FvH4_5g38860

Ubiquitin system component Cue protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016864
Physical Location & Seq
Forward (+)
28711427 .. 28712197
771 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38860.t1

Sequence Viewer

Length: 567 bp
ATGGCCGCAGCAGCAGTTCTGTGTGGAAACAAGAGGTCGTTCTTATTCGAAGAAGATGTGTACCCTTCATCAATTCATCTACCCAAAAGACTTCGATGCTCTTCTTCTCCTACGGTTCCTCCTCAACATAATGTCACTTCACTTCGTCGTCTAGCTGAGGAAACCAAACCTGAACGTTTCGGAAAGAGAGCGAAGCTGACTCATGAGAATCTGAGCAATGTGGAGGAATGGGTTGAGCTGTTTGTTAGAGAGATGAGCAGCGCCACCAGCGTCGACGATGCCAAGTCACGTGCTGCAAAGGCGCTAGAGGTCTTTGAGCATGGGATCATGTCACGTGCTGCCGCCGAGGCTGAGGTGGTAGCCGCCCAGAAGGAGGAGCAGAATATGATGCTGAAACAAGAAATCCAAGAAATAAAAAAGGAGAATATGATTCAGAACGAGCGTCTTAAAGAATATCAGGGCCGAAACCAAGAACTAGAAGTTGCCAACTATGGCTTGCAACTGCACCTCAAGCGAGCTCAATGCAACACCTCCATCCCTCTAAGTTTCCATCCTCATGTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

189

Amino Acids

21.43

Weight (kDa)

7.07

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016864)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g38860 FvH4_6g20801
rosa_chinensis RchiOBHm_Chr5g0009411
rosa_laevigata RLG00000031659
rosa_multiflora Rmu_co7974186.1_g000001
rosa_roxburghii Rroxscaffold_1G00067390
rosa_rugosa Rorug04G0442700
rosa_samantha Rh5AG073300 Rh5AG073900 Rh5BG069700 Rh5CG082100 Rh5CG257800 Rh5DG070000
rosa_wichuraiana Rw5G006850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 273
AciI CCGC 3 cut(s) 6, 342, 363
AclI AACGTT 1 cut(s) 175
AclWI GGATC 1 cut(s) 332
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 2 cut(s) 290, 335
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 373
AluBI AGCT 4 cut(s) 155, 196, 238, 518
AluI AGCT 4 cut(s) 155, 196, 238, 518
Alw21I GWGCWC 1 cut(s) 520
AlwI GGATC 1 cut(s) 332
AoxI GGCC 2 cut(s) 3, 460
ApeKI GCWGC 5 cut(s) 8, 11, 258, 293, 338
AspLEI GCGC 2 cut(s) 263, 304
AspS9I GGNCC 1 cut(s) 460
AsuII TTCGAA 1 cut(s) 48
BanII GRGCYC 1 cut(s) 520
BbrPI CACGTG 2 cut(s) 290, 335
Bbv12I GWGCWC 1 cut(s) 520
BbvCI CCTCAGC 2 cut(s) 156, 351
BbvI GCAGC 5 cut(s) 20, 23, 270, 280, 325
BccI CCATC 2 cut(s) 542, 558
BcgI CGANNNNNNTGC 2 cut(s) 504, 538
BfaI CTAG 3 cut(s) 152, 305, 476
BfoI RGCGCY 2 cut(s) 264, 305
BglI GCCNNNNNGGC 1 cut(s) 347
BisI GCNGC 8 cut(s) 6, 9, 12, 259, 294, 339, 342, 363
BlsI GCNGC 8 cut(s) 7, 10, 13, 260, 295, 340, 343, 364
BmgT120I GGNCC 1 cut(s) 460
BmiI GGNNCC 1 cut(s) 117
BmsI GCATC 3 cut(s) 86, 268, 378
Bpu10I CCTNAGC 2 cut(s) 156, 351
Bpu14I TTCGAA 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 494
BsaAI YACGTR 2 cut(s) 290, 335
BsaJI CCNNGG 1 cut(s) 345
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 223
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 2 cut(s) 534, 550
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMI GCAATG 1 cut(s) 223
BseMII CTCAG 3 cut(s) 147, 203, 342
BseRI GAGGAG 2 cut(s) 111, 389
BseXI GCAGC 5 cut(s) 20, 23, 270, 280, 325
BsgI GTGCAG 1 cut(s) 488
BshFI GGCC 2 cut(s) 5, 462
BsiHKAI GWGCWC 1 cut(s) 520
BslI CCNNNNNNNGG 1 cut(s) 373
BsnI GGCC 2 cut(s) 5, 462
Bsp119I TTCGAA 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 520
Bsp143I GATC 1 cut(s) 324
BspACI CCGC 3 cut(s) 6, 342, 363
BspANI GGCC 2 cut(s) 5, 462
BspCNI CTCAG 3 cut(s) 148, 204, 343
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 117
BspPI GGATC 1 cut(s) 332
BspQI GCTCTTC 1 cut(s) 106
BspT104I TTCGAA 1 cut(s) 48
BsrDI GCAATG 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 106
BstBAI YACGTR 2 cut(s) 290, 335
BstBI TTCGAA 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 497, 516
BstDEI CTNAG 4 cut(s) 156, 212, 351, 542
BstF5I GGATG 2 cut(s) 534, 550
BstH2I RGCGCY 2 cut(s) 264, 305
BstHHI GCGC 2 cut(s) 263, 304
BstKTI GATC 1 cut(s) 327
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 5 cut(s) 11, 267, 299, 347, 511
BstV1I GCAGC 5 cut(s) 20, 23, 270, 280, 325
BsuRI GGCC 2 cut(s) 5, 462
BtsCI GGATG 2 cut(s) 534, 550
Cac8I GCNNGC 2 cut(s) 497, 516
CciI TCATGA 1 cut(s) 202
CfoI GCGC 2 cut(s) 263, 304
Cfr13I GGNCC 1 cut(s) 460
CseI GACGC 2 cut(s) 259, 431
Csp6I GTAC 1 cut(s) 61
CviAII CATG 4 cut(s) 203, 320, 328, 557
CviJI RGCY 9 cut(s) 5, 155, 196, 238, 350, 362, 462, 495, 518
CviKI_1 RGCY 9 cut(s) 5, 155, 196, 238, 350, 362, 462, 495, 518
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 4 cut(s) 156, 212, 351, 542
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 518
Eco24I GRGCYC 1 cut(s) 520
Eco53kI GAGCTC 1 cut(s) 518
Eco72I CACGTG 2 cut(s) 290, 335
EcoICRI GAGCTC 1 cut(s) 518
EcoT38I GRGCYC 1 cut(s) 520
FaeI CATG 4 cut(s) 206, 323, 331, 560
FaiI YATR 8 cut(s) 129, 204, 321, 329, 386, 428, 492, 558
FatI CATG 4 cut(s) 202, 319, 327, 556
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 8 cut(s) 6, 9, 12, 259, 294, 339, 342, 363
FokI GGATG 2 cut(s) 521, 537
FriOI GRGCYC 1 cut(s) 520
Fsp4HI GCNGC 8 cut(s) 6, 9, 12, 259, 294, 339, 342, 363
FspBI CTAG 3 cut(s) 152, 305, 476
GlaI GCGC 2 cut(s) 262, 303
GluI GCNGC 8 cut(s) 6, 9, 12, 259, 294, 339, 342, 363
HaeII RGCGCY 2 cut(s) 264, 305
HaeIII GGCC 2 cut(s) 5, 462
HgaI GACGC 2 cut(s) 259, 431
HhaI GCGC 2 cut(s) 263, 304
Hin1II CATG 4 cut(s) 206, 323, 331, 560
Hin6I GCGC 2 cut(s) 261, 302
HinP1I GCGC 2 cut(s) 261, 302
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 3 cut(s) 199, 208, 430
Hpy166II GTNNAC 2 cut(s) 61, 274
Hpy188I TCNGA 3 cut(s) 182, 213, 435
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 2 cut(s) 61, 274
Hpy99I CGWCG 3 cut(s) 150, 275, 278
HpyAV CCTTC 2 cut(s) 75, 364
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4IV ACGT 3 cut(s) 175, 289, 334
HpyCH4V TGCA 4 cut(s) 296, 499, 505, 525
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 267, 299, 347, 511
HpyF3I CTNAG 4 cut(s) 156, 212, 351, 542
HpySE526I ACGT 3 cut(s) 175, 289, 334
Hsp92II CATG 4 cut(s) 206, 323, 331, 560
HspAI GCGC 2 cut(s) 261, 302
Kzo9I GATC 1 cut(s) 324
LguI GCTCTTC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 4 cut(s) 183, 280, 380, 443
Lsp1109I GCAGC 5 cut(s) 20, 23, 270, 280, 325
LweI GCATC 3 cut(s) 86, 268, 378
MaeI CTAG 3 cut(s) 152, 305, 476
MaeII ACGT 3 cut(s) 175, 289, 334
MaeIII GTNAC 3 cut(s) 133, 285, 330
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 4 cut(s) 62, 65, 93, 96
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 1 cut(s) 72
MlyI GAGTC 1 cut(s) 193
MseI TTAA 1 cut(s) 447
MslI CAYNNNNRTG 1 cut(s) 555
MwoI GCNNNNNNNGC 5 cut(s) 11, 267, 299, 347, 511
NdeII GATC 1 cut(s) 324
NlaIII CATG 4 cut(s) 206, 323, 331, 560
NlaIV GGNNCC 1 cut(s) 117
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 3 cut(s) 133, 285, 330
NspV TTCGAA 1 cut(s) 48
PagI TCATGA 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 208, 430
PkrI GCNGC 8 cut(s) 7, 10, 13, 260, 295, 340, 343, 364
PleI GAGTC 1 cut(s) 193
PmaCI CACGTG 2 cut(s) 290, 335
PmlI CACGTG 2 cut(s) 290, 335
PpsI GAGTC 1 cut(s) 193
Ppu21I YACGTR 2 cut(s) 290, 335
Psp124BI GAGCTC 1 cut(s) 520
Psp1406I AACGTT 1 cut(s) 175
PspCI CACGTG 2 cut(s) 290, 335
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 460
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
RseI CAYNNNNRTG 1 cut(s) 555
SacI GAGCTC 1 cut(s) 520
SalI GTCGAC 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 8 cut(s) 6, 9, 12, 259, 294, 339, 342, 363
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 1 cut(s) 460
SchI GAGTC 1 cut(s) 193
SduI GDGCHC 1 cut(s) 520
SfaNI GCATC 3 cut(s) 86, 268, 378
SfuI TTCGAA 1 cut(s) 48
SgrDI CGTCGACG 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 1 cut(s) 72
SsiI CCGC 3 cut(s) 6, 342, 363
SspMI CTAG 3 cut(s) 152, 305, 476
SstI GAGCTC 1 cut(s) 520
TaaI ACNGT 1 cut(s) 115
TaiI ACGT 3 cut(s) 178, 292, 337
TaqI TCGA 3 cut(s) 48, 94, 273
TasI AATT 1 cut(s) 72
TauI GCSGC 3 cut(s) 8, 344, 365
TfiI GAWTC 2 cut(s) 208, 430
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TseFI GTSAC 3 cut(s) 133, 285, 330
TseI GCWGC 5 cut(s) 8, 11, 258, 293, 338
Tsp45I GTSAC 3 cut(s) 133, 285, 330
TspDTI ATGAA 2 cut(s) 57, 65
XmiI GTMKAC 1 cut(s) 273
XspI CTAG 3 cut(s) 152, 305, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.