FvH4_6g00040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017316
Physical Location & Seq
Forward (+)
33845 .. 44476
10632 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00040.t1

Sequence Viewer

Length: 1224 bp
ATGCCACTCACCAGTGGGCGACGACGGATCAAGCGGCAGGAGACAGATCATCATCCTGCAGATCAAGATCTTATTCTCTTTCAGGAATTGCACAAGCGCGAAAAAGAACGCAATATTGTCACCCTCCTCCAGCCTGTTTCTGAAGAGTTTGAGCCAAATGGAAACCATCAGCTCTACAGAATTGCATCTGCCAAGAAAGGATCTGGATTTGAATCTCTTGCTGAAAACGAGAAGAATGATTATGACTGGTTAAAAACACCTCCAGCAACTCCTCTGTTTCCATCTTTAGAAATGGACGCAAATGGCCCTGAATTCATTATCCAACGGGAAATACCGATTCTCCAACCTCGGTCACGGTTTGCAGTTGTCACCAGTTGCAAGCTAGAGGCGGCAGATAAGAAAAGCTCGGGGAGACCAAAATCTAGAAACCCAATTTCAAAAGTCCCCTTGAGGTCCGTCACGCCAAGTACTCAAAGACGAAGCACAGCAGTATCAGATTCAACGAATCAAATTAACATCACCAAAGCTGCAGTAATAACTAGAACAGATGTACCAATTTTGAACCAGCAGAAAGCAAGCAAATCGGTTGTTGATCATAATGACATGATCATCAGAAGGAAAACAAAGCCTACAACGACATGTAGAAGTGCTGTTGAGTCCCCTTTTCCTCTAGTGAGATCAACAAATACTATTCTCCCTTGCTTTTCGAACGAGAAACCGCCTAATCTGAGGATAGAGCAACGCTCACTATCTGCTACACGGGATCGATCAGTTCAGGCCAAATCAGCTACAACACATGTAAGTACTCACCTGCAAAGATCAACATGCACAGCTGATCCGAGGAGACCGCAATCATGCTCATCAATTGCAAGTATCTCTAGGGATCGAAAAGTAGTCGGTAGTAGTGTTGAAGGGAACATGCAACTGGATATCAAGAAATGTATTGTCAATGAAGGTGATATGATCAATACCAGTAGTCCAAAAGAAAAGAGAAGTAATCAAACAAGAAACGAGCGGCAAGTATTGGGAAGTAGGATGGTACAGAGAGTCATGAGCGCAAGATCTAAAGCAACTACTCTTGAAGAAAAAAATAAGATACCGAATTCTCGGTTTCCACTTCATGAAACCTCTGGATTTGGAAGAATGATTCTTAAGAGTTCAATGGATACAACTCTCAAGCATTTGGTACCGGTGGCGCCAAAGCTAAAACGGGATGGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 map00562
Pfam Domains
Protein Families
No domains found.

Protein Analysis

408

Amino Acids

45.67

Weight (kDa)

10.18

Isoelectric Point (pI)

63.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017316)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00040
prunus_persica Prupe.6G365700_v2.0.a1
pyrus_communis pycom12g24270
rosa_laevigata RLG00000026006
rosa_multiflora Rmu_ssc0000473.1_g000006
rosa_roxburghii Rroxscaffold_6G00425540
rosa_rugosa Rorug02G0600400 Rorug02G0600500
rosa_samantha Rh3AG000600 Rh3BG000400 Rh3CG000400 Rh3DG000600
rosa_wichuraiana Rw3G000040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 819
Acc36I ACCTGC 1 cut(s) 819
Acc65I GGTACC 1 cut(s) 1186
AccB1I GGYRCC 2 cut(s) 1186, 1195
AccBSI CCGCTC 1 cut(s) 1015
AccII CGCG 1 cut(s) 99
AciI CCGC 5 cut(s) 34, 389, 719, 848, 1015
AclWI GGATC 5 cut(s) 35, 208, 771, 830, 891
AcsI RAATTY 2 cut(s) 311, 1102
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 1196
AfaI GTAC 5 cut(s) 469, 552, 805, 1041, 1188
AflII CTTAAG 1 cut(s) 1151
AflIII ACRYGT 2 cut(s) 638, 796
AgeI ACCGGT 1 cut(s) 1189
AgsI TTSAA 7 cut(s) 212, 438, 501, 562, 911, 1082, 1161
AluBI AGCT 7 cut(s) 172, 382, 405, 527, 788, 833, 1204
AluI AGCT 7 cut(s) 172, 382, 405, 527, 788, 833, 1204
Alw26I GTCTC 3 cut(s) 35, 406, 838
AlwI GGATC 5 cut(s) 35, 208, 771, 830, 891
Ama87I CYCGRG 1 cut(s) 406
AoxI GGCC 2 cut(s) 304, 777
ApeKI GCWGC 1 cut(s) 527
ApoI RAATTY 2 cut(s) 311, 1102
AsiGI ACCGGT 1 cut(s) 1189
Asp718I GGTACC 1 cut(s) 1186
AspLEI GCGC 3 cut(s) 99, 1058, 1198
AspS9I GGNCC 2 cut(s) 305, 453
AsuHPI GGTGA 5 cut(s) 112, 361, 511, 800, 968
AsuII TTCGAA 1 cut(s) 707
AvaI CYCGRG 1 cut(s) 406
AvaII GGWCC 1 cut(s) 453
BaeI ACNNNNGTAYC 4 cut(s) 474, 507, 534, 567
BanI GGYRCC 2 cut(s) 1186, 1195
BbvI GCAGC 1 cut(s) 514
BccI CCATC 4 cut(s) 174, 289, 1030, 1208
BcgI CGANNNNNNTGC 2 cut(s) 564, 598
BciVI GTATCC 1 cut(s) 1159
BclI TGATCA 3 cut(s) 592, 606, 963
BcoDI GTCTC 3 cut(s) 35, 406, 838
BfaI CTAG 5 cut(s) 383, 423, 540, 671, 879
BfmI CTRYAG 3 cut(s) 57, 175, 528
BfoI RGCGCY 1 cut(s) 1199
BfrI CTTAAG 1 cut(s) 1151
BfuAI ACCTGC 1 cut(s) 819
BfuI GTATCC 1 cut(s) 1159
BglII AGATCT 2 cut(s) 67, 1061
BisI GCNGC 4 cut(s) 35, 390, 528, 1016
BlsI GCNGC 4 cut(s) 36, 391, 529, 1017
BmcAI AGTACT 2 cut(s) 469, 805
Bme18I GGWCC 1 cut(s) 453
BmeT110I CYCGRG 1 cut(s) 406
BmgT120I GGNCC 2 cut(s) 305, 453
BmiI GGNNCC 2 cut(s) 1188, 1197
BmsI GCATC 1 cut(s) 194
BplI GAGNNNNNCTC 2 cut(s) 728, 760
BpmI CTGGAG 2 cut(s) 113, 246
Bpu14I TTCGAA 1 cut(s) 707
BpuEI CTTGAG 2 cut(s) 469, 1160
Bsa29I ATCGAT 1 cut(s) 766
BsaBI GATNNNNATC 3 cut(s) 51, 66, 211
BsaHI GRCGYC 1 cut(s) 1196
BsaI GGTCTC 2 cut(s) 406, 838
BsaJI CCNNGG 2 cut(s) 347, 839
BsaWI WCCGGW 1 cut(s) 1189
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bse118I RCCGGY 1 cut(s) 1189
Bse1I ACTGG 5 cut(s) 12, 251, 372, 930, 972
Bse8I GATNNNNATC 3 cut(s) 51, 66, 211
BseCI ATCGAT 1 cut(s) 766
BseDI CCNNGG 2 cut(s) 347, 839
BseGI GGATG 3 cut(s) 52, 1041, 1219
BseJI GATNNNNATC 3 cut(s) 51, 66, 211
BseMII CTCAG 1 cut(s) 719
BseNI ACTGG 5 cut(s) 12, 251, 372, 930, 972
BseRI GAGGAG 3 cut(s) 116, 261, 856
BseXI GCAGC 1 cut(s) 514
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 306, 779
BshNI GGYRCC 2 cut(s) 1186, 1195
BshTI ACCGGT 1 cut(s) 1189
BshVI ATCGAT 1 cut(s) 766
BsiHKCI CYCGRG 1 cut(s) 406
BsiSI CCGG 1 cut(s) 1190
BslFI GGGAC 2 cut(s) 428, 643
BsmAI GTCTC 3 cut(s) 35, 406, 838
BsmFI GGGAC 2 cut(s) 428, 643
BsnI GGCC 2 cut(s) 306, 779
Bso31I GGTCTC 2 cut(s) 406, 838
BsoBI CYCGRG 1 cut(s) 406
Bsp119I TTCGAA 1 cut(s) 707
BspACI CCGC 5 cut(s) 34, 389, 719, 848, 1015
BspANI GGCC 2 cut(s) 306, 779
BspCNI CTCAG 1 cut(s) 720
BspDI ATCGAT 1 cut(s) 766
BspFNI CGCG 1 cut(s) 99
BspHI TCATGA 2 cut(s) 1050, 1120
BspLI GGNNCC 2 cut(s) 1188, 1197
BspMAI CTGCAG 2 cut(s) 61, 532
BspMI ACCTGC 1 cut(s) 819
BspPI GGATC 5 cut(s) 35, 208, 771, 830, 891
BspT104I TTCGAA 1 cut(s) 707
BspT107I GGYRCC 2 cut(s) 1186, 1195
BspTI CTTAAG 1 cut(s) 1151
BspTNI GGTCTC 2 cut(s) 406, 838
BsrBI CCGCTC 1 cut(s) 1015
BsrFI RCCGGY 1 cut(s) 1189
BsrI ACTGG 5 cut(s) 12, 251, 372, 930, 972
BssAI RCCGGY 1 cut(s) 1189
BssECI CCNNGG 2 cut(s) 347, 839
BssNI GRCGYC 1 cut(s) 1196
Bst4CI ACNGT 1 cut(s) 357
Bst6I CTCTTC 1 cut(s) 138
BstACI GRCGYC 1 cut(s) 1196
BstAFI CTTAAG 1 cut(s) 1151
BstBI TTCGAA 1 cut(s) 707
BstC8I GCNNGC 2 cut(s) 380, 577
BstDEI CTNAG 1 cut(s) 728
BstF5I GGATG 3 cut(s) 52, 1041, 1219
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 1199
BstHHI GCGC 3 cut(s) 99, 1058, 1198
BstMAI GTCTC 3 cut(s) 35, 406, 838
BstMWI GCNNNNNNNGC 1 cut(s) 785
BstNSI RCATGY 4 cut(s) 642, 800, 828, 922
BstSFI CTRYAG 3 cut(s) 57, 175, 528
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 514
BstX2I RGATCY 3 cut(s) 67, 200, 1061
BstYI RGATCY 3 cut(s) 67, 200, 1061
Bsu15I ATCGAT 1 cut(s) 766
BsuI GTATCC 1 cut(s) 1159
BsuRI GGCC 2 cut(s) 306, 779
BsuTUI ATCGAT 1 cut(s) 766
BtsCI GGATG 3 cut(s) 52, 1041, 1219
BtsIMutI CAGTG 1 cut(s) 19
BveI ACCTGC 1 cut(s) 819
Cac8I GCNNGC 2 cut(s) 380, 577
CciI TCATGA 2 cut(s) 1050, 1120
CfoI GCGC 3 cut(s) 99, 1058, 1198
Cfr10I RCCGGY 1 cut(s) 1189
Cfr13I GGNCC 2 cut(s) 305, 453
ClaI ATCGAT 1 cut(s) 766
CseI GACGC 1 cut(s) 305
Csp6I GTAC 5 cut(s) 468, 551, 804, 1040, 1187
CspAI ACCGGT 1 cut(s) 1189
CviAII CATG 8 cut(s) 604, 639, 797, 825, 855, 919, 1051, 1121
CviQI GTAC 5 cut(s) 468, 551, 804, 1040, 1187
DdeI CTNAG 1 cut(s) 728
DinI GGCGCC 1 cut(s) 1197
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco31I GGTCTC 2 cut(s) 406, 838
Eco32I GATATC 1 cut(s) 931
Eco47I GGWCC 1 cut(s) 453
Eco57I CTGAAG 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 406
EcoRI GAATTC 2 cut(s) 311, 1102
EcoRV GATATC 1 cut(s) 931
EgeI GGCGCC 1 cut(s) 1197
EheI GGCGCC 1 cut(s) 1197
FaeI CATG 8 cut(s) 607, 642, 800, 828, 858, 922, 1054, 1124
FaqI GGGAC 2 cut(s) 428, 643
FatI CATG 8 cut(s) 603, 638, 796, 824, 854, 918, 1050, 1120
FbaI TGATCA 3 cut(s) 592, 606, 963
Fnu4HI GCNGC 4 cut(s) 35, 390, 528, 1016
FokI GGATG 2 cut(s) 39, 1048
Fsp4HI GCNGC 4 cut(s) 35, 390, 528, 1016
FspBI CTAG 5 cut(s) 383, 423, 540, 671, 879
GlaI GCGC 3 cut(s) 98, 1057, 1197
GluI GCNGC 4 cut(s) 35, 390, 528, 1016
GsuI CTGGAG 2 cut(s) 113, 246
HaeII RGCGCY 1 cut(s) 1199
HaeIII GGCC 2 cut(s) 306, 779
HapII CCGG 1 cut(s) 1190
HgaI GACGC 1 cut(s) 305
HhaI GCGC 3 cut(s) 99, 1058, 1198
Hin1I GRCGYC 1 cut(s) 1196
Hin1II CATG 8 cut(s) 607, 642, 800, 828, 858, 922, 1054, 1124
Hin6I GCGC 3 cut(s) 97, 1056, 1196
HinP1I GCGC 3 cut(s) 97, 1056, 1196
HinfI GANTC 7 cut(s) 212, 337, 497, 505, 656, 1047, 1147
HpaII CCGG 1 cut(s) 1190
HphI GGTGA 5 cut(s) 112, 361, 511, 800, 968
Hpy188I TCNGA 5 cut(s) 142, 496, 614, 729, 840
Hpy188III TCNNGA 9 cut(s) 65, 83, 204, 423, 934, 1051, 1079, 1121, 1131
Hpy99I CGWCG 2 cut(s) 24, 27
HpyAV CCTTC 3 cut(s) 609, 905, 947
HpyCH4III ACNGT 1 cut(s) 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 785
HpyF3I CTNAG 1 cut(s) 728
Hsp92I GRCGYC 1 cut(s) 1196
Hsp92II CATG 8 cut(s) 607, 642, 800, 828, 858, 922, 1054, 1124
HspAI GCGC 3 cut(s) 97, 1056, 1196
KasI GGCGCC 1 cut(s) 1195
KpnI GGTACC 1 cut(s) 1190
Ksp22I TGATCA 3 cut(s) 592, 606, 963
Lsp1109I GCAGC 1 cut(s) 514
LweI GCATC 1 cut(s) 194
MaeI CTAG 5 cut(s) 383, 423, 540, 671, 879
MaeIII GTNAC 4 cut(s) 118, 351, 367, 457
MbiI CCGCTC 1 cut(s) 1015
MboII GAAGA 4 cut(s) 155, 244, 1094, 1152
MfeI CAATTG 1 cut(s) 864
MflI RGATCY 3 cut(s) 67, 200, 1061
MluCI AATT 8 cut(s) 86, 180, 311, 432, 510, 555, 864, 1102
Mly113I GGCGCC 1 cut(s) 1196
MlyI GAGTC 2 cut(s) 665, 1056
MmeI TCCRAC 2 cut(s) 346, 367
MseI TTAA 3 cut(s) 251, 513, 1152
MspA1I CMGCKG 1 cut(s) 833
MspCI CTTAAG 1 cut(s) 1151
MspI CCGG 1 cut(s) 1190
MunI CAATTG 1 cut(s) 864
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 785
NarI GGCGCC 1 cut(s) 1196
NlaIII CATG 8 cut(s) 607, 642, 800, 828, 858, 922, 1054, 1124
NlaIV GGNNCC 2 cut(s) 1188, 1197
NmuCI GTSAC 4 cut(s) 118, 351, 367, 457
NspI RCATGY 4 cut(s) 642, 800, 828, 922
NspV TTCGAA 1 cut(s) 707
PagI TCATGA 2 cut(s) 1050, 1120
PaqCI CACCTGC 1 cut(s) 819
PciI ACATGT 2 cut(s) 638, 796
PfeI GAWTC 5 cut(s) 212, 337, 497, 505, 1147
PinAI ACCGGT 1 cut(s) 1189
PkrI GCNGC 4 cut(s) 36, 391, 529, 1017
PleI GAGTC 2 cut(s) 664, 1055
PluTI GGCGCC 1 cut(s) 1199
PpsI GAGTC 2 cut(s) 664, 1055
PscI ACATGT 2 cut(s) 638, 796
PspN4I GGNNCC 2 cut(s) 1188, 1197
PspPI GGNCC 2 cut(s) 305, 453
PstI CTGCAG 2 cut(s) 61, 532
PsuI RGATCY 3 cut(s) 67, 200, 1061
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 5 cut(s) 469, 552, 805, 1041, 1188
RsaNI GTAC 5 cut(s) 468, 551, 804, 1040, 1187
SaqAI TTAA 3 cut(s) 251, 513, 1152
SatI GCNGC 4 cut(s) 35, 390, 528, 1016
Sau96I GGNCC 2 cut(s) 305, 453
ScaI AGTACT 2 cut(s) 469, 805
SchI GAGTC 2 cut(s) 665, 1056
SfaNI GCATC 1 cut(s) 194
SfcI CTRYAG 3 cut(s) 57, 175, 528
SfoI GGCGCC 1 cut(s) 1197
SfuI TTCGAA 1 cut(s) 707
SinI GGWCC 1 cut(s) 453
SmlI CTYRAG 3 cut(s) 448, 1151, 1175
SmoI CTYRAG 3 cut(s) 448, 1151, 1175
Sse9I AATT 8 cut(s) 86, 180, 311, 432, 510, 555, 864, 1102
SsiI CCGC 5 cut(s) 34, 389, 719, 848, 1015
SspDI GGCGCC 1 cut(s) 1195
SspI AATATT 1 cut(s) 115
SspMI CTAG 5 cut(s) 383, 423, 540, 671, 879
TaaI ACNGT 1 cut(s) 357
TaqI TCGA 3 cut(s) 707, 766, 886
TaqII GACCGA 1 cut(s) 339
TasI AATT 8 cut(s) 86, 180, 311, 432, 510, 555, 864, 1102
TatI WGTACW 2 cut(s) 467, 803
TauI GCSGC 3 cut(s) 37, 392, 1018
TfiI GAWTC 5 cut(s) 212, 337, 497, 505, 1147
Tru1I TTAA 3 cut(s) 251, 513, 1152
Tru9I TTAA 3 cut(s) 251, 513, 1152
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 4 cut(s) 118, 351, 367, 457
TseI GCWGC 1 cut(s) 527
Tsp45I GTSAC 4 cut(s) 118, 351, 367, 457
TspDTI ATGAA 4 cut(s) 304, 966, 1109, 1137
TspGWI ACGGA 2 cut(s) 40, 445
TspRI CASTG 1 cut(s) 19
Vha464I CTTAAG 1 cut(s) 1151
VpaK11BI GGWCC 1 cut(s) 453
XapI RAATTY 2 cut(s) 311, 1102
XbaI TCTAGA 1 cut(s) 422
XceI RCATGY 4 cut(s) 642, 800, 828, 922
XspI CTAG 5 cut(s) 383, 423, 540, 671, 879
ZrmI AGTACT 2 cut(s) 469, 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.