | 2 cut(s) | 226, 1267 |
| PleI | GAGTC | 1 cut(s) | 35 |
| PpsI | GAGTC | 1 cut(s) | 35 |
| PshBI | ATTAAT | 1 cut(s) | 1440 |
| Psp124BI | GAGCTC | 1 cut(s) | 1494 |
| Psp6I | CCWGG | 1 cut(s) | 382 |
| PspGI | CCWGG | 1 cut(s) | 382 |
| PspPI | GGNCC | 2 cut(s) | 283, 443 |
| PstNI | CAGNNNCTG | 2 cut(s) | 398, 1542 |
| PsuI | RGATCY | 1 cut(s) | 938 |
| RsaI | GTAC | 2 cut(s) | 17, 263 |
| RsaNI | GTAC | 2 cut(s) | 16, 262 |
| SacI | GAGCTC | 1 cut(s) | 1494 |
| SalI | GTCGAC | 1 cut(s) | 843 |
| SaqAI | TTAA | 8 cut(s) | 309, 615, 897, 1242, 1287, 1338, 1440, 1452 |
| SatI | GCNGC | 2 cut(s) | 225, 1266 |
| Sau3AI | GATC | 4 cut(s) | 313, 728, 836, 938 |
| Sau96I | GGNCC | 2 cut(s) | 283, 443 |
| SchI | GAGTC | 1 cut(s) | 35 |
| ScrFI | CCNGG | 1 cut(s) | 384 |
| SduI | GDGCHC | 2 cut(s) | 117, 1494 |
| SfaNI | GCATC | 2 cut(s) | 349, 864 |
| SfcI | CTRYAG | 1 cut(s) | 1543 |
| SinI | GGWCC | 1 cut(s) | 443 |
| SphI | GCATGC | 1 cut(s) | 1265 |
| SsiI | CCGC | 4 cut(s) | 207, 682, 734, 1294 |
| SspI | AATATT | 1 cut(s) | 1423 |
| SspMI | CTAG | 2 cut(s) | 101, 1550 |
| SstI | GAGCTC | 1 cut(s) | 1494 |
| StyD4I | CCNGG | 1 cut(s) | 382 |
| TaaI | ACNGT | 3 cut(s) | 1110, 1346, 1370 |
| TaiI | ACGT | 1 cut(s) | 426 |
| TaqI | TCGA | 4 cut(s) | 366, 521, 844, 1249 |
| TaqII | GACCGA | 1 cut(s) | 460 |
| TatI | WGTACW | 1 cut(s) | 261 |
| TfiI | GAWTC | 3 cut(s) | 295, 1040, 1328 |
| Tru1I | TTAA | 8 cut(s) | 309, 615, 897, 1242, 1287, 1338, 1440, 1452 |
| Tru9I | TTAA | 8 cut(s) | 309, 615, 897, 1242, 1287, 1338, 1440, 1452 |
| TscAI | CASTG | 3 cut(s) | 180, 886, 1473 |
| TseFI | GTSAC | 1 cut(s) | 1031 |
| TseI | GCWGC | 2 cut(s) | 224, 1265 |
| Tsp45I | GTSAC | 1 cut(s) | 1031 |
| TspGWI | ACGGA | 2 cut(s) | 766, 941 |
| TspRI | CASTG | 3 cut(s) | 180, 886, 1473 |
| VpaK11BI | GGWCC | 1 cut(s) | 443 |
| VspI | ATTAAT | 1 cut(s) | 1440 |
| XapI | RAATTY | 7 cut(s) | 136, 517, 574, 619, 738, 982, 1192 |
| XceI | RCATGY | 2 cut(s) | 1265, 1322 |
| XmiI | GTMKAC | 2 cut(s) | 844, 1472 |
| XmnI | GAANNNNTTC | 2 cut(s) | 8, 722 |
| XspI | CTAG | 2 cut(s) | 101, 1550 |
| Zsp2I | ATGCAT | 1 cut(s) | 760 |