Prupe.6G365700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017316
Physical Location & Seq
Reverse (-)
30691441 .. 30697819
6379 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G365700.1

Sequence Viewer

Length: 1338 bp
ATGTCTATGATGAACACTATTATTAATGGTGATGGTGGTGGTGGTGGTGGTGGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTACAAGTGCAAGGGGTACTGTTAGCAAGAGAGTCCCCGGGATGCCATTGATCAGTGGACGGAACAAGGACAGAGATCATGAAGATCTTATTCTATTCCAGGAGTTGCACAAACGCCAAAAAGAACGAAATATTCTCAGCCTCCTCCAACCTGTTTCTGATGAGTTTGAGCCCACTGGAAATTATCAGCTCTACAGAACTGCAGCTGCCCAGAAAGGATCCGGATTTGAATTTCTTGCTGAAAACGACAAGAACGATTATGATTGGTTGAAAACACCGCCCGTCACTCCTCTTTTTCCATCTCTAGAAATGGAAACAAATGGCCCTGAACTCGTCATTCAAAGGGAAATACCAATCCTCCACCCTCTTTCACGGTTTGCAGGTGGCAATTGCAACTCAGAGGCAGTTGAGAGAAGAAATGGCCATGGGAGGCCAAAACAGAAAATCCCTGTCATGATCCCGAGCCAAAGACGAAGTAGCAGCAGCAGCACAGTATCATCGAACGTTAACGCCCAAACAAAAAACAGTAGCAAAGCAAGAGCAAGAGCGGTACCAGCAGTAGTTAATCATCATCTCAACCAGAAAGCAGCCGTTGAGTCTGACGGTGACCTCACAAGATTAAAAAGGTCAGCAAATAATAATAATATGGTCAATGAAAGTTATAAGGCCAATAATATCGACCAAAAAGATGGAAGCCGTAGTAGTATTAGTGGTGCAGATTTTGTTTCGTCGAGCAGGCCCATGGAGGAAGGAGTGAAAATGGTATATTCAAAAGCAAAGCCAACAACAGCTAGTAGCACAAGCACTAGAAGAGGTGGAGTCTCCATTGTGTCATCGTCGACTCAAATTGCGGCTGGCTTTTGTGACGAAAAACCTCCTCCTAATCTGAGGACAGAACAACGCTCAACATCTGCTAGCACCACACGGGGACGGGGTCGAGCCAGCGCGTCGACGCACCAGATACAGAAAGCAGCTGATCATCATCAACCTGCCGCAAAACTATTACCAAGGAGGCAATCATGCTCACCAAGCGTCTCCAGGGGTCGGAAAGTAGTGGAGGTGCAGGAGGAGGCTACTACTGCTAGTCTAAAAGGAAGAATTCAATTTCAAACAGGAAATGGAACGCAAGTTTTGGGAAGTAGAATGGTGCAGAGAGTGATGAATGCTAGAAAATCAGTTACTCGTGAATGTCATCATGAAGAAAAAGATCATAAAAAACCCAATTCACGGTTTCCCATGCATTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 map00562
Pfam Domains
Protein Families
No domains found.

Protein Analysis

446

Amino Acids

48.18

Weight (kDa)

10.1

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017316)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00040
prunus_persica Prupe.6G365700_v2.0.a1
pyrus_communis pycom12g24270
rosa_laevigata RLG00000026006
rosa_multiflora Rmu_ssc0000473.1_g000006
rosa_roxburghii Rroxscaffold_6G00425540
rosa_rugosa Rorug02G0600400 Rorug02G0600500
rosa_samantha Rh3AG000600 Rh3BG000400 Rh3CG000400 Rh3DG000600
rosa_wichuraiana Rw3G000040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 753
AarI CACCTGC 1 cut(s) 461
Acc36I ACCTGC 2 cut(s) 461, 1087
Acc65I GGTACC 1 cut(s) 640
AccB1I GGYRCC 1 cut(s) 640
AccBSI CCGCTC 1 cut(s) 638
AccI GTMKAC 2 cut(s) 929, 1040
AccII CGCG 1 cut(s) 1037
AccIII TCCGGA 1 cut(s) 311
AciI CCGC 4 cut(s) 368, 638, 941, 1083
AclI AACGTT 1 cut(s) 594
AclWI GGATC 3 cut(s) 303, 316, 541
AcoI YGGCCR 1 cut(s) 511
AcsI RAATTY 2 cut(s) 320, 1188
AfaI GTAC 2 cut(s) 109, 642
AfiI CCNNNNNNNGG 2 cut(s) 1134, 1317
AgsI TTSAA 6 cut(s) 320, 361, 431, 861, 1193, 1199
AjnI CCWGG 2 cut(s) 189, 1127
AluBI AGCT 4 cut(s) 280, 296, 881, 1064
AluI AGCT 4 cut(s) 280, 296, 881, 1064
Alw26I GTCTC 2 cut(s) 916, 1129
AlwI GGATC 3 cut(s) 303, 316, 541
Ama87I CYCGRG 2 cut(s) 128, 550
Aor13HI TCCGGA 1 cut(s) 311
AoxI GGCC 5 cut(s) 412, 511, 521, 756, 827
ApoI RAATTY 2 cut(s) 320, 1188
AseI ATTAAT 1 cut(s) 24
Asp718I GGTACC 1 cut(s) 640
AspLEI GCGC 1 cut(s) 1037
AspS9I GGNCC 2 cut(s) 413, 828
AsuC2I CCSGG 2 cut(s) 129, 130
AsuHPI GGTGA 3 cut(s) 41, 707, 1107
AsuNHI GCTAGC 1 cut(s) 1004
AvaI CYCGRG 2 cut(s) 128, 550
BalI TGGCCA 1 cut(s) 513
BamHI GGATCC 1 cut(s) 308
BanI GGYRCC 1 cut(s) 640
BanII GRGCYC 1 cut(s) 264
BauI CACGAG 1 cut(s) 1272
BccI CCATC 3 cut(s) 26, 397, 773
BceAI ACGGC 2 cut(s) 665, 771
BciT130I CCWGG 2 cut(s) 191, 1129
BclI TGATCA 2 cut(s) 141, 1066
BcnI CCSGG 2 cut(s) 129, 130
BcoDI GTCTC 2 cut(s) 916, 1129
BfaI CTAG 6 cut(s) 395, 882, 897, 1005, 1173, 1257
BfmI CTRYAG 2 cut(s) 283, 291
BfuAI ACCTGC 2 cut(s) 461, 1087
BglII AGATCT 1 cut(s) 175
Bme1390I CCNGG 4 cut(s) 129, 130, 191, 1129
BmeT110I CYCGRG 2 cut(s) 128, 550
BmgT120I GGNCC 2 cut(s) 413, 828
BmiI GGNNCC 2 cut(s) 310, 642
BmrFI CCNGG 4 cut(s) 129, 130, 191, 1129
BmsI GCATC 1 cut(s) 123
BmtI GCTAGC 1 cut(s) 1008
BpmI CTGGAG 1 cut(s) 1111
BpuMI CCSGG 2 cut(s) 129, 130
BsaBI GATNNNNATC 1 cut(s) 1071
BsaJI CCNNGG 6 cut(s) 127, 128, 514, 831, 1097, 1128
BsaWI WCCGGW 1 cut(s) 311
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 2 cut(s) 1134, 1317
Bse1I ACTGG 1 cut(s) 271
Bse8I GATNNNNATC 1 cut(s) 1071
BseAI TCCGGA 1 cut(s) 311
BseBI CCWGG 2 cut(s) 191, 1129
BseDI CCNNGG 6 cut(s) 127, 128, 514, 831, 1097, 1128
BseGI GGATG 1 cut(s) 138
BseJI GATNNNNATC 1 cut(s) 1071
BseLI CCNNNNNNNGG 2 cut(s) 1134, 1317
BseMII CTCAG 3 cut(s) 241, 501, 968
BseNI ACTGG 1 cut(s) 271
BseRI GAGGAG 4 cut(s) 224, 369, 957, 1172
BsgI GTGCAG 3 cut(s) 825, 1172, 1259
Bsh1236I CGCG 1 cut(s) 1037
BshFI GGCC 5 cut(s) 414, 513, 523, 758, 829
BshNI GGYRCC 1 cut(s) 640
BsiHKCI CYCGRG 2 cut(s) 128, 550
BsiSI CCGG 2 cut(s) 129, 312
BslFI GGGAC 2 cut(s) 110, 1032
BslI CCNNNNNNNGG 2 cut(s) 1134, 1317
BsmAI GTCTC 2 cut(s) 916, 1129
BsmBI CGTCTC 1 cut(s) 1129
BsmFI GGGAC 2 cut(s) 110, 1032
BsmI GAATGC 2 cut(s) 1258, 1330
BsnI GGCC 5 cut(s) 414, 513, 523, 758, 829
BsoBI CYCGRG 2 cut(s) 128, 550
Bsp1286I GDGCHC 1 cut(s) 264
Bsp13I TCCGGA 1 cut(s) 311
Bsp143I GATC 7 cut(s) 141, 166, 175, 308, 546, 1066, 1297
Bsp19I CCATGG 2 cut(s) 514, 831
BspACI CCGC 4 cut(s) 368, 638, 941, 1083
BspANI GGCC 5 cut(s) 414, 513, 523, 758, 829
BspCNI CTCAG 3 cut(s) 240, 500, 969
BspEI TCCGGA 1 cut(s) 311
BspFNI CGCG 1 cut(s) 1037
BspHI TCATGA 3 cut(s) 169, 543, 1285
BspLI GGNNCC 2 cut(s) 310, 642
BspMAI CTGCAG 1 cut(s) 295
BspMI ACCTGC 2 cut(s) 461, 1087
BspOI GCTAGC 1 cut(s) 1008
BspPI GGATC 3 cut(s) 303, 316, 541
BspT107I GGYRCC 1 cut(s) 640
BsrBI CCGCTC 1 cut(s) 638
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 6 cut(s) 127, 128, 514, 831, 1097, 1128
BssMI GATC 7 cut(s) 141, 166, 175, 308, 546, 1066, 1297
BssSI CACGAG 1 cut(s) 1272
BssT1I CCWWGG 3 cut(s) 514, 831, 1097
Bst2BI CACGAG 1 cut(s) 1272
Bst2UI CCWGG 2 cut(s) 191, 1129
Bst4CI ACNGT 6 cut(s) 112, 465, 583, 617, 695, 1320
Bst6I CTCTTC 1 cut(s) 895
BstC8I GCNNGC 4 cut(s) 827, 946, 1006, 1033
BstDEI CTNAG 3 cut(s) 227, 487, 977
BstDSI CCRYGG 2 cut(s) 514, 831
BstEII GGTNACC 1 cut(s) 695
BstF5I GGATG 1 cut(s) 138
BstFNI CGCG 1 cut(s) 1037
BstHHI GCGC 1 cut(s) 1037
BstKTI GATC 7 cut(s) 144, 169, 178, 311, 549, 1069, 1300
BstMAI GTCTC 2 cut(s) 916, 1129
BstMBI GATC 7 cut(s) 141, 166, 175, 308, 546, 1066, 1297
BstNI CCWGG 2 cut(s) 191, 1129
BstPI GGTNACC 1 cut(s) 695
BstSCI CCNGG 4 cut(s) 127, 128, 189, 1127
BstSFI CTRYAG 2 cut(s) 283, 291
BstUI CGCG 1 cut(s) 1037
BstX2I RGATCY 2 cut(s) 175, 308
BstXI CCANNNNNNTGG 1 cut(s) 779
BstYI RGATCY 2 cut(s) 175, 308
BsuRI GGCC 5 cut(s) 414, 513, 523, 758, 829
BtgI CCRYGG 2 cut(s) 514, 831
BtsCI GGATG 1 cut(s) 138
BtsIMutI CAGTG 2 cut(s) 151, 264
BveI ACCTGC 2 cut(s) 461, 1087
Cac8I GCNNGC 4 cut(s) 827, 946, 1006, 1033
CciI TCATGA 3 cut(s) 169, 543, 1285
CfoI GCGC 1 cut(s) 1037
Cfr13I GGNCC 2 cut(s) 413, 828
Cfr9I CCCGGG 1 cut(s) 128
CseI GACGC 3 cut(s) 1026, 1051, 1111
Csp6I GTAC 2 cut(s) 108, 641
CviAII CATG 7 cut(s) 170, 515, 544, 832, 1110, 1286, 1327
CviQI GTAC 2 cut(s) 108, 641
DdeI CTNAG 3 cut(s) 227, 487, 977
DpnI GATC 7 cut(s) 143, 168, 177, 310, 548, 1068, 1299
DpnII GATC 7 cut(s) 141, 166, 175, 308, 546, 1066, 1297
EaeI YGGCCR 1 cut(s) 511
Eam1104I CTCTTC 1 cut(s) 895
EarI CTCTTC 1 cut(s) 895
Eco130I CCWWGG 3 cut(s) 514, 831, 1097
Eco24I GRGCYC 1 cut(s) 264
Eco88I CYCGRG 2 cut(s) 128, 550
Eco91I GGTNACC 1 cut(s) 695
EcoO65I GGTNACC 1 cut(s) 695
EcoRI GAATTC 1 cut(s) 1188
EcoRII CCWGG 2 cut(s) 189, 1127
EcoT14I CCWWGG 3 cut(s) 514, 831, 1097
EcoT22I ATGCAT 1 cut(s) 1332
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 3 cut(s) 514, 831, 1097
Esp3I CGTCTC 1 cut(s) 1129
FaeI CATG 7 cut(s) 173, 518, 547, 835, 1113, 1289, 1330
FaqI GGGAC 2 cut(s) 110, 1032
FatI CATG 7 cut(s) 169, 514, 543, 831, 1109, 1285, 1326
FbaI TGATCA 2 cut(s) 141, 1066
FblI GTMKAC 2 cut(s) 929, 1040
FokI GGATG 1 cut(s) 145
FriOI GRGCYC 1 cut(s) 264
FspBI CTAG 6 cut(s) 395, 882, 897, 1005, 1173, 1257
GlaI GCGC 1 cut(s) 1036
GsuI CTGGAG 1 cut(s) 1111
HaeIII GGCC 5 cut(s) 414, 513, 523, 758, 829
HapII CCGG 2 cut(s) 129, 312
HgaI GACGC 3 cut(s) 1026, 1051, 1111
HhaI GCGC 1 cut(s) 1037
Hin1II CATG 7 cut(s) 173, 518, 547, 835, 1113, 1289, 1330
Hin6I GCGC 1 cut(s) 1035
HinP1I GCGC 1 cut(s) 1035
HincII GTYRAC 3 cut(s) 598, 930, 1041
HindII GTYRAC 3 cut(s) 598, 930, 1041
HinfI GANTC 4 cut(s) 123, 686, 909, 931
HpaI GTTAAC 1 cut(s) 598
HpaII CCGG 2 cut(s) 129, 312
HphI GGTGA 3 cut(s) 41, 707, 1107
Hpy166II GTNNAC 4 cut(s) 149, 598, 930, 1041
Hpy188I TCNGA 5 cut(s) 250, 490, 691, 978, 1137
Hpy188III TCNNGA 8 cut(s) 170, 312, 395, 544, 550, 1274, 1286, 1335
Hpy8I GTNNAC 4 cut(s) 149, 598, 930, 1041
Hpy99I CGWCG 4 cut(s) 823, 931, 1042, 1045
HpyAV CCTTC 1 cut(s) 833
HpyCH4III ACNGT 6 cut(s) 112, 465, 583, 617, 695, 1320
HpyCH4IV ACGT 1 cut(s) 594
HpyCH4V TGCA 9 cut(s) 101, 199, 293, 470, 483, 806, 1153, 1240, 1330
HpyF3I CTNAG 3 cut(s) 227, 487, 977
HpySE526I ACGT 1 cut(s) 594
Hsp92II CATG 7 cut(s) 173, 518, 547, 835, 1113, 1289, 1330
HspAI GCGC 1 cut(s) 1035
Kpn2I TCCGGA 1 cut(s) 311
KpnI GGTACC 1 cut(s) 644
Ksp22I TGATCA 2 cut(s) 141, 1066
KspAI GTTAAC 1 cut(s) 598
Kzo9I GATC 7 cut(s) 141, 166, 175, 308, 546, 1066, 1297
LweI GCATC 1 cut(s) 123
MaeI CTAG 6 cut(s) 395, 882, 897, 1005, 1173, 1257
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 4 cut(s) 373, 695, 953, 1267
MalI GATC 7 cut(s) 143, 168, 177, 310, 548, 1068, 1299
MbiI CCGCTC 1 cut(s) 638
MboI GATC 7 cut(s) 141, 166, 175, 308, 546, 1066, 1297
MboII GAAGA 5 cut(s) 185, 516, 912, 1197, 1301
MfeI CAATTG 1 cut(s) 478
MflI RGATCY 2 cut(s) 175, 308
MhlI GDGCHC 1 cut(s) 264
MlsI TGGCCA 1 cut(s) 513
MluCI AATT 7 cut(s) 271, 320, 478, 936, 1188, 1193, 1312
MluNI TGGCCA 1 cut(s) 513
MlyI GAGTC 4 cut(s) 132, 695, 918, 925
MmeI TCCRAC 2 cut(s) 262, 1115
Mox20I TGGCCA 1 cut(s) 513
Mph1103I ATGCAT 1 cut(s) 1332
MroI TCCGGA 1 cut(s) 311
MscI TGGCCA 1 cut(s) 513
MseI TTAA 4 cut(s) 24, 597, 654, 710
Msp20I TGGCCA 1 cut(s) 513
MspA1I CMGCKG 2 cut(s) 296, 1064
MspI CCGG 2 cut(s) 129, 312
MspR9I CCNGG 4 cut(s) 129, 130, 191, 1129
MunI CAATTG 1 cut(s) 478
Mva1269I GAATGC 2 cut(s) 1258, 1330
MvaI CCWGG 2 cut(s) 191, 1129
MvnI CGCG 1 cut(s) 1037
NciI CCSGG 2 cut(s) 129, 130
NcoI CCATGG 2 cut(s) 514, 831
NdeII GATC 7 cut(s) 141, 166, 175, 308, 546, 1066, 1297
NheI GCTAGC 1 cut(s) 1004
NlaIII CATG 7 cut(s) 173, 518, 547, 835, 1113, 1289, 1330
NlaIV GGNNCC 2 cut(s) 310, 642
NmuCI GTSAC 3 cut(s) 373, 695, 953
NsiI ATGCAT 1 cut(s) 1332
PagI TCATGA 3 cut(s) 169, 543, 1285
PaqCI CACCTGC 1 cut(s) 461
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PctI GAATGC 2 cut(s) 1258, 1330
PflFI GACNNNGTC 1 cut(s) 1023
PfoI TCCNGGA 1 cut(s) 189
PleI GAGTC 4 cut(s) 131, 694, 917, 925
PpsI GAGTC 4 cut(s) 131, 694, 917, 925
PshBI ATTAAT 1 cut(s) 24
PsiI TTATAA 1 cut(s) 753
Psp1406I AACGTT 1 cut(s) 594
Psp6I CCWGG 2 cut(s) 189, 1127
PspEI GGTNACC 1 cut(s) 695
PspGI CCWGG 2 cut(s) 189, 1127
PspN4I GGNNCC 2 cut(s) 310, 642
PspPI GGNCC 2 cut(s) 413, 828
PstI CTGCAG 1 cut(s) 295
PsuI RGATCY 2 cut(s) 175, 308
PsyI GACNNNGTC 1 cut(s) 1023
PvuII CAGCTG 2 cut(s) 296, 1064
RsaI GTAC 2 cut(s) 109, 642
RsaNI GTAC 2 cut(s) 108, 641
SalI GTCGAC 2 cut(s) 928, 1039
SaqAI TTAA 4 cut(s) 24, 597, 654, 710
Sau3AI GATC 7 cut(s) 141, 166, 175, 308, 546, 1066, 1297
Sau96I GGNCC 2 cut(s) 413, 828
SchI GAGTC 4 cut(s) 132, 695, 918, 925
ScrFI CCNGG 4 cut(s) 129, 130, 191, 1129
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 1 cut(s) 123
SfcI CTRYAG 2 cut(s) 283, 291
SgrDI CGTCGACG 1 cut(s) 1039
SmaI CCCGGG 1 cut(s) 130
Sse9I AATT 7 cut(s) 271, 320, 478, 936, 1188, 1193, 1312
SsiI CCGC 4 cut(s) 368, 638, 941, 1083
SspI AATATT 1 cut(s) 223
SspMI CTAG 6 cut(s) 395, 882, 897, 1005, 1173, 1257
StyD4I CCNGG 4 cut(s) 127, 128, 189, 1127
StyI CCWWGG 3 cut(s) 514, 831, 1097
TaaI ACNGT 6 cut(s) 112, 465, 583, 617, 695, 1320
TaiI ACGT 1 cut(s) 597
TaqI TCGA 6 cut(s) 590, 768, 821, 929, 1027, 1040
TasI AATT 7 cut(s) 271, 320, 478, 936, 1188, 1193, 1312
TauI GCSGC 2 cut(s) 944, 1085
Tru1I TTAA 4 cut(s) 24, 597, 654, 710
Tru9I TTAA 4 cut(s) 24, 597, 654, 710
TscAI CASTG 2 cut(s) 151, 271
TseFI GTSAC 3 cut(s) 373, 695, 953
Tsp45I GTSAC 3 cut(s) 373, 695, 953
TspDTI ATGAA 5 cut(s) 26, 186, 759, 1265, 1302
TspGWI ACGGA 1 cut(s) 166
TspMI CCCGGG 1 cut(s) 128
TspRI CASTG 2 cut(s) 151, 271
Tth111I GACNNNGTC 1 cut(s) 1023
VspI ATTAAT 1 cut(s) 24
XapI RAATTY 2 cut(s) 320, 1188
XbaI TCTAGA 1 cut(s) 394
XmaI CCCGGG 1 cut(s) 128
XmiI GTMKAC 2 cut(s) 929, 1040
XspI CTAG 6 cut(s) 395, 882, 897, 1005, 1173, 1257
Zsp2I ATGCAT 1 cut(s) 1332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.