Rorug02G0600400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017316
Physical Location & Seq
Forward (+)
71980196 .. 71981985
1790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0600400.1

Sequence Viewer

Length: 1107 bp
ATGGGAAGGCCACCTTGCTGTGATAAATCAAATGTGAAGAGGGGACTCTGGACTGCAGCCGAGGATGCGAAACTTCTTGCTTGCGTATCCAAACATGGAGTCGGAAATTGGACTGTGGTTCCTAAGAAAGCAGGATTGAACAGATGTGGGAAGAGCTGCAGGCTTAGGTGGACTAATTACCTCAGGCCTGACCTCAAGCATGACACCTTCACTCCTGAAGAGGAAGAGCATATTATCAACCTTCATAAGGCTATAGGAAGCAGGTGGTCTCTGATTGCAAAGCAACTACCAGGAAGAACAGATAATGATGTGAAGAACTACTGGAATACCAAGCTGAAAAAGAAGCTTTCCAAGATAGGAATCGACCCTGTAACCCACAAACCCATCTCCCAGATCCTGTCTGACTATGGAAACATCACTAGCCTTCCAAACCACATCGGTAACCATTTTGGGCCATCCTTCAACAACAAGTTGAACATGAGCACCACATTTGTACCTGAATCAGATCCATCTTCGGGGATCACAGGACTTGCTTACACCAATATGATGATGATGATGAACCCCATTATGGAGTCACAAGACTATTCTTCTACTAGTACTCTTCCCTTCGGCTTTCTGTCTCAGTTTCGAGCAATGAATCAAGACGACAATGTTTCATTGCCTCCACACTTTTTGAATGAAGTAACTTCCTCTTGCTCATCATCATCTTCTCCTCCTGCTACTGATCTATTGAGCCCGCAATGTCACGCGTCTGCACAAGTTGTCACACCGTCTTCTTCTCCTTTTAATTGGAGTGAGTTCCTTCTCCATGACCCTTTTTCATCCGCAGATCAACCCAAGCAAGAAGAAGTATTTCAAGGACTGCTGGCATCACCAGCCAATCCGACAGTTGGTAATGGAATTCAGTCTCAGGCCTTTGAAGTTGGATCTTCATCAGTCATTAATGGAGGTCCAAGCTTGAACAACAACAAAAATTTGGCTAATGATCACATAGCTTCTGCTTCTTCATCTTCCTTGAGTTCATTTGTGGATACTATCTTAGGTCAAGATAGTGAGATGAGGGCAGCATTGTTCCCTGAACTTTTGGATGGATGTTTTGATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 map00562
Pfam Domains
Protein Families
No domains found.

Protein Analysis

368

Amino Acids

40.16

Weight (kDa)

6.25

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 3.7e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 110 8.9e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 119 6e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017316)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00040
prunus_persica Prupe.6G365700_v2.0.a1
pyrus_communis pycom12g24270
rosa_laevigata RLG00000026006
rosa_multiflora Rmu_ssc0000473.1_g000006
rosa_roxburghii Rroxscaffold_6G00425540
rosa_rugosa Rorug02G0600400 Rorug02G0600500
rosa_samantha Rh3AG000600 Rh3BG000400 Rh3CG000400 Rh3DG000600
rosa_wichuraiana Rw3G000040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 252
Acc36I ACCTGC 1 cut(s) 252
AccII CGCG 1 cut(s) 749
AciI CCGC 2 cut(s) 737, 825
AclWI GGATC 4 cut(s) 388, 500, 527, 934
AcsI RAATTY 2 cut(s) 900, 973
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 2 cut(s) 495, 598
AfiI CCNNNNNNNGG 4 cut(s) 247, 515, 568, 890
AflIII ACRYGT 1 cut(s) 747
AgsI TTSAA 7 cut(s) 139, 463, 475, 676, 857, 920, 961
AhlI ACTAGT 1 cut(s) 593
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 5 cut(s) 156, 334, 346, 957, 995
AluI AGCT 5 cut(s) 156, 334, 346, 957, 995
Alw21I GWGCWC 1 cut(s) 485
Alw26I GTCTC 3 cut(s) 273, 624, 912
AlwI GGATC 4 cut(s) 388, 500, 527, 934
AlwNI CAGNNNCTG 1 cut(s) 397
AoxI GGCC 4 cut(s) 8, 185, 452, 912
ApeKI GCWGC 3 cut(s) 56, 156, 1064
ApoI RAATTY 2 cut(s) 900, 973
ArsI GACNNNNNNTTYG 2 cut(s) 84, 116
AseI ATTAAT 1 cut(s) 942
Asp700I GAANNNNTTC 1 cut(s) 852
AspS9I GGNCC 2 cut(s) 452, 950
AsuHPI GGTGA 1 cut(s) 864
AvaII GGWCC 1 cut(s) 950
AxyI CCTNAGG 1 cut(s) 182
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BanII GRGCYC 1 cut(s) 737
BbsI GAAGAC 1 cut(s) 765
Bbv12I GWGCWC 1 cut(s) 485
BbvI GCAGC 3 cut(s) 68, 143, 1076
BccI CCATC 4 cut(s) 392, 463, 517, 1082
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 2 cut(s) 97, 1024
BclI TGATCA 1 cut(s) 985
BcoDI GTCTC 3 cut(s) 273, 624, 912
BcuI ACTAGT 1 cut(s) 593
BfaI CTAG 2 cut(s) 420, 594
BfmI CTRYAG 3 cut(s) 54, 157, 252
BfuAI ACCTGC 1 cut(s) 252
BfuI GTATCC 2 cut(s) 97, 1024
BisI GCNGC 3 cut(s) 57, 157, 1065
BlsI GCNGC 3 cut(s) 58, 158, 1066
BmcAI AGTACT 1 cut(s) 598
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 950
BmgT120I GGNCC 2 cut(s) 452, 950
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 2 cut(s) 55, 878
BpiI GAAGAC 1 cut(s) 765
Bpu10I CCTNAGC 1 cut(s) 164
BpuEI CTTGAG 2 cut(s) 179, 1036
BsaBI GATNNNNATC 2 cut(s) 359, 931
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 4 cut(s) 247, 515, 568, 890
Bse1I ACTGG 1 cut(s) 326
Bse21I CCTNAGG 1 cut(s) 182
Bse3DI GCAATG 3 cut(s) 639, 656, 746
Bse8I GATNNNNATC 2 cut(s) 359, 931
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 5 cut(s) 70, 455, 821, 1093, 1097
BseJI GATNNNNATC 2 cut(s) 359, 931
BseLI CCNNNNNNNGG 4 cut(s) 247, 515, 568, 890
BseMI GCAATG 3 cut(s) 639, 656, 746
BseMII CTCAG 3 cut(s) 196, 635, 923
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 1 cut(s) 702
BseXI GCAGC 3 cut(s) 68, 143, 1076
BsgI GTGCAG 1 cut(s) 738
Bsh1236I CGCG 1 cut(s) 749
BshFI GGCC 4 cut(s) 10, 187, 454, 914
BsiHKAI GWGCWC 1 cut(s) 485
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 4 cut(s) 247, 515, 568, 890
BsmAI GTCTC 3 cut(s) 273, 624, 912
BsmFI GGGAC 1 cut(s) 57
BsnI GGCC 4 cut(s) 10, 187, 454, 914
Bso31I GGTCTC 1 cut(s) 273
Bsp1286I GDGCHC 2 cut(s) 485, 737
Bsp143I GATC 7 cut(s) 393, 505, 519, 724, 829, 926, 985
BspACI CCGC 2 cut(s) 737, 825
BspANI GGCC 4 cut(s) 10, 187, 454, 914
BspCNI CTCAG 3 cut(s) 195, 634, 922
BspFNI CGCG 1 cut(s) 749
BspLI GGNNCC 1 cut(s) 120
BspMAI CTGCAG 2 cut(s) 58, 161
BspMI ACCTGC 1 cut(s) 252
BspPI GGATC 4 cut(s) 388, 500, 527, 934
BspQI GCTCTTC 2 cut(s) 146, 219
BspTNI GGTCTC 1 cut(s) 273
BsrDI GCAATG 3 cut(s) 639, 656, 746
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 7 cut(s) 393, 505, 519, 724, 829, 926, 985
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 115, 771, 889
Bst6I CTCTTC 5 cut(s) 32, 146, 213, 219, 606
BstC8I GCNNGC 4 cut(s) 82, 161, 737, 867
BstDEI CTNAG 6 cut(s) 123, 164, 182, 621, 909, 1039
BstEII GGTNACC 1 cut(s) 440
BstENI CCTNNNNNAGG 1 cut(s) 245
BstF5I GGATG 5 cut(s) 70, 455, 821, 1093, 1097
BstFNI CGCG 1 cut(s) 749
BstKTI GATC 7 cut(s) 396, 508, 522, 727, 832, 929, 988
BstMAI GTCTC 3 cut(s) 273, 624, 912
BstMBI GATC 7 cut(s) 393, 505, 519, 724, 829, 926, 985
BstMWI GCNNNNNNNGC 2 cut(s) 65, 875
BstNI CCWGG 1 cut(s) 291
BstPI GGTNACC 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 3 cut(s) 54, 157, 252
BstUI CGCG 1 cut(s) 749
BstV1I GCAGC 3 cut(s) 68, 143, 1076
BstV2I GAAGAC 1 cut(s) 765
BstX2I RGATCY 3 cut(s) 393, 505, 926
BstYI RGATCY 3 cut(s) 393, 505, 926
Bsu36I CCTNAGG 1 cut(s) 182
BsuI GTATCC 2 cut(s) 97, 1024
BsuRI GGCC 4 cut(s) 10, 187, 454, 914
BtsCI GGATG 5 cut(s) 70, 455, 821, 1093, 1097
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 4 cut(s) 82, 161, 737, 867
CaiI CAGNNNCTG 1 cut(s) 397
Cfr13I GGNCC 2 cut(s) 452, 950
CseI GACGC 1 cut(s) 738
Csp6I GTAC 2 cut(s) 494, 597
CspCI CAANNNNNGTGG 2 cut(s) 654, 689
CviAII CATG 4 cut(s) 95, 200, 478, 809
CviQI GTAC 2 cut(s) 494, 597
DdeI CTNAG 6 cut(s) 123, 164, 182, 621, 909, 1039
DpnI GATC 7 cut(s) 395, 507, 521, 726, 831, 928, 987
DpnII GATC 7 cut(s) 393, 505, 519, 724, 829, 926, 985
Eam1104I CTCTTC 5 cut(s) 32, 146, 213, 219, 606
EarI CTCTTC 5 cut(s) 32, 146, 213, 219, 606
Eco147I AGGCCT 2 cut(s) 187, 914
Eco24I GRGCYC 1 cut(s) 737
Eco31I GGTCTC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 950
Eco57I CTGAAG 1 cut(s) 237
Eco81I CCTNAGG 1 cut(s) 182
Eco91I GGTNACC 1 cut(s) 440
EcoNI CCTNNNNNAGG 1 cut(s) 245
EcoO65I GGTNACC 1 cut(s) 440
EcoRI GAATTC 1 cut(s) 900
EcoRII CCWGG 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 737
FaeI CATG 4 cut(s) 98, 203, 481, 812
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 1 cut(s) 57
FatI CATG 4 cut(s) 94, 199, 477, 808
FauI CCCGC 1 cut(s) 744
FbaI TGATCA 1 cut(s) 985
Fnu4HI GCNGC 3 cut(s) 57, 157, 1065
FokI GGATG 4 cut(s) 77, 442, 808, 1100
FriOI GRGCYC 1 cut(s) 737
Fsp4HI GCNGC 3 cut(s) 57, 157, 1065
FspBI CTAG 2 cut(s) 420, 594
GluI GCNGC 3 cut(s) 57, 157, 1065
HaeIII GGCC 4 cut(s) 10, 187, 454, 914
HgaI GACGC 1 cut(s) 738
Hin1II CATG 4 cut(s) 98, 203, 481, 812
HindIII AAGCTT 2 cut(s) 344, 955
HinfI GANTC 6 cut(s) 45, 99, 360, 500, 572, 637
HphI GGTGA 1 cut(s) 864
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 5 cut(s) 104, 273, 403, 505, 885
Hpy188III TCNNGA 4 cut(s) 49, 215, 641, 1046
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 6 cut(s) 217, 251, 434, 469, 616, 812
HpyCH4III ACNGT 3 cut(s) 115, 771, 889
HpyCH4V TGCA 4 cut(s) 56, 159, 278, 755
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 875
HpyF3I CTNAG 6 cut(s) 123, 164, 182, 621, 909, 1039
Hsp92II CATG 4 cut(s) 98, 203, 481, 812
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 7 cut(s) 393, 505, 519, 724, 829, 926, 985
LguI GCTCTTC 2 cut(s) 146, 219
Lsp1109I GCAGC 3 cut(s) 68, 143, 1076
LweI GCATC 2 cut(s) 55, 878
MaeI CTAG 2 cut(s) 420, 594
MaeIII GTNAC 6 cut(s) 370, 440, 573, 682, 743, 763
MalI GATC 7 cut(s) 395, 507, 521, 726, 831, 928, 987
MboI GATC 7 cut(s) 393, 505, 519, 724, 829, 926, 985
MflI RGATCY 3 cut(s) 393, 505, 926
MhlI GDGCHC 2 cut(s) 485, 737
MluCI AATT 5 cut(s) 106, 175, 787, 900, 973
MluI ACGCGT 1 cut(s) 747
MlyI GAGTC 3 cut(s) 39, 108, 581
MmeI TCCRAC 3 cut(s) 82, 904, 908
MroXI GAANNNNTTC 1 cut(s) 852
MseI TTAA 2 cut(s) 786, 942
MslI CAYNNNNRTG 1 cut(s) 542
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 749
MwoI GCNNNNNNNGC 2 cut(s) 65, 875
NdeII GATC 7 cut(s) 393, 505, 519, 724, 829, 926, 985
NlaIII CATG 4 cut(s) 98, 203, 481, 812
NlaIV GGNNCC 1 cut(s) 120
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 3 cut(s) 573, 743, 763
PaqCI CACCTGC 1 cut(s) 252
PceI AGGCCT 2 cut(s) 187, 914
PciSI GCTCTTC 2 cut(s) 146, 219
PdmI GAANNNNTTC 1 cut(s) 852
PfeI GAWTC 3 cut(s) 360, 500, 637
PkrI GCNGC 3 cut(s) 58, 158, 1066
PleI GAGTC 3 cut(s) 39, 107, 580
PpsI GAGTC 3 cut(s) 39, 107, 580
PshBI ATTAAT 1 cut(s) 942
Psp6I CCWGG 1 cut(s) 289
PspEI GGTNACC 1 cut(s) 440
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 2 cut(s) 452, 950
PstI CTGCAG 2 cut(s) 58, 161
PstNI CAGNNNCTG 1 cut(s) 397
PsuI RGATCY 3 cut(s) 393, 505, 926
RsaI GTAC 2 cut(s) 495, 598
RsaNI GTAC 2 cut(s) 494, 597
RseI CAYNNNNRTG 1 cut(s) 542
SapI GCTCTTC 2 cut(s) 146, 219
SaqAI TTAA 2 cut(s) 786, 942
SatI GCNGC 3 cut(s) 57, 157, 1065
Sau3AI GATC 7 cut(s) 393, 505, 519, 724, 829, 926, 985
Sau96I GGNCC 2 cut(s) 452, 950
ScaI AGTACT 1 cut(s) 598
SchI GAGTC 3 cut(s) 39, 108, 581
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 2 cut(s) 485, 737
SfaNI GCATC 2 cut(s) 55, 878
SfcI CTRYAG 3 cut(s) 54, 157, 252
SinI GGWCC 1 cut(s) 950
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 2 cut(s) 194, 1015
SmoI CTYRAG 2 cut(s) 194, 1015
SpeI ACTAGT 1 cut(s) 593
Sse9I AATT 5 cut(s) 106, 175, 787, 900, 973
SseBI AGGCCT 2 cut(s) 187, 914
SsiI CCGC 2 cut(s) 737, 825
SspMI CTAG 2 cut(s) 420, 594
StuI AGGCCT 2 cut(s) 187, 914
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 3 cut(s) 115, 771, 889
TaqI TCGA 2 cut(s) 363, 628
TasI AATT 5 cut(s) 106, 175, 787, 900, 973
TatI WGTACW 1 cut(s) 596
TfiI GAWTC 3 cut(s) 360, 500, 637
Tru1I TTAA 2 cut(s) 786, 942
Tru9I TTAA 2 cut(s) 786, 942
TseFI GTSAC 3 cut(s) 573, 743, 763
TseI GCWGC 3 cut(s) 56, 156, 1064
Tsp45I GTSAC 3 cut(s) 573, 743, 763
TspDTI ATGAA 9 cut(s) 233, 572, 645, 650, 693, 810, 921, 996, 1011
VpaK11BI GGWCC 1 cut(s) 950
VspI ATTAAT 1 cut(s) 942
XagI CCTNNNNNAGG 1 cut(s) 245
XapI RAATTY 2 cut(s) 900, 973
XmnI GAANNNNTTC 1 cut(s) 852
XspI CTAG 2 cut(s) 420, 594
ZrmI AGTACT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.