Rmu_co7974186.1_g000001

Ubiquitin system component Cue protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7974186.1
OG0016864
Physical Location & Seq
Reverse (-)
2 .. 391
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7974186.1_g000001.1.cds

Sequence Viewer

Length: 390 bp
atggctgcagcagtagttctatgcggaaacaagaggtcattcttcgaagaagatgtgtttccttcatcgcttcatcgatccaaaagacttcgatgctcttcttcttcggttcctcctcaacatgtcaatcaacttcgtcgtcccgctgaggaacccgaacctgatcgtttcggaaagagagcgaaactgactaatgagaatctgaacaataaccttaatggtgcggaggaatgggtcgagttgtttgttagagagatgagcagtgccaccagcgtcgacgatgccaaggcacgtactgcaaaggcgcttgaggtctttgaacaatggatcagttcacgtactgccgccgaggctgaggtggcagccgcccagaaggaggaggagaatatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

130

Amino Acids

14.58

Weight (kDa)

5.5

Isoelectric Point (pI)

68.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016864)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g38860 FvH4_6g20801
rosa_chinensis RchiOBHm_Chr5g0009411
rosa_laevigata RLG00000031659
rosa_multiflora Rmu_co7974186.1_g000001
rosa_roxburghii Rroxscaffold_1G00067390
rosa_rugosa Rorug04G0442700
rosa_samantha Rh5AG073300 Rh5AG073900 Rh5BG069700 Rh5CG082100 Rh5CG257800 Rh5DG070000
rosa_wichuraiana Rw5G006850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 276
AciI CCGC 5 cut(s) 24, 144, 224, 345, 366
AclWI GGATC 2 cut(s) 72, 335
AfaI GTAC 2 cut(s) 295, 340
AfiI CCNNNNNNNGG 1 cut(s) 376
AflIII ACRYGT 1 cut(s) 121
AgsI TTSAA 1 cut(s) 320
AlwI GGATC 2 cut(s) 72, 335
ApeKI GCWGC 3 cut(s) 5, 8, 362
AspLEI GCGC 1 cut(s) 307
AsuII TTCGAA 1 cut(s) 45
BbvCI CCTCAGC 2 cut(s) 147, 354
BbvI GCAGC 2 cut(s) 20, 374
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 308
BglI GCCNNNNNGGC 1 cut(s) 350
BisI GCNGC 5 cut(s) 6, 9, 345, 363, 366
BlsI GCNGC 5 cut(s) 7, 10, 346, 364, 367
BmiI GGNNCC 2 cut(s) 111, 153
BmsI GCATC 2 cut(s) 83, 271
Bpu10I CCTNAGC 2 cut(s) 147, 354
Bpu14I TTCGAA 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 329
Bsa29I ATCGAT 1 cut(s) 76
BsaAI YACGTR 2 cut(s) 293, 338
BsaJI CCNNGG 2 cut(s) 285, 348
Bsc4I CCNNNNNNNGG 1 cut(s) 376
BseCI ATCGAT 1 cut(s) 76
BseDI CCNNGG 2 cut(s) 285, 348
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMII CTCAG 2 cut(s) 138, 345
BseRI GAGGAG 1 cut(s) 105
BseXI GCAGC 2 cut(s) 20, 374
BshVI ATCGAT 1 cut(s) 76
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 126
Bsp119I TTCGAA 1 cut(s) 45
Bsp143I GATC 3 cut(s) 77, 163, 327
BspACI CCGC 5 cut(s) 24, 144, 224, 345, 366
BspCNI CTCAG 2 cut(s) 139, 346
BspDI ATCGAT 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 111, 153
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 2 cut(s) 72, 335
BspQI GCTCTTC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 45
BssECI CCNNGG 2 cut(s) 285, 348
BssMI GATC 3 cut(s) 77, 163, 327
BssT1I CCWWGG 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 103
BstAPI GCANNNNNTGC 1 cut(s) 296
BstBAI YACGTR 2 cut(s) 293, 338
BstBI TTCGAA 1 cut(s) 45
BstDEI CTNAG 2 cut(s) 147, 354
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 3 cut(s) 80, 166, 330
BstMBI GATC 3 cut(s) 77, 163, 327
BstMWI GCNNNNNNNGC 3 cut(s) 296, 350, 359
BstNSI RCATGY 1 cut(s) 125
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 2 cut(s) 20, 374
Bsu15I ATCGAT 1 cut(s) 76
BsuTUI ATCGAT 1 cut(s) 76
BtgZI GCGATG 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 268
CfoI GCGC 1 cut(s) 307
ClaI ATCGAT 1 cut(s) 76
CseI GACGC 1 cut(s) 262
Csp6I GTAC 2 cut(s) 294, 339
CviAII CATG 1 cut(s) 122
CviJI RGCY 3 cut(s) 5, 353, 365
CviKI_1 RGCY 3 cut(s) 5, 353, 365
CviQI GTAC 2 cut(s) 294, 339
DdeI CTNAG 2 cut(s) 147, 354
DpnI GATC 3 cut(s) 79, 165, 329
DpnII GATC 3 cut(s) 77, 163, 327
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 1 cut(s) 125
FaiI YATR 3 cut(s) 22, 123, 389
FaqI GGGAC 1 cut(s) 126
FatI CATG 1 cut(s) 121
FauI CCCGC 1 cut(s) 151
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 5 cut(s) 6, 9, 345, 363, 366
Fsp4HI GCNGC 5 cut(s) 6, 9, 345, 363, 366
GlaI GCGC 1 cut(s) 306
GluI GCNGC 5 cut(s) 6, 9, 345, 363, 366
HaeII RGCGCY 1 cut(s) 308
HgaI GACGC 1 cut(s) 262
HhaI GCGC 1 cut(s) 307
Hin1II CATG 1 cut(s) 125
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 1 cut(s) 199
Hpy166II GTNNAC 2 cut(s) 277, 335
Hpy188I TCNGA 2 cut(s) 173, 204
Hpy8I GTNNAC 2 cut(s) 277, 335
Hpy99I CGWCG 3 cut(s) 141, 278, 281
HpyAV CCTTC 2 cut(s) 72, 367
HpyCH4IV ACGT 2 cut(s) 292, 337
HpyCH4V TGCA 2 cut(s) 8, 299
HpyF10VI GCNNNNNNNGC 3 cut(s) 296, 350, 359
HpyF3I CTNAG 2 cut(s) 147, 354
HpySE526I ACGT 2 cut(s) 292, 337
Hsp92II CATG 1 cut(s) 125
HspAI GCGC 1 cut(s) 305
Kzo9I GATC 3 cut(s) 77, 163, 327
LguI GCTCTTC 1 cut(s) 103
LpnPI CCDG 3 cut(s) 174, 283, 383
Lsp1109I GCAGC 2 cut(s) 20, 374
LweI GCATC 2 cut(s) 83, 271
MaeII ACGT 2 cut(s) 292, 337
MalI GATC 3 cut(s) 79, 165, 329
MboI GATC 3 cut(s) 77, 163, 327
MboII GAAGA 6 cut(s) 34, 59, 62, 90, 93, 96
MseI TTAA 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 146
MwoI GCNNNNNNNGC 3 cut(s) 296, 350, 359
NdeII GATC 3 cut(s) 77, 163, 327
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 2 cut(s) 111, 153
NmeAIII GCCGAG 1 cut(s) 373
NspI RCATGY 1 cut(s) 125
NspV TTCGAA 1 cut(s) 45
PciI ACATGT 1 cut(s) 121
PciSI GCTCTTC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 5 cut(s) 7, 10, 346, 364, 367
Ppu21I YACGTR 2 cut(s) 293, 338
PscI ACATGT 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 111, 153
PstI CTGCAG 1 cut(s) 10
RsaI GTAC 2 cut(s) 295, 340
RsaNI GTAC 2 cut(s) 294, 339
SalI GTCGAC 1 cut(s) 275
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 5 cut(s) 6, 9, 345, 363, 366
Sau3AI GATC 3 cut(s) 77, 163, 327
SetI ASST 7 cut(s) 38, 163, 216, 295, 315, 340, 360
SfaNI GCATC 2 cut(s) 83, 271
SfcI CTRYAG 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 45
SgrDI CGTCGACG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
SsiI CCGC 5 cut(s) 24, 144, 224, 345, 366
StyI CCWWGG 1 cut(s) 285
TaiI ACGT 2 cut(s) 295, 340
TaqI TCGA 5 cut(s) 45, 76, 91, 237, 276
TauI GCSGC 2 cut(s) 347, 368
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 268
TseI GCWGC 3 cut(s) 5, 8, 362
TspDTI ATGAA 2 cut(s) 54, 62
TspRI CASTG 1 cut(s) 268
XceI RCATGY 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.