FvH4_6g20801

Ubiquitin system component Cue protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016864
Physical Location & Seq
Forward (+)
14335119 .. 14335709
591 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20801.t1

Sequence Viewer

Length: 591 bp
ATGGCTGCAGCACTTGTTCTGTGTGGAAACAAGAGGTCGTTCTTCCAAGACGATGTGTTACCTTCATCGCTTCATCTTTCAAAAAGACTTCGATGCTCTTCTTCTTCTTCTTCTTCAATTCCTCCTCAACGTGTCACTCCACTTCGTCGTCCCGCTGAGGAAACCGAACCTGAACGTTTCGGAAAGAGAGCCAAGATGACTCATCATGAGAATCTGAGTGCGGAGGAATGGGCTGAGCTGTTTGTTGGAGAGATGAGCAGCGCCACCAGCGTCGACGATGCCAAGGCACGGGCCGCAAACGCGCTACAGGTCTTTGAGCAATTGATCAGGTCACGTGCTGCCGCCGAGGCTGAGGTGGTAACCGCCCAGAAGGAGAAGGAGAATATGGTGTTGAAACAAGAAAACCAAGAAATGAAAGAGGAGAATATGATTCTGAACGAGCGTCTTAAAGAAACTGAGGGCCGAAACCAAGAATATAAGAAGCGAGTGAGTACACTTGAAGTTGACAAATATGGCTTGCAACTGCACCTCATGCAAGCACAGCAATGCAACACATCTATCCCTTTAGGTTTCCATCCTCGTGTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

197

Amino Acids

22.23

Weight (kDa)

6.98

Isoelectric Point (pI)

56.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016864)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g38860 FvH4_6g20801
rosa_chinensis RchiOBHm_Chr5g0009411
rosa_laevigata RLG00000031659
rosa_multiflora Rmu_co7974186.1_g000001
rosa_roxburghii Rroxscaffold_1G00067390
rosa_rugosa Rorug04G0442700
rosa_samantha Rh5AG073300 Rh5AG073900 Rh5BG069700 Rh5CG082100 Rh5CG257800 Rh5DG070000
rosa_wichuraiana Rw5G006850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 273
AccII CGCG 1 cut(s) 302
AciI CCGC 5 cut(s) 153, 221, 294, 342, 363
AclI AACGTT 1 cut(s) 175
AcvI CACGTG 1 cut(s) 335
AfaI GTAC 1 cut(s) 493
AfiI CCNNNNNNNGG 1 cut(s) 288
AflIII ACRYGT 1 cut(s) 130
AgsI TTSAA 4 cut(s) 81, 117, 394, 500
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
AoxI GGCC 2 cut(s) 291, 460
ApeKI GCWGC 4 cut(s) 5, 8, 258, 338
AspLEI GCGC 2 cut(s) 263, 304
AspS9I GGNCC 2 cut(s) 291, 460
BauI CACGAG 1 cut(s) 579
BbrPI CACGTG 1 cut(s) 335
BbvCI CCTCAGC 2 cut(s) 156, 351
BbvI GCAGC 3 cut(s) 20, 270, 325
BccI CCATC 1 cut(s) 582
BclI TGATCA 1 cut(s) 324
BfmI CTRYAG 2 cut(s) 6, 305
BfoI RGCGCY 1 cut(s) 264
BglI GCCNNNNNGGC 1 cut(s) 347
BisI GCNGC 6 cut(s) 6, 9, 259, 294, 339, 342
BlpI GCTNAGC 1 cut(s) 234
BlsI GCNGC 6 cut(s) 7, 10, 260, 295, 340, 343
BmgT120I GGNCC 2 cut(s) 291, 460
BmsI GCATC 2 cut(s) 83, 268
Bpu10I CCTNAGC 2 cut(s) 156, 351
Bpu1102I GCTNAGC 1 cut(s) 234
BsaAI YACGTR 1 cut(s) 335
BsaJI CCNNGG 2 cut(s) 282, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 551
BseDI CCNNGG 2 cut(s) 282, 345
BseGI GGATG 1 cut(s) 574
BseLI CCNNNNNNNGG 1 cut(s) 288
BseMI GCAATG 1 cut(s) 551
BseMII CTCAG 5 cut(s) 147, 206, 225, 342, 447
BseRI GAGGAG 2 cut(s) 114, 434
BseXI GCAGC 3 cut(s) 20, 270, 325
BsgI GTGCAG 1 cut(s) 509
Bsh1236I CGCG 1 cut(s) 302
BshFI GGCC 2 cut(s) 293, 462
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 135
BsnI GGCC 2 cut(s) 293, 462
Bsp143I GATC 1 cut(s) 324
Bsp1720I GCTNAGC 1 cut(s) 234
BspACI CCGC 5 cut(s) 153, 221, 294, 342, 363
BspANI GGCC 2 cut(s) 293, 462
BspCNI CTCAG 5 cut(s) 148, 207, 226, 343, 448
BspFNI CGCG 1 cut(s) 302
BspHI TCATGA 1 cut(s) 205
BspMAI CTGCAG 1 cut(s) 10
BspQI GCTCTTC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 551
BssECI CCNNGG 2 cut(s) 282, 345
BssMI GATC 1 cut(s) 324
BssSI CACGAG 1 cut(s) 579
BssT1I CCWWGG 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 579
Bst6I CTCTTC 1 cut(s) 103
BstAPI GCANNNNNTGC 1 cut(s) 532
BstBAI YACGTR 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 518, 537
BstDEI CTNAG 5 cut(s) 156, 215, 234, 351, 456
BstEII GGTNACC 1 cut(s) 358
BstF5I GGATG 1 cut(s) 574
BstFNI CGCG 1 cut(s) 302
BstH2I RGCGCY 1 cut(s) 264
BstHHI GCGC 2 cut(s) 263, 304
BstKTI GATC 1 cut(s) 327
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 6 cut(s) 267, 293, 299, 347, 532, 541
BstPI GGTNACC 1 cut(s) 358
BstSFI CTRYAG 2 cut(s) 6, 305
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 3 cut(s) 20, 270, 325
BsuRI GGCC 2 cut(s) 293, 462
BtgZI GCGATG 1 cut(s) 51
BtsCI GGATG 1 cut(s) 574
Cac8I GCNNGC 2 cut(s) 518, 537
CciI TCATGA 1 cut(s) 205
CfoI GCGC 2 cut(s) 263, 304
Cfr13I GGNCC 2 cut(s) 291, 460
CseI GACGC 2 cut(s) 259, 431
Csp6I GTAC 1 cut(s) 492
CviAII CATG 2 cut(s) 206, 532
CviJI RGCY 8 cut(s) 5, 191, 233, 238, 293, 350, 462, 516
CviKI_1 RGCY 8 cut(s) 5, 191, 233, 238, 293, 350, 462, 516
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 5 cut(s) 156, 215, 234, 351, 456
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 282
Eco72I CACGTG 1 cut(s) 335
Eco91I GGTNACC 1 cut(s) 358
EcoO65I GGTNACC 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 2 cut(s) 209, 535
FaiI YATR 6 cut(s) 207, 386, 428, 477, 513, 533
FaqI GGGAC 1 cut(s) 135
FatI CATG 2 cut(s) 205, 531
FauI CCCGC 1 cut(s) 160
FbaI TGATCA 1 cut(s) 324
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 6 cut(s) 6, 9, 259, 294, 339, 342
FokI GGATG 1 cut(s) 561
Fsp4HI GCNGC 6 cut(s) 6, 9, 259, 294, 339, 342
GlaI GCGC 2 cut(s) 262, 303
GluI GCNGC 6 cut(s) 6, 9, 259, 294, 339, 342
HaeII RGCGCY 1 cut(s) 264
HaeIII GGCC 2 cut(s) 293, 462
HgaI GACGC 2 cut(s) 259, 431
HhaI GCGC 2 cut(s) 263, 304
Hin1II CATG 2 cut(s) 209, 535
Hin6I GCGC 2 cut(s) 261, 302
HinP1I GCGC 2 cut(s) 261, 302
HincII GTYRAC 2 cut(s) 274, 505
HindII GTYRAC 2 cut(s) 274, 505
HinfI GANTC 3 cut(s) 199, 211, 430
Hpy166II GTNNAC 3 cut(s) 274, 494, 505
Hpy188I TCNGA 3 cut(s) 182, 216, 435
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 3 cut(s) 274, 494, 505
Hpy99I CGWCG 3 cut(s) 150, 275, 278
HpyAV CCTTC 3 cut(s) 72, 364, 370
HpyCH4IV ACGT 3 cut(s) 130, 175, 334
HpyCH4V TGCA 5 cut(s) 8, 520, 526, 535, 549
HpyF10VI GCNNNNNNNGC 6 cut(s) 267, 293, 299, 347, 532, 541
HpyF3I CTNAG 5 cut(s) 156, 215, 234, 351, 456
HpySE526I ACGT 3 cut(s) 130, 175, 334
Hsp92II CATG 2 cut(s) 209, 535
HspAI GCGC 2 cut(s) 261, 302
Ksp22I TGATCA 1 cut(s) 324
Kzo9I GATC 1 cut(s) 324
LguI GCTCTTC 1 cut(s) 103
LpnPI CCDG 5 cut(s) 183, 280, 293, 313, 380
Lsp1109I GCAGC 3 cut(s) 20, 270, 325
LweI GCATC 2 cut(s) 83, 268
MaeII ACGT 3 cut(s) 130, 175, 334
MaeIII GTNAC 4 cut(s) 57, 133, 330, 358
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 7 cut(s) 34, 90, 93, 96, 99, 102, 105
MfeI CAATTG 1 cut(s) 320
MluCI AATT 2 cut(s) 117, 320
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 226
MseI TTAA 1 cut(s) 447
MslI CAYNNNNRTG 2 cut(s) 544, 579
MspA1I CMGCKG 1 cut(s) 155
MunI CAATTG 1 cut(s) 320
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 6 cut(s) 267, 293, 299, 347, 532, 541
NdeII GATC 1 cut(s) 324
NlaIII CATG 2 cut(s) 209, 535
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 2 cut(s) 133, 330
PagI TCATGA 1 cut(s) 205
PciSI GCTCTTC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 211, 430
PkrI GCNGC 6 cut(s) 7, 10, 260, 295, 340, 343
PleI GAGTC 1 cut(s) 193
PmaCI CACGTG 1 cut(s) 335
PmlI CACGTG 1 cut(s) 335
PpsI GAGTC 1 cut(s) 193
Ppu21I YACGTR 1 cut(s) 335
Psp1406I AACGTT 1 cut(s) 175
PspCI CACGTG 1 cut(s) 335
PspEI GGTNACC 1 cut(s) 358
PspPI GGNCC 2 cut(s) 291, 460
PstI CTGCAG 1 cut(s) 10
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
RseI CAYNNNNRTG 2 cut(s) 544, 579
SalI GTCGAC 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 6 cut(s) 6, 9, 259, 294, 339, 342
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 2 cut(s) 291, 460
SchI GAGTC 1 cut(s) 193
SfaNI GCATC 2 cut(s) 83, 268
SfcI CTRYAG 2 cut(s) 6, 305
SgrDI CGTCGACG 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 544, 579
Sse9I AATT 2 cut(s) 117, 320
SsiI CCGC 5 cut(s) 153, 221, 294, 342, 363
StyI CCWWGG 1 cut(s) 282
TaiI ACGT 3 cut(s) 133, 178, 337
TaqI TCGA 2 cut(s) 91, 273
TasI AATT 2 cut(s) 117, 320
TatI WGTACW 1 cut(s) 491
TauI GCSGC 2 cut(s) 296, 344
TfiI GAWTC 2 cut(s) 211, 430
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TseFI GTSAC 2 cut(s) 133, 330
TseI GCWGC 4 cut(s) 5, 8, 258, 338
Tsp45I GTSAC 2 cut(s) 133, 330
TspDTI ATGAA 3 cut(s) 54, 62, 428
XmiI GTMKAC 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.