Rw3G000040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0017316
Physical Location & Seq
Forward (+)
76424 .. 93785
17362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G000040.1

Sequence Viewer

Length: 1389 bp
ATGAAGAATACAAGCAGTAGGAGAGTCCCTGGGATGCCATTGACTAATAATGGACGGATCAAACAGGAGACAGATCATCCTGATCGGGAAGATCTTATTCTCTTCCGGGAATTGCACAAGCGCGAAAAAGAACGCAATATTGTCACCCTCCTCCAGCCTGTTTCTGAAGAGTTTGAGCCAAATGGTATACCCGCGACGTGCTTTCATTTTCATATATTACATATATATATATATATATATATATATATATATTATGTGCTTGCTTCTGCCGGCCTCCCTTTGATTAATTGCCTGGAATATCAATTCAACTATACACCTTGCCTCCAATATACAGGAAACTATCAGCTCTACAGAATTGCATCTGCCAAGAAGGGATCTGGATTTGAATTTCTTGCTGAAAACGAGAAGAATGATTATGATTGGTTAAAAACACCGCCGGCAACTCCTCTTTTTCCCTCTTTAGAAATGGACGCAAATAGCCCTGAATTCATTATTCAACGGGAAATACCAATTCTCCAACCTCTTTCACGGTTTGCAGCTGCCAATTGCAAGTCAGAGGCGGTAGATGAGCAGAGGAATGGGAGACCAAAATCTGGAAACCCAAAATCAAAACTCCCCCTGAGGTCCGTCACGCCGAGTGCTCAAAGACGGAGCACATTAATATCGAATTCAACAAATCAAACAAAAATTACCAAAGTTGCTGCAGTAACTAGAACAGATGTACCAATTTTGAACCAGCAGAAAGTAATCAAATCGACCGCTGATCATAATGACATGATCATCACACGGAAAACAAAGCCTACAACGACAAGTAGAAGTGGTGTTGTGTCCCCACTTCCTCTTGTGAGATCAGCAAAGAATATTCCAGCTGGCTTTTCTAATGAGAAACCGCCTAATCTGAGGACAGAGCAACGCTCAATATCCGCTACACGGGATCGATCAGCTCGGGCCAAATCAGCTGCAGCACCTGTAAGTACTCACCTGCAGAGATCAGCATACACAGCTGAACCAAGGAGGCCACAATCATGCTCATCAATAGCAAGCATCTCTAGGGATCGGAAAGTAATCAGTAGTAATGTTGAAGGGAGCGTGCAGCTGGATATCAAGTACTGTACTGTCAGTGAAGGCGATTTGATCAATACCAGTAGTCCAAACGGAATAAGAAGTAATCAAACAGGAAACGGGGGGCAAATTTTGGGGAGTAGGATGGTCCAGAGAGTCATGAGTGCAAGATCAAAGGCAGCTACTCTTGAAGAGAAAAATAAGAGACCAAATTCTCGGTTTCCGCTTAATGAAACCTCTGGATTTGGTAGAATGATTCCCAAGAATTCAATGGATACAACTCTCAAGCATATGGTGGCGCCAAAGATAAAACGGGATGGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 map00562
Pfam Domains
Protein Families
No domains found.

Protein Analysis

462

Amino Acids

51.63

Weight (kDa)

9.9

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017316)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00040
prunus_persica Prupe.6G365700_v2.0.a1
pyrus_communis pycom12g24270
rosa_laevigata RLG00000026006
rosa_multiflora Rmu_ssc0000473.1_g000006
rosa_roxburghii Rroxscaffold_6G00425540
rosa_rugosa Rorug02G0600400 Rorug02G0600500
rosa_samantha Rh3AG000600 Rh3BG000400 Rh3CG000400 Rh3DG000600
rosa_wichuraiana Rw3G000040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 990
Acc36I ACCTGC 1 cut(s) 990
AccB1I GGYRCC 1 cut(s) 1360
AccB7I CCANNNNNTGG 1 cut(s) 593
AccI GTMKAC 1 cut(s) 187
AccII CGCG 2 cut(s) 123, 194
AciI CCGC 7 cut(s) 192, 434, 560, 759, 890, 924, 1286
AclWI GGATC 4 cut(s) 65, 382, 942, 1062
AcsI RAATTY 6 cut(s) 386, 485, 667, 1191, 1273, 1327
AcuI CTGAAG 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 1361
AfaI GTAC 4 cut(s) 723, 976, 1109, 1114
AfiI CCNNNNNNNGG 2 cut(s) 593, 930
AgsI TTSAA 8 cut(s) 307, 386, 497, 672, 733, 1082, 1253, 1332
AjiI CACGTC 1 cut(s) 198
AjnI CCWGG 2 cut(s) 28, 291
AluBI AGCT 8 cut(s) 346, 539, 869, 944, 959, 1004, 1096, 1244
AluI AGCT 8 cut(s) 346, 539, 869, 944, 959, 1004, 1096, 1244
Alw21I GWGCWC 2 cut(s) 643, 656
Alw26I GTCTC 3 cut(s) 62, 577, 1261
AlwI GGATC 4 cut(s) 65, 382, 942, 1062
AlwNI CAGNNNCTG 1 cut(s) 968
Ama87I CYCGRG 1 cut(s) 945
AoxI GGCC 3 cut(s) 271, 948, 1016
ApeKI GCWGC 7 cut(s) 536, 539, 701, 959, 962, 1093, 1241
ApoI RAATTY 6 cut(s) 386, 485, 667, 1191, 1273, 1327
AseI ATTAAT 2 cut(s) 285, 659
AspLEI GCGC 2 cut(s) 123, 1363
AspS9I GGNCC 3 cut(s) 624, 948, 1210
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 2 cut(s) 136, 971
AvaI CYCGRG 1 cut(s) 945
AvaII GGWCC 2 cut(s) 624, 1210
AxyI CCTNAGG 1 cut(s) 620
BaeI ACNNNNGTAYC 2 cut(s) 705, 738
BanI GGYRCC 1 cut(s) 1360
Bbv12I GWGCWC 2 cut(s) 643, 656
BbvI GCAGC 7 cut(s) 526, 548, 688, 946, 974, 1105, 1253
BccI CCATC 2 cut(s) 1201, 1373
BciT130I CCWGG 2 cut(s) 30, 293
BciVI GTATCC 1 cut(s) 1330
BclI TGATCA 3 cut(s) 763, 777, 1134
BcnI CCSGG 1 cut(s) 107
BcoDI GTCTC 3 cut(s) 62, 577, 1261
BfaI CTAG 2 cut(s) 711, 1050
BfmI CTRYAG 4 cut(s) 349, 702, 960, 983
BfoI RGCGCY 1 cut(s) 1364
BfuAI ACCTGC 1 cut(s) 990
BfuI GTATCC 1 cut(s) 1330
BglII AGATCT 1 cut(s) 91
BisI GCNGC 7 cut(s) 537, 540, 702, 960, 963, 1094, 1242
BlsI GCNGC 7 cut(s) 538, 541, 703, 961, 964, 1095, 1243
BmcAI AGTACT 2 cut(s) 976, 1109
Bme1390I CCNGG 3 cut(s) 30, 107, 293
Bme18I GGWCC 2 cut(s) 624, 1210
BmeT110I CYCGRG 1 cut(s) 945
BmgBI CACGTC 1 cut(s) 198
BmgT120I GGNCC 3 cut(s) 624, 948, 1210
BmiI GGNNCC 1 cut(s) 1362
BmrFI CCNGG 3 cut(s) 30, 107, 293
BmsI GCATC 3 cut(s) 24, 368, 1053
BplI GAGNNNNNCTC 2 cut(s) 899, 931
BpmI CTGGAG 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 1331
BpuMI CCSGG 1 cut(s) 107
Bsa29I ATCGAT 1 cut(s) 937
BsaHI GRCGYC 1 cut(s) 1361
BsaI GGTCTC 2 cut(s) 577, 1261
BsaJI CCNNGG 3 cut(s) 28, 29, 1010
BsaXI ACNNNNNCTCC 4 cut(s) 306, 336, 498, 528
Bsc4I CCNNNNNNNGG 2 cut(s) 593, 930
Bse118I RCCGGY 2 cut(s) 269, 436
Bse1I ACTGG 1 cut(s) 1143
Bse21I CCTNAGG 1 cut(s) 620
BseBI CCWGG 2 cut(s) 30, 293
BseCI ATCGAT 1 cut(s) 937
BseDI CCNNGG 3 cut(s) 28, 29, 1010
BseGI GGATG 4 cut(s) 39, 76, 1212, 1384
BseLI CCNNNNNNNGG 2 cut(s) 593, 930
BseMII CTCAG 2 cut(s) 611, 890
BseNI ACTGG 1 cut(s) 1143
BseRI GAGGAG 2 cut(s) 140, 435
BseXI GCAGC 7 cut(s) 526, 548, 688, 946, 974, 1105, 1253
BsgI GTGCAG 1 cut(s) 1112
Bsh1236I CGCG 2 cut(s) 123, 194
Bsh1285I CGRYCG 1 cut(s) 759
BshFI GGCC 3 cut(s) 273, 950, 1018
BshNI GGYRCC 1 cut(s) 1360
BshVI ATCGAT 1 cut(s) 937
BsiEI CGRYCG 1 cut(s) 759
BsiHKAI GWGCWC 2 cut(s) 643, 656
BsiHKCI CYCGRG 1 cut(s) 945
BsiSI CCGG 3 cut(s) 106, 270, 437
BslFI GGGAC 2 cut(s) 11, 814
BslI CCNNNNNNNGG 2 cut(s) 593, 930
BsmAI GTCTC 3 cut(s) 62, 577, 1261
BsmFI GGGAC 2 cut(s) 11, 814
BsnI GGCC 3 cut(s) 273, 950, 1018
Bso31I GGTCTC 2 cut(s) 577, 1261
BsoBI CYCGRG 1 cut(s) 945
Bsp1286I GDGCHC 2 cut(s) 643, 656
BspACI CCGC 7 cut(s) 192, 434, 560, 759, 890, 924, 1286
BspANI GGCC 3 cut(s) 273, 950, 1018
BspCNI CTCAG 2 cut(s) 612, 891
BspDI ATCGAT 1 cut(s) 937
BspFNI CGCG 2 cut(s) 123, 194
BspHI TCATGA 1 cut(s) 1221
BspLI GGNNCC 1 cut(s) 1362
BspMAI CTGCAG 3 cut(s) 706, 964, 987
BspMI ACCTGC 1 cut(s) 990
BspPI GGATC 4 cut(s) 65, 382, 942, 1062
BspT107I GGYRCC 1 cut(s) 1360
BspTNI GGTCTC 2 cut(s) 577, 1261
BsrFI RCCGGY 2 cut(s) 269, 436
BsrI ACTGG 1 cut(s) 1143
BssAI RCCGGY 2 cut(s) 269, 436
BssECI CCNNGG 3 cut(s) 28, 29, 1010
BssNAI GTATAC 1 cut(s) 188
BssNI GRCGYC 1 cut(s) 1361
BssT1I CCWWGG 1 cut(s) 1010
Bst1107I GTATAC 1 cut(s) 188
Bst2UI CCWGG 2 cut(s) 30, 293
Bst4CI ACNGT 3 cut(s) 531, 1112, 1117
Bst6I CTCTTC 3 cut(s) 107, 162, 1248
BstACI GRCGYC 1 cut(s) 1361
BstC8I GCNNGC 6 cut(s) 261, 271, 438, 871, 1042, 1091
BstDEI CTNAG 2 cut(s) 620, 899
BstF5I GGATG 4 cut(s) 39, 76, 1212, 1384
BstFNI CGCG 2 cut(s) 123, 194
BstH2I RGCGCY 1 cut(s) 1364
BstHHI GCGC 2 cut(s) 123, 1363
BstMAI GTCTC 3 cut(s) 62, 577, 1261
BstMCI CGRYCG 1 cut(s) 759
BstMWI GCNNNNNNNGC 2 cut(s) 956, 1001
BstNI CCWGG 2 cut(s) 30, 293
BstSCI CCNGG 3 cut(s) 28, 105, 291
BstSFI CTRYAG 4 cut(s) 349, 702, 960, 983
BstUI CGCG 2 cut(s) 123, 194
BstV1I GCAGC 7 cut(s) 526, 548, 688, 946, 974, 1105, 1253
BstX2I RGATCY 2 cut(s) 91, 374
BstYI RGATCY 2 cut(s) 91, 374
BstZ17I GTATAC 1 cut(s) 188
Bsu15I ATCGAT 1 cut(s) 937
Bsu36I CCTNAGG 1 cut(s) 620
BsuI GTATCC 1 cut(s) 1330
BsuRI GGCC 3 cut(s) 273, 950, 1018
BsuTUI ATCGAT 1 cut(s) 937
BtrI CACGTC 1 cut(s) 198
BtsCI GGATG 4 cut(s) 39, 76, 1212, 1384
BtsIMutI CAGTG 1 cut(s) 1126
BveI ACCTGC 1 cut(s) 990
Cac8I GCNNGC 6 cut(s) 261, 271, 438, 871, 1042, 1091
CaiI CAGNNNCTG 1 cut(s) 968
CciI TCATGA 1 cut(s) 1221
CfoI GCGC 2 cut(s) 123, 1363
Cfr10I RCCGGY 2 cut(s) 269, 436
Cfr13I GGNCC 3 cut(s) 624, 948, 1210
ClaI ATCGAT 1 cut(s) 937
CseI GACGC 1 cut(s) 479
Csp6I GTAC 4 cut(s) 722, 975, 1108, 1113
CviAII CATG 3 cut(s) 775, 1026, 1222
CviQI GTAC 4 cut(s) 722, 975, 1108, 1113
DdeI CTNAG 2 cut(s) 620, 899
DinI GGCGCC 1 cut(s) 1362
Eam1104I CTCTTC 3 cut(s) 107, 162, 1248
EarI CTCTTC 3 cut(s) 107, 162, 1248
Eco130I CCWWGG 1 cut(s) 1010
Eco31I GGTCTC 2 cut(s) 577, 1261
Eco32I GATATC 1 cut(s) 1102
Eco47I GGWCC 2 cut(s) 624, 1210
Eco57I CTGAAG 1 cut(s) 186
Eco81I CCTNAGG 1 cut(s) 620
Eco88I CYCGRG 1 cut(s) 945
EcoRI GAATTC 3 cut(s) 485, 667, 1327
EcoRII CCWGG 2 cut(s) 28, 291
EcoRV GATATC 1 cut(s) 1102
EcoT14I CCWWGG 1 cut(s) 1010
EgeI GGCGCC 1 cut(s) 1362
EheI GGCGCC 1 cut(s) 1362
ErhI CCWWGG 1 cut(s) 1010
FaeI CATG 3 cut(s) 778, 1029, 1225
FaqI GGGAC 2 cut(s) 11, 814
FatI CATG 3 cut(s) 774, 1025, 1221
FauI CCCGC 1 cut(s) 199
FauNDI CATATG 1 cut(s) 1353
FbaI TGATCA 3 cut(s) 763, 777, 1134
FblI GTMKAC 1 cut(s) 187
Fnu4HI GCNGC 7 cut(s) 537, 540, 702, 960, 963, 1094, 1242
FokI GGATG 3 cut(s) 46, 63, 1219
Fsp4HI GCNGC 7 cut(s) 537, 540, 702, 960, 963, 1094, 1242
FspBI CTAG 2 cut(s) 711, 1050
GlaI GCGC 2 cut(s) 122, 1362
GluI GCNGC 7 cut(s) 537, 540, 702, 960, 963, 1094, 1242
GsuI CTGGAG 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 1364
HaeIII GGCC 3 cut(s) 273, 950, 1018
HapII CCGG 3 cut(s) 106, 270, 437
HgaI GACGC 1 cut(s) 479
HhaI GCGC 2 cut(s) 123, 1363
Hin1I GRCGYC 1 cut(s) 1361
Hin1II CATG 3 cut(s) 778, 1029, 1225
Hin6I GCGC 2 cut(s) 121, 1361
HinP1I GCGC 2 cut(s) 121, 1361
HinfI GANTC 3 cut(s) 24, 1218, 1318
HpaII CCGG 3 cut(s) 106, 270, 437
HphI GGTGA 2 cut(s) 136, 971
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 4 cut(s) 166, 556, 900, 1059
Hpy188III TCNNGA 8 cut(s) 80, 86, 378, 594, 1213, 1222, 1250, 1302
Hpy8I GTNNAC 1 cut(s) 188
Hpy99I CGWCG 1 cut(s) 199
HpyAV CCTTC 3 cut(s) 364, 1076, 1118
HpyCH4III ACNGT 3 cut(s) 531, 1112, 1117
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 9 cut(s) 115, 359, 536, 549, 704, 962, 985, 1093, 1229
HpyF10VI GCNNNNNNNGC 2 cut(s) 956, 1001
HpyF3I CTNAG 2 cut(s) 620, 899
HpySE526I ACGT 1 cut(s) 197
Hsp92I GRCGYC 1 cut(s) 1361
Hsp92II CATG 3 cut(s) 778, 1029, 1225
HspAI GCGC 2 cut(s) 121, 1361
KasI GGCGCC 1 cut(s) 1360
KroI GCCGGC 2 cut(s) 269, 436
KroNI GCCGGC 2 cut(s) 271, 438
Ksp22I TGATCA 3 cut(s) 763, 777, 1134
LmnI GCTCC 2 cut(s) 651, 1086
Lsp1109I GCAGC 7 cut(s) 526, 548, 688, 946, 974, 1105, 1253
LweI GCATC 3 cut(s) 24, 368, 1053
MaeI CTAG 2 cut(s) 711, 1050
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 3 cut(s) 142, 628, 706
MboII GAAGA 6 cut(s) 16, 94, 101, 179, 418, 1265
MfeI CAATTG 1 cut(s) 544
MflI RGATCY 2 cut(s) 91, 374
MhlI GDGCHC 2 cut(s) 643, 656
Mly113I GGCGCC 1 cut(s) 1361
MlyI GAGTC 2 cut(s) 33, 1227
MmeI TCCRAC 1 cut(s) 541
MroNI GCCGGC 2 cut(s) 269, 436
MseI TTAA 4 cut(s) 285, 425, 659, 1290
MslI CAYNNNNRTG 1 cut(s) 1024
MspA1I CMGCKG 6 cut(s) 539, 761, 869, 959, 1004, 1096
MspI CCGG 3 cut(s) 106, 270, 437
MspR9I CCNGG 3 cut(s) 30, 107, 293
MunI CAATTG 1 cut(s) 544
MvaI CCWGG 2 cut(s) 30, 293
MvnI CGCG 2 cut(s) 123, 194
MwoI GCNNNNNNNGC 2 cut(s) 956, 1001
NaeI GCCGGC 2 cut(s) 271, 438
NarI GGCGCC 1 cut(s) 1361
NciI CCSGG 1 cut(s) 107
NdeI CATATG 1 cut(s) 1353
NgoMIV GCCGGC 2 cut(s) 269, 436
NlaIII CATG 3 cut(s) 778, 1029, 1225
NlaIV GGNNCC 1 cut(s) 1362
NmeAIII GCCGAG 1 cut(s) 660
NmuCI GTSAC 2 cut(s) 142, 628
PagI TCATGA 1 cut(s) 1221
PaqCI CACCTGC 1 cut(s) 990
PasI CCCWGGG 1 cut(s) 29
PdiI GCCGGC 2 cut(s) 271, 438
PfeI GAWTC 1 cut(s) 1318
PflMI CCANNNNNTGG 1 cut(s) 593
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 7 cut(s) 538, 541, 703, 961, 964, 1095, 1243
PleI GAGTC 2 cut(s) 32, 1226
PluTI GGCGCC 1 cut(s) 1364
PpsI GAGTC 2 cut(s) 32, 1226
PshBI ATTAAT 2 cut(s) 285, 659
Psp6I CCWGG 2 cut(s) 28, 291
PspGI CCWGG 2 cut(s) 28, 291
PspN4I GGNNCC 1 cut(s) 1362
PspPI GGNCC 3 cut(s) 624, 948, 1210
PstI CTGCAG 3 cut(s) 706, 964, 987
PstNI CAGNNNCTG 1 cut(s) 968
PsuI RGATCY 2 cut(s) 91, 374
PvuII CAGCTG 5 cut(s) 539, 869, 959, 1004, 1096
RsaI GTAC 4 cut(s) 723, 976, 1109, 1114
RsaNI GTAC 4 cut(s) 722, 975, 1108, 1113
RseI CAYNNNNRTG 1 cut(s) 1024
SaqAI TTAA 4 cut(s) 285, 425, 659, 1290
SatI GCNGC 7 cut(s) 537, 540, 702, 960, 963, 1094, 1242
Sau96I GGNCC 3 cut(s) 624, 948, 1210
ScaI AGTACT 2 cut(s) 976, 1109
SchI GAGTC 2 cut(s) 33, 1227
ScrFI CCNGG 3 cut(s) 30, 107, 293
SduI GDGCHC 2 cut(s) 643, 656
SfaNI GCATC 3 cut(s) 24, 368, 1053
SfcI CTRYAG 4 cut(s) 349, 702, 960, 983
SfoI GGCGCC 1 cut(s) 1362
SinI GGWCC 2 cut(s) 624, 1210
SmiMI CAYNNNNRTG 1 cut(s) 1024
SmlI CTYRAG 1 cut(s) 1346
SmoI CTYRAG 1 cut(s) 1346
SsiI CCGC 7 cut(s) 192, 434, 560, 759, 890, 924, 1286
SspDI GGCGCC 1 cut(s) 1360
SspI AATATT 2 cut(s) 139, 862
SspMI CTAG 2 cut(s) 711, 1050
StyD4I CCNGG 3 cut(s) 28, 105, 291
StyI CCWWGG 1 cut(s) 1010
TaaI ACNGT 3 cut(s) 531, 1112, 1117
TaiI ACGT 1 cut(s) 200
TaqI TCGA 3 cut(s) 665, 755, 937
TatI WGTACW 3 cut(s) 974, 1107, 1112
TfiI GAWTC 1 cut(s) 1318
Tru1I TTAA 4 cut(s) 285, 425, 659, 1290
Tru9I TTAA 4 cut(s) 285, 425, 659, 1290
TscAI CASTG 1 cut(s) 1126
TseFI GTSAC 2 cut(s) 142, 628
TseI GCWGC 7 cut(s) 536, 539, 701, 959, 962, 1093, 1241
Tsp45I GTSAC 2 cut(s) 142, 628
TspDTI ATGAA 5 cut(s) 17, 194, 200, 478, 1308
TspGWI ACGGA 5 cut(s) 70, 616, 664, 802, 1170
TspRI CASTG 1 cut(s) 1126
Van91I CCANNNNNTGG 1 cut(s) 593
VpaK11BI GGWCC 2 cut(s) 624, 1210
VspI ATTAAT 2 cut(s) 285, 659
XapI RAATTY 6 cut(s) 386, 485, 667, 1191, 1273, 1327
XcmI CCANNNNNNNNNTGG 1 cut(s) 1330
XmiI GTMKAC 1 cut(s) 187
XspI CTAG 2 cut(s) 711, 1050
ZrmI AGTACT 2 cut(s) 976, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.