Transport inhibitor response
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G24390 AT4G24390 AT5G49980 |
| fragaria_vesca | FvH4_5g35920 FvH4_5g35920 |
| malus_domestica | MD08G1192000.v1.1 MD15G1380700.v1.1 |
| prunus_persica | Prupe.1G526900_v2.0.a1 |
| pyrus_communis | pycom08g16580 pycom15g34120 |
| rosa_chinensis | RchiOBHm_Chr7g0237651 |
| rosa_laevigata | RLG00000000978 |
| rosa_multiflora | Rmu_sc0007826.1_g000009 |
| rosa_roxburghii | Rroxscaffold_3G00223900 |
| rosa_rugosa | Rorug07G0306000 |
| rosa_samantha | Rh7AG462700 Rh7BG432700 Rh7CG479500 Rh7DG448500 |
| rosa_wichuraiana | Rw7G038280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 982 |
| Acc65I | GGTACC | 1 cut(s) | 231 |
| AccB1I | GGYRCC | 3 cut(s) | 231, 551, 1350 |
| AccII | CGCG | 4 cut(s) | 237, 300, 321, 1182 |
| AclI | AACGTT | 1 cut(s) | 156 |
| AclWI | GGATC | 6 cut(s) | 62, 75, 249, 891, 972, 1791 |
| AcoI | YGGCCR | 2 cut(s) | 420, 495 |
| AcsI | RAATTY | 2 cut(s) | 715, 1012 |
| AcuI | CTGAAG | 1 cut(s) | 382 |
| AcyI | GRCGYC | 1 cut(s) | 1351 |
| AfaI | GTAC | 6 cut(s) | 233, 431, 452, 859, 1092, 1793 |
| AflII | CTTAAG | 1 cut(s) | 1118 |
| AgsI | TTSAA | 5 cut(s) | 367, 614, 760, 775, 1586 |
| AjnI | CCWGG | 1 cut(s) | 1722 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 998, 1030 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1482, 1514 |
| Alw21I | GWGCWC | 1 cut(s) | 823 |
| Alw26I | GTCTC | 4 cut(s) | 292, 415, 687, 907 |
| AlwI | GGATC | 6 cut(s) | 62, 75, 249, 891, 972, 1791 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1130 |
| Ama87I | CYCGRG | 5 cut(s) | 149, 440, 509, 659, 1683 |
| AoxI | GGCC | 8 cut(s) | 259, 390, 401, 420, 495, 559, 1114, 1358 |
| ApaI | GGGCCC | 1 cut(s) | 394 |
| ApeKI | GCWGC | 7 cut(s) | 523, 537, 914, 1130, 1246, 1286, 1563 |
| ApoI | RAATTY | 2 cut(s) | 715, 1012 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 915, 947, 1586, 1618 |
| Asp718I | GGTACC | 1 cut(s) | 231 |
| AspA2I | CCTAGG | 1 cut(s) | 838 |
| AspLEI | GCGC | 3 cut(s) | 239, 302, 1353 |
| AspS9I | GGNCC | 4 cut(s) | 139, 390, 391, 1196 |
| AsuC2I | CCSGG | 7 cut(s) | 106, 137, 326, 352, 510, 511, 1592 |
| AsuII | TTCGAA | 1 cut(s) | 1501 |
| AvaI | CYCGRG | 5 cut(s) | 149, 440, 509, 659, 1683 |
| AvaII | GGWCC | 2 cut(s) | 139, 1196 |
| AvrII | CCTAGG | 1 cut(s) | 838 |
| AxyI | CCTNAGG | 1 cut(s) | 876 |
| BaeGI | GKGCMC | 1 cut(s) | 394 |
| BalI | TGGCCA | 1 cut(s) | 422 |
| BamHI | GGATCC | 1 cut(s) | 67 |
| BanI | GGYRCC | 3 cut(s) | 231, 551, 1350 |
| BanII | GRGCYC | 2 cut(s) | 394, 823 |
| Bbv12I | GWGCWC | 1 cut(s) | 823 |
| BbvI | GCAGC | 7 cut(s) | 510, 524, 901, 1117, 1233, 1298, 1550 |
| BccI | CCATC | 2 cut(s) | 536, 805 |
| BceAI | ACGGC | 3 cut(s) | 46, 269, 388 |
| BciT130I | CCWGG | 1 cut(s) | 1724 |
| BciVI | GTATCC | 1 cut(s) | 1180 |
| BclI | TGATCA | 1 cut(s) | 1459 |
| BcnI | CCSGG | 7 cut(s) | 106, 137, 326, 352, 510, 511, 1592 |
| BcoDI | GTCTC | 4 cut(s) | 292, 415, 687, 907 |
| BfaI | CTAG | 4 cut(s) | 161, 839, 929, 1436 |
| BfmI | CTRYAG | 2 cut(s) | 1035, 1844 |
| BfoI | RGCGCY | 1 cut(s) | 1354 |
| BfrI | CTTAAG | 1 cut(s) | 1118 |
| BfuAI | ACCTGC | 1 cut(s) | 982 |
| BfuI | GTATCC | 1 cut(s) | 1180 |
| BglII | AGATCT | 1 cut(s) | 1318 |
| BlnI | CCTAGG | 1 cut(s) | 838 |
| Bme1390I | CCNGG | 8 cut(s) | 106, 137, 326, 352, 510, 511, 1592, 1724 |
| Bme18I | GGWCC | 2 cut(s) | 139, 1196 |
| BmeT110I | CYCGRG | 5 cut(s) | 149, 440, 509, 659, 1683 |
| BmgT120I | GGNCC | 4 cut(s) | 139, 390, 391, 1196 |
| BmiI | GGNNCC | 7 cut(s) | 69, 233, 391, 392, 553, 1197, 1352 |
| BmrFI | CCNGG | 8 cut(s) | 106, 137, 326, 352, 510, 511, 1592, 1724 |
| BmrI | ACTGGG | 1 cut(s) | 1163 |
| BmsI | GCATC | 1 cut(s) | 1642 |
| BmuI | ACTGGG | 1 cut(s) | 1163 |
| BpmI | CTGGAG | 2 cut(s) | 698, 1061 |
| Bpu14I | TTCGAA | 1 cut(s) | 1501 |
| BpuEI | CTTGAG | 3 cut(s) | 1577, 1692, 1823 |
| BpuMI | CCSGG | 7 cut(s) | 106, 137, 326, 352, 510, 511, 1592 |
| BsaHI | GRCGYC | 1 cut(s) | 1351 |
| BsaI | GGTCTC | 1 cut(s) | 415 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 86, 116, 272, 302, 1392, 1422 |
| Bse118I | RCCGGY | 1 cut(s) | 1356 |
| Bse1I | ACTGG | 5 cut(s) | 576, 897, 1052, 1169, 1378 |
| Bse21I | CCTNAGG | 1 cut(s) | 876 |
| BseBI | CCWGG | 1 cut(s) | 1724 |
| BseGI | GGATG | 5 cut(s) | 126, 1241, 1393, 1668, 1822 |
| BseMII | CTCAG | 6 cut(s) | 609, 890, 1182, 1197, 1221, 1524 |
| BseNI | ACTGG | 5 cut(s) | 576, 897, 1052, 1169, 1378 |
| BseRI | GAGGAG | 4 cut(s) | 64, 67, 91, 1769 |
| BseSI | GKGCMC | 1 cut(s) | 394 |
| BseXI | GCAGC | 7 cut(s) | 510, 524, 901, 1117, 1233, 1298, 1550 |
| BsgI | GTGCAG | 1 cut(s) | 604 |
| Bsh1236I | CGCG | 4 cut(s) | 237, 300, 321, 1182 |
| Bsh1285I | CGRYCG | 1 cut(s) | 52 |
| BshFI | GGCC | 8 cut(s) | 261, 392, 403, 422, 497, 561, 1116, 1360 |
| BshNI | GGYRCC | 3 cut(s) | 231, 551, 1350 |
| BsiEI | CGRYCG | 1 cut(s) | 52 |
| BsiHKAI | GWGCWC | 1 cut(s) | 823 |
| BsiHKCI | CYCGRG | 5 cut(s) | 149, 440, 509, 659, 1683 |
| BsiSI | CCGG | 9 cut(s) | 105, 137, 258, 325, 352, 510, 962, 1357, 1591 |
| BslFI | GGGAC | 3 cut(s) | 10, 1554, 1607 |
| BsmAI | GTCTC | 4 cut(s) | 292, 415, 687, 907 |
| BsmBI | CGTCTC | 1 cut(s) | 292 |
| BsmFI | GGGAC | 3 cut(s) | 10, 1554, 1607 |
| BsnI | GGCC | 8 cut(s) | 261, 392, 403, 422, 497, 561, 1116, 1360 |
| Bso31I | GGTCTC | 1 cut(s) | 415 |
| BsoBI | CYCGRG | 5 cut(s) | 149, 440, 509, 659, 1683 |
| Bsp119I | TTCGAA | 1 cut(s) | 1501 |
| Bsp120I | GGGCCC | 1 cut(s) | 390 |
| Bsp1286I | GDGCHC | 2 cut(s) | 394, 823 |
| Bsp143I | GATC | 9 cut(s) | 53, 67, 254, 481, 883, 964, 1318, 1459, 1796 |
| Bsp19I | CCATGG | 2 cut(s) | 417, 1383 |
| Bsp68I | TCGCGA | 1 cut(s) | 1182 |
| BspANI | GGCC | 8 cut(s) | 261, 392, 403, 422, 497, 561, 1116, 1360 |
| BspCNI | CTCAG | 6 cut(s) | 610, 889, 1183, 1198, 1222, 1523 |
| BspFNI | CGCG | 4 cut(s) | 237, 300, 321, 1182 |
| BspLI | GGNNCC | 7 cut(s) | 69, 233, 391, 392, 553, 1197, 1352 |
| BspMAI | CTGCAG | 1 cut(s) | 1039 |
| BspMI | ACCTGC | 1 cut(s) | 982 |
| BspPI | GGATC | 6 cut(s) | 62, 75, 249, 891, 972, 1791 |
| BspT104I | TTCGAA | 1 cut(s) | 1501 |
| BspT107I | GGYRCC | 3 cut(s) | 231, 551, 1350 |
| BspTI | CTTAAG | 1 cut(s) | 1118 |
| BspTNI | GGTCTC | 1 cut(s) | 415 |
| BsrFI | RCCGGY | 1 cut(s) | 1356 |
| BsrI | ACTGG | 5 cut(s) | 576, 897, 1052, 1169, 1378 |
| BssAI | RCCGGY | 1 cut(s) | 1356 |
| BssMI | GATC | 9 cut(s) | 53, 67, 254, 481, 883, 964, 1318, 1459, 1796 |
| BssNI | GRCGYC | 1 cut(s) | 1351 |
| BssT1I | CCWWGG | 5 cut(s) | 417, 423, 434, 838, 1383 |
| Bst2UI | CCWGG | 1 cut(s) | 1724 |
| Bst4CI | ACNGT | 1 cut(s) | 1532 |
| Bst6I | CTCTTC | 3 cut(s) | 269, 1736, 1746 |
| BstACI | GRCGYC | 1 cut(s) | 1351 |
| BstAFI | CTTAAG | 1 cut(s) | 1118 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1130 |
| BstBI | TTCGAA | 1 cut(s) | 1501 |
| BstC8I | GCNNGC | 7 cut(s) | 91, 190, 310, 495, 919, 1180, 1221 |
| BstDEI | CTNAG | 7 cut(s) | 618, 767, 876, 1191, 1206, 1230, 1510 |
| BstDSI | CCRYGG | 3 cut(s) | 404, 417, 1383 |
| BstF5I | GGATG | 5 cut(s) | 126, 1241, 1393, 1668, 1822 |
| BstFNI | CGCG | 4 cut(s) | 237, 300, 321, 1182 |
| BstH2I | RGCGCY | 1 cut(s) | 1354 |
| BstHHI | GCGC | 3 cut(s) | 239, 302, 1353 |
| BstKTI | GATC | 9 cut(s) | 56, 70, 257, 484, 886, 967, 1321, 1462, 1799 |
| BstMAI | GTCTC | 4 cut(s) | 292, 415, 687, 907 |
| BstMBI | GATC | 9 cut(s) | 53, 67, 254, 481, 883, 964, 1318, 1459, 1796 |
| BstMCI | CGRYCG | 1 cut(s) | 52 |
| BstNI | CCWGG | 1 cut(s) | 1724 |
| BstNSI | RCATGY | 1 cut(s) | 466 |
| BstSCI | CCNGG | 8 cut(s) | 104, 135, 324, 350, 508, 509, 1590, 1722 |
| BstSFI | CTRYAG | 2 cut(s) | 1035, 1844 |
| BstSLI | GKGCMC | 1 cut(s) | 394 |
| BstUI | CGCG | 4 cut(s) | 237, 300, 321, 1182 |
| BstV1I | GCAGC | 7 cut(s) | 510, 524, 901, 1117, 1233, 1298, 1550 |
| BstX2I | RGATCY | 2 cut(s) | 67, 1318 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1373 |
| BstYI | RGATCY | 2 cut(s) | 67, 1318 |
| Bsu36I | CCTNAGG | 1 cut(s) | 876 |
| BsuI | GTATCC | 1 cut(s) | 1180 |
| BsuRI | GGCC | 8 cut(s) | 261, 392, 403, 422, 497, 561, 1116, 1360 |
| BtgI | CCRYGG | 3 cut(s) | 404, 417, 1383 |
| BtgZI | GCGATG | 1 cut(s) | 555 |
| BtsCI | GGATG | 5 cut(s) | 126, 1241, 1393, 1668, 1822 |
| BtsI | GCAGTG | 4 cut(s) | 1032, 1063, 1131, 1712 |
| BtsIMutI | CAGTG | 5 cut(s) | 1032, 1063, 1131, 1537, 1712 |
| BtuMI | TCGCGA | 1 cut(s) | 1182 |
| BveI | ACCTGC | 1 cut(s) | 982 |
| Cac8I | GCNNGC | 7 cut(s) | 91, 190, 310, 495, 919, 1180, 1221 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1130 |
| CfoI | GCGC | 3 cut(s) | 239, 302, 1353 |
| Cfr10I | RCCGGY | 1 cut(s) | 1356 |
| Cfr13I | GGNCC | 4 cut(s) | 139, 390, 391, 1196 |
| Cfr9I | CCCGGG | 1 cut(s) | 509 |
| CseI | GACGC | 1 cut(s) | 310 |
| Csp6I | GTAC | 6 cut(s) | 232, 430, 451, 858, 1091, 1792 |
| CviQI | GTAC | 6 cut(s) | 232, 430, 451, 858, 1091, 1792 |
| DdeI | CTNAG | 7 cut(s) | 618, 767, 876, 1191, 1206, 1230, 1510 |
| DinI | GGCGCC | 1 cut(s) | 1352 |
| DpnI | GATC | 9 cut(s) | 55, 69, 256, 483, 885, 966, 1320, 1461, 1798 |
| DpnII | GATC | 9 cut(s) | 53, 67, 254, 481, 883, 964, 1318, 1459, 1796 |
| EaeI | YGGCCR | 2 cut(s) | 420, 495 |
| Eam1104I | CTCTTC | 3 cut(s) | 269, 1736, 1746 |
| EarI | CTCTTC | 3 cut(s) | 269, 1736, 1746 |
| EciI | GGCGGA | 2 cut(s) | 48, 403 |
| Ecl136II | GAGCTC | 1 cut(s) | 821 |
| Eco130I | CCWWGG | 5 cut(s) | 417, 423, 434, 838, 1383 |
| Eco147I | AGGCCT | 1 cut(s) | 1116 |
| Eco24I | GRGCYC | 2 cut(s) | 394, 823 |
| Eco31I | GGTCTC | 1 cut(s) | 415 |
| Eco32I | GATATC | 1 cut(s) | 1840 |
| Eco47I | GGWCC | 2 cut(s) | 139, 1196 |
| Eco53kI | GAGCTC | 1 cut(s) | 821 |
| Eco57I | CTGAAG | 1 cut(s) | 382 |
| Eco81I | CCTNAGG | 1 cut(s) | 876 |
| Eco88I | CYCGRG | 5 cut(s) | 149, 440, 509, 659, 1683 |
| EcoICRI | GAGCTC | 1 cut(s) | 821 |
| EcoO109I | RGGNCCY | 2 cut(s) | 390, 1196 |
| EcoRII | CCWGG | 1 cut(s) | 1722 |
| EcoRV | GATATC | 1 cut(s) | 1840 |
| EcoT14I | CCWWGG | 5 cut(s) | 417, 423, 434, 838, 1383 |
| EcoT38I | GRGCYC | 2 cut(s) | 394, 823 |
| EgeI | GGCGCC | 1 cut(s) | 1352 |
| EheI | GGCGCC | 1 cut(s) | 1352 |
| ErhI | CCWWGG | 5 cut(s) | 417, 423, 434, 838, 1383 |
| Esp3I | CGTCTC | 1 cut(s) | 292 |
| FaqI | GGGAC | 3 cut(s) | 10, 1554, 1607 |
| FauI | CCCGC | 6 cut(s) | 98, 197, 302, 317, 326, 1727 |
| FbaI | TGATCA | 1 cut(s) | 1459 |
| FokI | GGATG | 5 cut(s) | 113, 1248, 1400, 1675, 1829 |
| FriOI | GRGCYC | 2 cut(s) | 394, 823 |
| FspBI | CTAG | 4 cut(s) | 161, 839, 929, 1436 |
| GlaI | GCGC | 3 cut(s) | 238, 301, 1352 |
| GsuI | CTGGAG | 2 cut(s) | 698, 1061 |
| HaeII | RGCGCY | 1 cut(s) | 1354 |
| HaeIII | GGCC | 8 cut(s) | 261, 392, 403, 422, 497, 561, 1116, 1360 |
| HapII | CCGG | 9 cut(s) | 105, 137, 258, 325, 352, 510, 962, 1357, 1591 |
| HgaI | GACGC | 1 cut(s) | 310 |
| HhaI | GCGC | 3 cut(s) | 239, 302, 1353 |
| Hin1I | GRCGYC | 1 cut(s) | 1351 |
| Hin6I | GCGC | 3 cut(s) | 237, 300, 1351 |
| HinP1I | GCGC | 3 cut(s) | 237, 300, 1351 |
| HincII | GTYRAC | 1 cut(s) | 1271 |
| HindII | GTYRAC | 1 cut(s) | 1271 |
| HindIII | AAGCTT | 1 cut(s) | 1580 |
| HinfI | GANTC | 7 cut(s) | 500, 614, 680, 1097, 1379, 1610, 1653 |
| HpaII | CCGG | 9 cut(s) | 105, 137, 258, 325, 352, 510, 962, 1357, 1591 |
| Hpy166II | GTNNAC | 4 cut(s) | 451, 1154, 1271, 1451 |
| Hpy188I | TCNGA | 7 cut(s) | 37, 619, 687, 1002, 1011, 1207, 1231 |
| Hpy8I | GTNNAC | 4 cut(s) | 451, 1154, 1271, 1451 |
| Hpy99I | CGWCG | 6 cut(s) | 25, 47, 50, 479, 482, 635 |
| HpyAV | CCTTC | 5 cut(s) | 24, 514, 1106, 1385, 1682 |
| HpyCH4III | ACNGT | 1 cut(s) | 1532 |
| HpyCH4IV | ACGT | 4 cut(s) | 156, 168, 1060, 1273 |
| HpyF3I | CTNAG | 7 cut(s) | 618, 767, 876, 1191, 1206, 1230, 1510 |
| HpySE526I | ACGT | 4 cut(s) | 156, 168, 1060, 1273 |
| Hsp92I | GRCGYC | 1 cut(s) | 1351 |
| HspAI | GCGC | 3 cut(s) | 237, 300, 1351 |
| KasI | GGCGCC | 1 cut(s) | 1350 |
| KpnI | GGTACC | 1 cut(s) | 235 |
| Ksp22I | TGATCA | 1 cut(s) | 1459 |
| Kzo9I | GATC | 9 cut(s) | 53, 67, 254, 481, 883, 964, 1318, 1459, 1796 |
| LmnI | GCTCC | 5 cut(s) | 104, 520, 826, 1080, 1400 |
| Lsp1109I | GCAGC | 7 cut(s) | 510, 524, 901, 1117, 1233, 1298, 1550 |
| LweI | GCATC | 1 cut(s) | 1642 |
| MaeI | CTAG | 4 cut(s) | 161, 839, 929, 1436 |
| MaeII | ACGT | 4 cut(s) | 156, 168, 1060, 1273 |
| MaeIII | GTNAC | 5 cut(s) | 469, 969, 1061, 1526, 1532 |
| MalI | GATC | 9 cut(s) | 55, 69, 256, 483, 885, 966, 1320, 1461, 1798 |
| MboI | GATC | 9 cut(s) | 53, 67, 254, 481, 883, 964, 1318, 1459, 1796 |
| MboII | GAAGA | 5 cut(s) | 9, 256, 772, 1753, 1763 |
| MfeI | CAATTG | 1 cut(s) | 382 |
| MflI | RGATCY | 2 cut(s) | 67, 1318 |
| MhlI | GDGCHC | 2 cut(s) | 394, 823 |
| MlsI | TGGCCA | 1 cut(s) | 422 |
| MluCI | AATT | 8 cut(s) | 382, 715, 1012, 1145, 1414, 1484, 1493, 1571 |
| MluNI | TGGCCA | 1 cut(s) | 422 |
| Mly113I | GGCGCC | 1 cut(s) | 1351 |
| MlyI | GAGTC | 3 cut(s) | 509, 689, 1388 |
| MmeI | TCCRAC | 2 cut(s) | 45, 105 |
| Mox20I | TGGCCA | 1 cut(s) | 422 |
| MscI | TGGCCA | 1 cut(s) | 422 |
| MseI | TTAA | 5 cut(s) | 339, 516, 594, 1119, 1679 |
| Msp20I | TGGCCA | 1 cut(s) | 422 |
| MspA1I | CMGCKG | 2 cut(s) | 558, 1289 |
| MspCI | CTTAAG | 1 cut(s) | 1118 |
| MspI | CCGG | 9 cut(s) | 105, 137, 258, 325, 352, 510, 962, 1357, 1591 |
| MspR9I | CCNGG | 8 cut(s) | 106, 137, 326, 352, 510, 511, 1592, 1724 |
| MunI | CAATTG | 1 cut(s) | 382 |
| MvaI | CCWGG | 1 cut(s) | 1724 |
| MvnI | CGCG | 4 cut(s) | 237, 300, 321, 1182 |
| NarI | GGCGCC | 1 cut(s) | 1351 |
| NciI | CCSGG | 7 cut(s) | 106, 137, 326, 352, 510, 511, 1592 |
| NcoI | CCATGG | 2 cut(s) | 417, 1383 |
| NdeII | GATC | 9 cut(s) | 53, 67, 254, 481, 883, 964, 1318, 1459, 1796 |
| NlaIV | GGNNCC | 7 cut(s) | 69, 233, 391, 392, 553, 1197, 1352 |
| NmeAIII | GCCGAG | 2 cut(s) | 265, 523 |
| NmuCI | GTSAC | 4 cut(s) | 469, 1061, 1526, 1532 |
| NruI | TCGCGA | 1 cut(s) | 1182 |
| NspI | RCATGY | 1 cut(s) | 466 |
| NspV | TTCGAA | 1 cut(s) | 1501 |
| PaeR7I | CTCGAG | 2 cut(s) | 149, 440 |
| PceI | AGGCCT | 1 cut(s) | 1116 |
| PfeI | GAWTC | 4 cut(s) | 614, 1097, 1610, 1653 |
| PflFI | GACNNNGTC | 1 cut(s) | 143 |
| PfoI | TCCNGGA | 1 cut(s) | 1590 |
| PleI | GAGTC | 3 cut(s) | 508, 688, 1387 |
| PluTI | GGCGCC | 1 cut(s) | 1354 |
| PpsI | GAGTC | 3 cut(s) | 508, 688, 1387 |
| PpuMI | RGGWCCY | 1 cut(s) | 1196 |
| Psp124BI | GAGCTC | 1 cut(s) | 823 |
| Psp1406I | AACGTT | 1 cut(s) | 156 |
| Psp5II | RGGWCCY | 1 cut(s) | 1196 |
| Psp6I | CCWGG | 1 cut(s) | 1722 |
| PspGI | CCWGG | 1 cut(s) | 1722 |
| PspN4I | GGNNCC | 7 cut(s) | 69, 233, 391, 392, 553, 1197, 1352 |
| PspOMI | GGGCCC | 1 cut(s) | 390 |
| PspPI | GGNCC | 4 cut(s) | 139, 390, 391, 1196 |
| PspPPI | RGGWCCY | 1 cut(s) | 1196 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1032, 1064 |
| PstI | CTGCAG | 1 cut(s) | 1039 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1130 |
| PsuI | RGATCY | 2 cut(s) | 67, 1318 |
| PsyI | GACNNNGTC | 1 cut(s) | 143 |
| PvuII | CAGCTG | 1 cut(s) | 1289 |
| RruI | TCGCGA | 1 cut(s) | 1182 |
| RsaI | GTAC | 6 cut(s) | 233, 431, 452, 859, 1092, 1793 |
| RsaNI | GTAC | 6 cut(s) | 232, 430, 451, 858, 1091, 1792 |
| SacI | GAGCTC | 1 cut(s) | 823 |
| SaqAI | TTAA | 5 cut(s) | 339, 516, 594, 1119, 1679 |
| Sau3AI | GATC | 9 cut(s) | 53, 67, 254, 481, 883, 964, 1318, 1459, 1796 |
| Sau96I | GGNCC | 4 cut(s) | 139, 390, 391, 1196 |
| SchI | GAGTC | 3 cut(s) | 509, 689, 1388 |
| ScrFI | CCNGG | 8 cut(s) | 106, 137, 326, 352, 510, 511, 1592, 1724 |
| SduI | GDGCHC | 2 cut(s) | 394, 823 |
| SfaNI | GCATC | 1 cut(s) | 1642 |
| SfcI | CTRYAG | 2 cut(s) | 1035, 1844 |
| SfoI | GGCGCC | 1 cut(s) | 1352 |
| Sfr274I | CTCGAG | 2 cut(s) | 149, 440 |
| SfuI | TTCGAA | 1 cut(s) | 1501 |
| SinI | GGWCC | 2 cut(s) | 139, 1196 |
| SlaI | CTCGAG | 2 cut(s) | 149, 440 |
| SmaI | CCCGGG | 1 cut(s) | 511 |
| SmlI | CTYRAG | 6 cut(s) | 149, 440, 1118, 1556, 1707, 1802 |
| SmoI | CTYRAG | 6 cut(s) | 149, 440, 1118, 1556, 1707, 1802 |
| Sse9I | AATT | 8 cut(s) | 382, 715, 1012, 1145, 1414, 1484, 1493, 1571 |
| SseBI | AGGCCT | 1 cut(s) | 1116 |
| SspDI | GGCGCC | 1 cut(s) | 1350 |
| SspI | AATATT | 1 cut(s) | 1550 |
| SspMI | CTAG | 4 cut(s) | 161, 839, 929, 1436 |
| SstI | GAGCTC | 1 cut(s) | 823 |
| StuI | AGGCCT | 1 cut(s) | 1116 |
| StyD4I | CCNGG | 8 cut(s) | 104, 135, 324, 350, 508, 509, 1590, 1722 |
| StyI | CCWWGG | 5 cut(s) | 417, 423, 434, 838, 1383 |
| TaaI | ACNGT | 1 cut(s) | 1532 |
| TaiI | ACGT | 4 cut(s) | 159, 171, 1063, 1276 |
| TaqI | TCGA | 6 cut(s) | 150, 441, 788, 817, 1095, 1501 |
| TaqII | GACCGA | 1 cut(s) | 66 |
| TasI | AATT | 8 cut(s) | 382, 715, 1012, 1145, 1414, 1484, 1493, 1571 |
| TatI | WGTACW | 1 cut(s) | 857 |
| TauI | GCSGC | 3 cut(s) | 209, 300, 561 |
| TfiI | GAWTC | 4 cut(s) | 614, 1097, 1610, 1653 |
| Tru1I | TTAA | 5 cut(s) | 339, 516, 594, 1119, 1679 |
| Tru9I | TTAA | 5 cut(s) | 339, 516, 594, 1119, 1679 |
| TscAI | CASTG | 5 cut(s) | 1039, 1070, 1131, 1537, 1719 |
| TseFI | GTSAC | 4 cut(s) | 469, 1061, 1526, 1532 |
| TseI | GCWGC | 7 cut(s) | 523, 537, 914, 1130, 1246, 1286, 1563 |
| Tsp45I | GTSAC | 4 cut(s) | 469, 1061, 1526, 1532 |
| TspDTI | ATGAA | 6 cut(s) | 256, 1125, 1404, 1427, 1754, 1764 |
| TspMI | CCCGGG | 1 cut(s) | 509 |
| TspRI | CASTG | 5 cut(s) | 1039, 1070, 1131, 1537, 1719 |
| Tth111I | GACNNNGTC | 1 cut(s) | 143 |
| Vha464I | CTTAAG | 1 cut(s) | 1118 |
| VpaK11BI | GGWCC | 2 cut(s) | 139, 1196 |
| XapI | RAATTY | 2 cut(s) | 715, 1012 |
| XbaI | TCTAGA | 1 cut(s) | 160 |
| XceI | RCATGY | 1 cut(s) | 466 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 788 |
| XhoI | CTCGAG | 2 cut(s) | 149, 440 |
| XmaI | CCCGGG | 1 cut(s) | 509 |
| XmaJI | CCTAGG | 1 cut(s) | 838 |
| XspI | CTAG | 4 cut(s) | 161, 839, 929, 1436 |