Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014193

Physical Location & Seq

Genomic Coordinates Forward (+)

1330488 .. 1332894

Gene Structure 2407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g02280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGCTTTCCTTAACTTCAAGCACCCTCAAACCCACCTTCTCTCCCTTCACCTCCACCACCACCTTCTTAAACCCTCACCAACCTCCCCGCCTCCTCCACCCCAAACCTTCCCTTAAACCCATCTCAGCCTCCATCCAACACCTCCCTTCTTCCACCCCAAAACCAAACCAACAAGTCTACCAACCTTTCCGGCCACCCCCTTCTCCTATCCCAGAGCAATACAGCTCCCTAGACGTCAATGGCCGCCTCGAAATCCTCGCCAACCGACTCGGCTTATGGTACGAGTACGCCCCATTGATCCCATCTCTACTTCAACAGGGCTTCACTCCTCCCACTATTGAAGAAATTACAGGCATCTCTGGAGTCGAGCAGAACCGCCTTGTGGTCGCAGCTCAAGTGAGGGAGTCACTTATCCATTCCAAGACCGACCCTGAAATCATGGCTGAATTTGACACCGGAGGGTCGGAGCTGCTGTATGAGATAAGGCTGCTGAGTGTTCAGCAGCGGGCTGCGGCGGCGAGGTTCATTGTGGAGAAGAAGCTTGATGCTAAAGGAGCTGGAGACCTTGCTCGTGCGACTAAGGATTTTCCGAGGAGGCGTGGGGATAAGGGTTGGGAGAGCTTTGATTATACAAACCCTGGTGATTGTTTGGCGTTTATGTATTATAGACAAGCTAGGGAGCATAATGATATGAGTGAGACTAGGACTGATGCGTTGGAGGAGGCATTGAAGGTTGTGGGGAGTGAGAAGGCGAGGAGTGTGATTGTGAGGGAGTTGGAGGGGGCGAGTGTGAGAGACGAGGAAGAGGAGGTTGTGGCGGTGGTGAAGGTTCCGGTGGTGAGGTTGAAGTTTGGGGAGGTGGGGGAGTCGAGTAGGGTGGTGGTATTGCCGGTATGTAAGGCGGAGGAGAAGGATAAGGAGGTAATGGAGGCGCCGTGGGAGTGTGAGAGTGAAGGAGAGTTGGGGGTGGTGGTGGCGGAGAAGGGGTGGAAGAGGTGGGTGGTGCTGCCGGGGTGGGAGCCGGTTGTGGGGTTAGGAAAGGGAGGAGTGGTGGTGTCGTTTAGCGATGCGAGGGTGTTGCCGTGGAAGGTGAATAGGTGGTATAAGGAGGAGCCGATATTGGTGGTGGCGGATAGGAGTAAGAAAGAGGTGGAAGCTGATGATGGGTTTTATTTGGCAGCCGTGGATGGGGAGGGTTTGGGGTTTAAGGTTGAGAGGGGATCGGCATTGAAGGAAGCAGGGGTGAAGGAGAGTTTGGGGACTGTGGTGTTGATAGTGAGGCCACCAAAAGATGATACAGAAAATGAACTTGCTGAGGAAGATTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840 GO:0110102

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

444

Amino Acids

49.23

Weight (kDa)

5.12

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Raf1_HTH	PF18579	79 - 137	1.1e-24	Rubisco accumulation factor 1 helix turn helix domain
Raf1_N	PF18578	150 - 259	3.1e-36	Rubisco accumulation factor 1 alpha helical domain
RuBisCo_chap_C	PF18087	277 - 430	2.2e-34	Rubisco Assembly chaperone C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04550 AT5G28500 AT5G28500
fragaria_vesca	FvH4_6g02280
malus_domestica	MD04G1228600.v1.1 MD12G1245900.v1.1
prunus_persica	Prupe.6G348600_v2.0.a1
pyrus_communis	pycom12g22550
rosa_chinensis	RchiOBHm_Chr3g0450031
rosa_laevigata	RLG00000025764
rosa_multiflora	Rmu_sc0002646.1_g000021
rosa_roxburghii	Rroxscaffold_6G00427820
rosa_samantha	Rh3AG024000 Rh3BG024600 Rh3CG023600 Rh3DG024600
rosa_wichuraiana	Rw3G001910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	931
AccI	GTMKAC	1 cut(s)	177
AclWI	GGATC	2 cut(s)	292, 1228
AcoI	YGGCCR	2 cut(s)	191, 241
AcsI	RAATTY	1 cut(s)	446
AcyI	GRCGYC	2 cut(s)	234, 932
AfaI	GTAC	2 cut(s)	281, 287
AfiI	CCNNNNNNNGG	3 cut(s)	382, 1028, 1188
AgsI	TTSAA	6 cut(s)	18, 314, 341, 730, 847, 1231
AjnI	CCWGG	1 cut(s)	637
AjuI	GAANNNNNNNTTGG	2 cut(s)	1238, 1270
AluBI	AGCT	8 cut(s)	225, 392, 469, 541, 557, 621, 674, 1157
AluI	AGCT	8 cut(s)	225, 392, 469, 541, 557, 621, 674, 1157
Alw26I	GTCTC	3 cut(s)	555, 692, 789
AlwI	GGATC	2 cut(s)	292, 1228
AoxI	GGCC	3 cut(s)	191, 241, 1280
ApeKI	GCWGC	7 cut(s)	389, 469, 487, 502, 509, 1006, 1178
ApoI	RAATTY	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	934
AsuC2I	CCSGG	1 cut(s)	1011
AsuHPI	GGTGA	7 cut(s)	40, 68, 653, 835, 850, 1102, 1255
BanI	GGYRCC	1 cut(s)	931
BauI	CACGAG	1 cut(s)	570
BbvCI	CCTCAGC	1 cut(s)	1314
BbvI	GCAGC	7 cut(s)	401, 456, 474, 496, 514, 993, 1190
BccI	CCATC	5 cut(s)	128, 140, 310, 1157, 1181
BceAI	ACGGC	3 cut(s)	919, 1066, 1166
BcgI	CGANNNNNNTGC	2 cut(s)	1060, 1094
BciT130I	CCWGG	1 cut(s)	639
BcnI	CCSGG	1 cut(s)	1011
BcoDI	GTCTC	3 cut(s)	555, 692, 789
BfaI	CTAG	3 cut(s)	230, 675, 702
BfoI	RGCGCY	1 cut(s)	935
Bme1390I	CCNGG	2 cut(s)	639, 1011
BmiI	GGNNCC	4 cut(s)	831, 933, 1020, 1113
BmrFI	CCNGG	2 cut(s)	639, 1011
BmsI	GCATC	4 cut(s)	363, 535, 700, 1057
BpmI	CTGGAG	2 cut(s)	381, 579
Bpu10I	CCTNAGC	1 cut(s)	1314
BpuEI	CTTGAG	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	1011
BsaHI	GRCGYC	2 cut(s)	234, 932
BsaI	GGTCTC	1 cut(s)	555
BsaJI	CCNNGG	6 cut(s)	590, 637, 935, 1010, 1082, 1182
BsaWI	WCCGGW	2 cut(s)	455, 832
Bsc4I	CCNNNNNNNGG	3 cut(s)	382, 1028, 1188
Bse118I	RCCGGY	2 cut(s)	889, 1021
BseBI	CCWGG	1 cut(s)	639
BseDI	CCNNGG	6 cut(s)	590, 637, 935, 1010, 1082, 1182
BseGI	GGATG	2 cut(s)	132, 1192
BseLI	CCNNNNNNNGG	3 cut(s)	382, 1028, 1188
BseMII	CTCAG	3 cut(s)	138, 482, 1305
BseRI	GAGGAG	9 cut(s)	83, 318, 607, 734, 769, 821, 920, 1059, 1124
BseXI	GCAGC	7 cut(s)	401, 456, 474, 496, 514, 993, 1190
BshFI	GGCC	3 cut(s)	193, 243, 1282
BshNI	GGYRCC	1 cut(s)	931
BsiSI	CCGG	6 cut(s)	190, 456, 833, 890, 1010, 1022
BslFI	GGGAC	1 cut(s)	1273
BslI	CCNNNNNNNGG	3 cut(s)	382, 1028, 1188
BsmAI	GTCTC	3 cut(s)	555, 692, 789
BsmBI	CGTCTC	1 cut(s)	789
BsmFI	GGGAC	1 cut(s)	1273
BsnI	GGCC	3 cut(s)	193, 243, 1282
Bso31I	GGTCTC	1 cut(s)	555
Bsp143I	GATC	2 cut(s)	297, 1220
BspANI	GGCC	3 cut(s)	193, 243, 1282
BspCNI	CTCAG	3 cut(s)	137, 483, 1306
BspLI	GGNNCC	4 cut(s)	831, 933, 1020, 1113
BspPI	GGATC	2 cut(s)	292, 1228
BspT107I	GGYRCC	1 cut(s)	931
BspTNI	GGTCTC	1 cut(s)	555
BsrFI	RCCGGY	2 cut(s)	889, 1021
BssAI	RCCGGY	2 cut(s)	889, 1021
BssECI	CCNNGG	6 cut(s)	590, 637, 935, 1010, 1082, 1182
BssMI	GATC	2 cut(s)	297, 1220
BssNI	GRCGYC	2 cut(s)	234, 932
BssSI	CACGAG	1 cut(s)	570
Bst2BI	CACGAG	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	639
Bst4CI	ACNGT	1 cut(s)	1264
Bst6I	CTCTTC	2 cut(s)	798, 986
BstACI	GRCGYC	2 cut(s)	234, 932
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	4 cut(s)	124, 491, 579, 1314
BstDSI	CCRYGG	3 cut(s)	935, 1082, 1182
BstF5I	GGATG	2 cut(s)	132, 1192
BstH2I	RGCGCY	1 cut(s)	935
BstHHI	GCGC	1 cut(s)	934
BstKTI	GATC	2 cut(s)	300, 1223
BstMAI	GTCTC	3 cut(s)	555, 692, 789
BstMBI	GATC	2 cut(s)	297, 1220
BstMWI	GCNNNNNNNGC	2 cut(s)	515, 554
BstNI	CCWGG	1 cut(s)	639
BstSCI	CCNGG	2 cut(s)	637, 1009
BstV1I	GCAGC	7 cut(s)	401, 456, 474, 496, 514, 993, 1190
BsuRI	GGCC	3 cut(s)	193, 243, 1282
BtgI	CCRYGG	3 cut(s)	935, 1082, 1182
BtgZI	GCGATG	1 cut(s)	1080
BtsCI	GGATG	2 cut(s)	132, 1192
Cac8I	GCNNGC	1 cut(s)	507
CfoI	GCGC	1 cut(s)	934
Cfr10I	RCCGGY	2 cut(s)	889, 1021
Csp6I	GTAC	2 cut(s)	280, 286
CviAII	CATG	1 cut(s)	439
CviQI	GTAC	2 cut(s)	280, 286
DdeI	CTNAG	4 cut(s)	124, 491, 579, 1314
DinI	GGCGCC	1 cut(s)	933
DpnI	GATC	2 cut(s)	299, 1222
DpnII	GATC	2 cut(s)	297, 1220
EaeI	YGGCCR	2 cut(s)	191, 241
Eam1104I	CTCTTC	2 cut(s)	798, 986
EarI	CTCTTC	2 cut(s)	798, 986
EciI	GGCGGA	3 cut(s)	917, 992, 1145
Eco31I	GGTCTC	1 cut(s)	555
EcoRII	CCWGG	1 cut(s)	637
EgeI	GGCGCC	1 cut(s)	933
EheI	GGCGCC	1 cut(s)	933
Esp3I	CGTCTC	1 cut(s)	789
FaeI	CATG	1 cut(s)	442
FaqI	GGGAC	1 cut(s)	1273
FatI	CATG	1 cut(s)	438
FauI	CCCGC	2 cut(s)	95, 498
FblI	GTMKAC	1 cut(s)	177
FokI	GGATG	2 cut(s)	119, 1199
FspBI	CTAG	3 cut(s)	230, 675, 702
GlaI	GCGC	1 cut(s)	933
GsuI	CTGGAG	2 cut(s)	381, 579
HaeII	RGCGCY	1 cut(s)	935
HaeIII	GGCC	3 cut(s)	193, 243, 1282
HapII	CCGG	6 cut(s)	190, 456, 833, 890, 1010, 1022
HhaI	GCGC	1 cut(s)	934
Hin1I	GRCGYC	2 cut(s)	234, 932
Hin1II	CATG	1 cut(s)	442
Hin6I	GCGC	1 cut(s)	932
HinP1I	GCGC	1 cut(s)	932
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	4 cut(s)	267, 363, 404, 866
HpaII	CCGG	6 cut(s)	190, 456, 833, 890, 1010, 1022
HphI	GGTGA	7 cut(s)	40, 68, 653, 835, 850, 1102, 1255
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	2 cut(s)	466, 591
Hpy188III	TCNNGA	1 cut(s)	360
Hpy8I	GTNNAC	1 cut(s)	178
HpyCH4III	ACNGT	1 cut(s)	1264
HpyCH4IV	ACGT	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	2 cut(s)	515, 554
HpyF3I	CTNAG	4 cut(s)	124, 491, 579, 1314
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	2 cut(s)	234, 932
Hsp92II	CATG	1 cut(s)	442
HspAI	GCGC	1 cut(s)	932
KasI	GGCGCC	1 cut(s)	931
Kzo9I	GATC	2 cut(s)	297, 1220
LmnI	GCTCC	6 cut(s)	230, 466, 554, 679, 1018, 1111
Lsp1109I	GCAGC	7 cut(s)	401, 456, 474, 496, 514, 993, 1190
LweI	GCATC	4 cut(s)	363, 535, 700, 1057
MaeI	CTAG	3 cut(s)	230, 675, 702
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	405
MalI	GATC	2 cut(s)	299, 1222
MboI	GATC	2 cut(s)	297, 1220
MboII	GAAGA	6 cut(s)	141, 353, 547, 815, 1003, 1331
MluCI	AATT	2 cut(s)	345, 446
Mly113I	GGCGCC	1 cut(s)	932
MlyI	GAGTC	4 cut(s)	261, 372, 413, 875
MmeI	TCCRAC	4 cut(s)	160, 444, 696, 756
MseI	TTAA	4 cut(s)	11, 68, 114, 1206
MspA1I	CMGCKG	1 cut(s)	505
MspI	CCGG	6 cut(s)	190, 456, 833, 890, 1010, 1022
MspR9I	CCNGG	2 cut(s)	639, 1011
MvaI	CCWGG	1 cut(s)	639
MwoI	GCNNNNNNNGC	2 cut(s)	515, 554
NarI	GGCGCC	1 cut(s)	932
NciI	CCSGG	1 cut(s)	1011
NdeII	GATC	2 cut(s)	297, 1220
NlaIII	CATG	1 cut(s)	442
NlaIV	GGNNCC	4 cut(s)	831, 933, 1020, 1113
NmeAIII	GCCGAG	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	405
PleI	GAGTC	4 cut(s)	261, 371, 412, 874
PluTI	GGCGCC	1 cut(s)	935
PpsI	GAGTC	4 cut(s)	261, 371, 412, 874
Psp6I	CCWGG	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	4 cut(s)	831, 933, 1020, 1113
RsaI	GTAC	2 cut(s)	281, 287
RsaNI	GTAC	2 cut(s)	280, 286
SaqAI	TTAA	4 cut(s)	11, 68, 114, 1206
Sau3AI	GATC	2 cut(s)	297, 1220
SchI	GAGTC	4 cut(s)	261, 372, 413, 875
ScrFI	CCNGG	2 cut(s)	639, 1011
SfaNI	GCATC	4 cut(s)	363, 535, 700, 1057
SfoI	GGCGCC	1 cut(s)	933
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
Sse9I	AATT	2 cut(s)	345, 446
SspDI	GGCGCC	1 cut(s)	931
SspMI	CTAG	3 cut(s)	230, 675, 702
StyD4I	CCNGG	2 cut(s)	637, 1009
TaaI	ACNGT	1 cut(s)	1264
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	3 cut(s)	249, 366, 869
TaqII	GACCGA	1 cut(s)	440
TasI	AATT	2 cut(s)	345, 446
TauI	GCSGC	3 cut(s)	246, 515, 518
Tru1I	TTAA	4 cut(s)	11, 68, 114, 1206
Tru9I	TTAA	4 cut(s)	11, 68, 114, 1206
TseFI	GTSAC	1 cut(s)	405
TseI	GCWGC	7 cut(s)	389, 469, 487, 502, 509, 1006, 1178
Tsp45I	GTSAC	1 cut(s)	405
TspDTI	ATGAA	2 cut(s)	514, 1320
XapI	RAATTY	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	3 cut(s)	230, 675, 702
ZraI	GACGTC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.