Transport inhibitor response
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G24390 AT4G24390 AT5G49980 |
| fragaria_vesca | FvH4_5g35920 FvH4_5g35920 |
| malus_domestica | MD08G1192000.v1.1 MD15G1380700.v1.1 |
| prunus_persica | Prupe.1G526900_v2.0.a1 |
| pyrus_communis | pycom08g16580 pycom15g34120 |
| rosa_chinensis | RchiOBHm_Chr7g0237651 |
| rosa_laevigata | RLG00000000978 |
| rosa_multiflora | Rmu_sc0007826.1_g000009 |
| rosa_roxburghii | Rroxscaffold_3G00223900 |
| rosa_rugosa | Rorug07G0306000 |
| rosa_samantha | Rh7AG462700 Rh7BG432700 Rh7CG479500 Rh7DG448500 |
| rosa_wichuraiana | Rw7G038280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 164 |
| Acc36I | ACCTGC | 1 cut(s) | 164 |
| AciI | CCGC | 1 cut(s) | 133 |
| AcsI | RAATTY | 1 cut(s) | 122 |
| AcuI | CTGAAG | 1 cut(s) | 234 |
| AfaI | GTAC | 1 cut(s) | 104 |
| AgsI | TTSAA | 1 cut(s) | 226 |
| AluBI | AGCT | 1 cut(s) | 295 |
| AluI | AGCT | 1 cut(s) | 295 |
| Alw26I | GTCTC | 1 cut(s) | 121 |
| ApoI | RAATTY | 1 cut(s) | 122 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 151 |
| BbsI | GAAGAC | 1 cut(s) | 222 |
| BccI | CCATC | 1 cut(s) | 136 |
| BcoDI | GTCTC | 1 cut(s) | 121 |
| BfuAI | ACCTGC | 1 cut(s) | 164 |
| BmiI | GGNNCC | 1 cut(s) | 65 |
| BmsI | GCATC | 1 cut(s) | 33 |
| BpiI | GAAGAC | 1 cut(s) | 222 |
| BpuEI | CTTGAG | 2 cut(s) | 148, 217 |
| BseGI | GGATG | 2 cut(s) | 48, 90 |
| BsmAI | GTCTC | 1 cut(s) | 121 |
| BsmI | GAATGC | 1 cut(s) | 57 |
| Bsp143I | GATC | 1 cut(s) | 110 |
| BspACI | CCGC | 1 cut(s) | 133 |
| BspLI | GGNNCC | 1 cut(s) | 65 |
| BspMI | ACCTGC | 1 cut(s) | 164 |
| BssMI | GATC | 1 cut(s) | 110 |
| Bst4CI | ACNGT | 1 cut(s) | 188 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 52 |
| BstF5I | GGATG | 2 cut(s) | 48, 90 |
| BstKTI | GATC | 1 cut(s) | 113 |
| BstMAI | GTCTC | 1 cut(s) | 121 |
| BstMBI | GATC | 1 cut(s) | 110 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 52 |
| BstV2I | GAAGAC | 1 cut(s) | 222 |
| BtsCI | GGATG | 2 cut(s) | 48, 90 |
| BtsIMutI | CAGTG | 3 cut(s) | 25, 33, 210 |
| BveI | ACCTGC | 1 cut(s) | 164 |
| Csp6I | GTAC | 1 cut(s) | 103 |
| CviAII | CATG | 1 cut(s) | 10 |
| CviJI | RGCY | 2 cut(s) | 146, 295 |
| CviKI_1 | RGCY | 2 cut(s) | 146, 295 |
| CviQI | GTAC | 1 cut(s) | 103 |
| DpnI | GATC | 1 cut(s) | 112 |
| DpnII | GATC | 1 cut(s) | 110 |
| Eco57I | CTGAAG | 1 cut(s) | 234 |
| FaeI | CATG | 1 cut(s) | 13 |
| FaiI | YATR | 4 cut(s) | 11, 205, 207, 310 |
| FatI | CATG | 1 cut(s) | 9 |
| FauI | CCCGC | 1 cut(s) | 126 |
| FokI | GGATG | 2 cut(s) | 55, 77 |
| Hin1II | CATG | 1 cut(s) | 13 |
| HinfI | GANTC | 1 cut(s) | 158 |
| HphI | GGTGA | 2 cut(s) | 16, 151 |
| Hpy166II | GTNNAC | 1 cut(s) | 7 |
| Hpy188I | TCNGA | 1 cut(s) | 110 |
| Hpy188III | TCNNGA | 2 cut(s) | 127, 164 |
| Hpy8I | GTNNAC | 1 cut(s) | 7 |
| HpyAV | CCTTC | 1 cut(s) | 25 |
| HpyCH4III | ACNGT | 1 cut(s) | 188 |
| HpyCH4V | TGCA | 3 cut(s) | 46, 55, 196 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 52 |
| Hsp92II | CATG | 1 cut(s) | 13 |
| Kzo9I | GATC | 1 cut(s) | 110 |
| LpnPI | CCDG | 6 cut(s) | 37, 85, 108, 159, 177, 233 |
| LweI | GCATC | 1 cut(s) | 33 |
| MaeIII | GTNAC | 1 cut(s) | 31 |
| MalI | GATC | 1 cut(s) | 112 |
| MboI | GATC | 1 cut(s) | 110 |
| MboII | GAAGA | 1 cut(s) | 227 |
| MluCI | AATT | 1 cut(s) | 122 |
| MnlI | CCTC | 1 cut(s) | 123 |
| Mva1269I | GAATGC | 1 cut(s) | 57 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 52 |
| NdeII | GATC | 1 cut(s) | 110 |
| NlaIII | CATG | 1 cut(s) | 13 |
| NlaIV | GGNNCC | 1 cut(s) | 65 |
| NmuCI | GTSAC | 1 cut(s) | 31 |
| PaqCI | CACCTGC | 1 cut(s) | 164 |
| PctI | GAATGC | 1 cut(s) | 57 |
| PfeI | GAWTC | 1 cut(s) | 158 |
| PspN4I | GGNNCC | 1 cut(s) | 65 |
| RsaI | GTAC | 1 cut(s) | 104 |
| RsaNI | GTAC | 1 cut(s) | 103 |
| Sau3AI | GATC | 1 cut(s) | 110 |
| SetI | ASST | 4 cut(s) | 17, 104, 178, 297 |
| SfaNI | GCATC | 1 cut(s) | 33 |
| SmlI | CTYRAG | 2 cut(s) | 127, 232 |
| SmoI | CTYRAG | 2 cut(s) | 127, 232 |
| Sse9I | AATT | 1 cut(s) | 122 |
| SsiI | CCGC | 1 cut(s) | 133 |
| TaaI | ACNGT | 1 cut(s) | 188 |
| TaqI | TCGA | 2 cut(s) | 148, 285 |
| TasI | AATT | 1 cut(s) | 122 |
| TfiI | GAWTC | 1 cut(s) | 158 |
| TscAI | CASTG | 3 cut(s) | 25, 40, 217 |
| TseFI | GTSAC | 1 cut(s) | 31 |
| Tsp45I | GTSAC | 1 cut(s) | 31 |
| TspDTI | ATGAA | 2 cut(s) | 294, 315 |
| TspRI | CASTG | 3 cut(s) | 25, 40, 217 |
| XapI | RAATTY | 1 cut(s) | 122 |