Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014193

Physical Location & Seq

Genomic Coordinates Reverse (-)

29767564 .. 29769752

Gene Structure 2189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G348600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGCTTTCTGTAACAGCAAATATTCTCAAACCCTTCTCATCTTTCAACCCCAACACCAACACCAACACCAACACCAATCTCTTATTATTCTCCACTTCCTTCCTCAACCCACACCCACCACCCCTCCTCTATCCTAAACCTTCTTCTCTAAAGCCCATCTCTGCCACTCTAACTCCCTCCTCAAGCTCCCAACAGCAGCAAGTGTACCAGCCATTCCGCCCACCCCCATCTCCAGTCCCCGCCAAGTTCCGCTCTCTAGACGCCAATGGCCGCCTCGAAATCCTCGCAAATCGCCTCGGCCTCTGGTACGAATTCGCCCCTCTAATCCCGTCCTTACTCCAAGAAGGCTTCACGCCTCCCACCATCGAAGAGGTTACTGGGATTTCCGGTGTCGAGCAGAACCGCCTGGTGGTTGCGGCTCAGGTAAGAGACTCTTTAGTCCAATCCAAGACTGACCCCAAAATTCTTGCGGAATTTGACACCGGGGGTTCCGAGTTGTTGTATGAAATTCGGCTCCTGAGTGTCCAGCAGCGTGCAGCTGCAGCCCGTTACATAATTGAGAACAAGCTTGATGCTAAGGGCACCCAGGACCTGGCCCGTTCTATGAAGGACTTTCCTCGCAGGCGAGGAGATAAAGGGTGGGAGAGCTTTGATTATGCTCACCCTGGAGATTGTCTAGGCTTTATTTATTATAGGCAGGCTAGGGAGCACAAGAACCCCTCTGAACCCAGAACTGCTGCTTTAGAGCAAGCTCTGAAAGTTGCAGGGACTGATAAGGCCAAAAAAATAATTTTGACAGATTTGGAGGGGGAGACTGATGAGAAAGAAGGGAGAGAAGGGGATGTTATAGATGTGGTTCGGGTTCCAGTTGTGAGATTGAAGTTTGGGGAGGTGGCAGAGTCCAGTAAAGTTGTGATTTTGCCGGTTTGTAGGGCAGATGAGAAGGATAAGGAGGTATTGGAGGCACCGTGGGAATGTAGTAGTGAGGGAGAGTTTGGTGTGGTGGTGGCAGAGAAGGGGTGGAAGAGGTGGGTGGTGTTGCCGGGATGGGAGCCGGTGGTAGGTTTAGGAAAGGGGGGAGTGGTGGTGTCGTTTAGTGACGCGAGGGTTTTGCCTTGGAAGGTGAATAGATGGTACAAGGAGGAGCCTATACTGTTGGTGGCTGATAGGAGCAAGAAGGAGGTGACAGCTGATGATGGATTTTATTTGGCAGCAGTTGAGGGTGGGGGTTTGGGGTTTAAGGTTGTGAGGGGATCAGCATTGAAGGAAACTGGCGTGAAGGAAAGTTTAGGGACTGTGGTGATGATAGTGAGGCCACCAAGAGATGAAACAGACGATCAATTGAGCGAAGAGGATTGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840 GO:0110102

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

455

Amino Acids

50.27

Weight (kDa)

5.45

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04550 AT5G28500 AT5G28500
fragaria_vesca	FvH4_6g02280
malus_domestica	MD04G1228600.v1.1 MD12G1245900.v1.1
prunus_persica	Prupe.6G348600_v2.0.a1
pyrus_communis	pycom12g22550
rosa_chinensis	RchiOBHm_Chr3g0450031
rosa_laevigata	RLG00000025764
rosa_multiflora	Rmu_sc0002646.1_g000021
rosa_roxburghii	Rroxscaffold_6G00427820
rosa_samantha	Rh3AG024000 Rh3BG024600 Rh3CG023600 Rh3DG024600
rosa_wichuraiana	Rw3G001910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
AccB1I	GGYRCC	2 cut(s)	581, 964
AccB7I	CCANNNNNTGG	1 cut(s)	592
AccBSI	CCGCTC	1 cut(s)	252
AccII	CGCG	1 cut(s)	1103
AciI	CCGC	7 cut(s)	217, 240, 250, 271, 403, 416, 470
AclWI	GGATC	1 cut(s)	1261
AcoI	YGGCCR	1 cut(s)	268
AcsI	RAATTY	4 cut(s)	311, 462, 473, 507
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	3 cut(s)	206, 308, 1136
AfiI	CCNNNNNNNGG	3 cut(s)	409, 592, 1061
AgsI	TTSAA	3 cut(s)	46, 880, 1264
AjnI	CCWGG	4 cut(s)	405, 585, 591, 664
AluBI	AGCT	6 cut(s)	186, 539, 568, 648, 752, 1190
AluI	AGCT	6 cut(s)	186, 539, 568, 648, 752, 1190
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	2 cut(s)	423, 806
AlwI	GGATC	1 cut(s)	1261
AlwNI	CAGNNNCTG	2 cut(s)	592, 770
AoxI	GGCC	5 cut(s)	268, 298, 594, 777, 1313
ApeKI	GCWGC	7 cut(s)	196, 529, 536, 539, 542, 737, 1211
ApoI	RAATTY	4 cut(s)	311, 462, 473, 507
AspS9I	GGNCC	2 cut(s)	589, 595
AsuC2I	CCSGG	2 cut(s)	484, 1044
AsuHPI	GGTGA	4 cut(s)	653, 1135, 1195, 1312
AvaII	GGWCC	1 cut(s)	589
BaeGI	GKGCMC	1 cut(s)	584
BanI	GGYRCC	2 cut(s)	581, 964
Bbv12I	GWGCWC	1 cut(s)	711
BbvI	GCAGC	7 cut(s)	208, 526, 541, 548, 554, 724, 1223
BccI	CCATC	6 cut(s)	164, 235, 371, 1041, 1125, 1190
BcgI	CGANNNNNNTGC	2 cut(s)	1093, 1127
BciT130I	CCWGG	4 cut(s)	407, 587, 593, 666
BcnI	CCSGG	2 cut(s)	484, 1044
BcoDI	GTCTC	2 cut(s)	423, 806
BfaI	CTAG	3 cut(s)	257, 677, 702
BfmI	CTRYAG	1 cut(s)	540
BisI	GCNGC	9 cut(s)	197, 271, 417, 530, 537, 540, 543, 738, 1212
BlsI	GCNGC	9 cut(s)	198, 272, 418, 531, 538, 541, 544, 739, 1213
Bme1390I	CCNGG	6 cut(s)	407, 484, 587, 593, 666, 1044
Bme18I	GGWCC	1 cut(s)	589
BmgT120I	GGNCC	2 cut(s)	589, 595
BmiI	GGNNCC	7 cut(s)	490, 515, 583, 864, 966, 1053, 1146
BmrFI	CCNGG	6 cut(s)	407, 484, 587, 593, 666, 1044
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	1 cut(s)	562
BmuI	ACTGGG	1 cut(s)	387
BpmI	CTGGAG	2 cut(s)	216, 687
Bpu10I	CCTNAGC	2 cut(s)	420, 576
BpuEI	CTTGAG	1 cut(s)	166
BpuMI	CCSGG	2 cut(s)	484, 1044
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	6 cut(s)	295, 483, 585, 664, 968, 1115
BsaWI	WCCGGW	1 cut(s)	386
BsaXI	ACNNNNNCTCC	8 cut(s)	108, 138, 157, 187, 953, 983, 1071, 1101
Bsc4I	CCNNNNNNNGG	3 cut(s)	409, 592, 1061
Bse118I	RCCGGY	2 cut(s)	922, 1054
Bse1I	ACTGG	5 cut(s)	233, 382, 866, 903, 1276
BseBI	CCWGG	4 cut(s)	407, 587, 593, 666
BseDI	CCNNGG	6 cut(s)	295, 483, 585, 664, 968, 1115
BseGI	GGATG	2 cut(s)	847, 1052
BseLI	CCNNNNNNNGG	3 cut(s)	409, 592, 1061
BseMII	CTCAG	2 cut(s)	434, 509
BseNI	ACTGG	5 cut(s)	233, 382, 866, 903, 1276
BseRI	GAGGAG	4 cut(s)	116, 169, 642, 1157
BseSI	GKGCMC	1 cut(s)	584
BseXI	GCAGC	7 cut(s)	208, 526, 541, 548, 554, 724, 1223
BsgI	GTGCAG	1 cut(s)	555
Bsh1236I	CGCG	1 cut(s)	1103
BshFI	GGCC	5 cut(s)	270, 300, 596, 779, 1315
BshNI	GGYRCC	2 cut(s)	581, 964
BsiHKAI	GWGCWC	1 cut(s)	711
BsiSI	CCGG	5 cut(s)	387, 483, 923, 1043, 1055
BslFI	GGGAC	3 cut(s)	221, 781, 1306
BslI	CCNNNNNNNGG	3 cut(s)	409, 592, 1061
BsmAI	GTCTC	2 cut(s)	423, 806
BsmFI	GGGAC	3 cut(s)	221, 781, 1306
BsnI	GGCC	5 cut(s)	270, 300, 596, 779, 1315
Bsp1286I	GDGCHC	2 cut(s)	584, 711
Bsp143I	GATC	2 cut(s)	1253, 1336
BspACI	CCGC	7 cut(s)	217, 240, 250, 271, 403, 416, 470
BspANI	GGCC	5 cut(s)	270, 300, 596, 779, 1315
BspCNI	CTCAG	2 cut(s)	433, 510
BspFNI	CGCG	1 cut(s)	1103
BspLI	GGNNCC	7 cut(s)	490, 515, 583, 864, 966, 1053, 1146
BspMAI	CTGCAG	1 cut(s)	544
BspPI	GGATC	1 cut(s)	1261
BspT107I	GGYRCC	2 cut(s)	581, 964
BsrBI	CCGCTC	1 cut(s)	252
BsrFI	RCCGGY	2 cut(s)	922, 1054
BsrI	ACTGG	5 cut(s)	233, 382, 866, 903, 1276
BssAI	RCCGGY	2 cut(s)	922, 1054
BssECI	CCNNGG	6 cut(s)	295, 483, 585, 664, 968, 1115
BssMI	GATC	2 cut(s)	1253, 1336
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	1115
Bst2UI	CCWGG	4 cut(s)	407, 587, 593, 666
Bst4CI	ACNGT	3 cut(s)	969, 1155, 1297
Bst6I	CTCTTC	3 cut(s)	363, 1019, 1344
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	4 cut(s)	534, 623, 699, 750
BstDEI	CTNAG	3 cut(s)	420, 518, 576
BstDSI	CCRYGG	1 cut(s)	968
BstF5I	GGATG	2 cut(s)	847, 1052
BstFNI	CGCG	1 cut(s)	1103
BstKTI	GATC	2 cut(s)	1256, 1339
BstMAI	GTCTC	2 cut(s)	423, 806
BstMBI	GATC	2 cut(s)	1253, 1336
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	4 cut(s)	407, 587, 593, 666
BstSCI	CCNGG	6 cut(s)	405, 482, 585, 591, 664, 1042
BstSFI	CTRYAG	1 cut(s)	540
BstSLI	GKGCMC	1 cut(s)	584
BstUI	CGCG	1 cut(s)	1103
BstV1I	GCAGC	7 cut(s)	208, 526, 541, 548, 554, 724, 1223
BsuRI	GGCC	5 cut(s)	270, 300, 596, 779, 1315
BtgI	CCRYGG	1 cut(s)	968
BtsCI	GGATG	2 cut(s)	847, 1052
Cac8I	GCNNGC	4 cut(s)	534, 623, 699, 750
CaiI	CAGNNNCTG	2 cut(s)	592, 770
Cfr10I	RCCGGY	2 cut(s)	922, 1054
Cfr13I	GGNCC	2 cut(s)	589, 595
CseI	GACGC	2 cut(s)	269, 1109
Csp6I	GTAC	3 cut(s)	205, 307, 1135
CviQI	GTAC	3 cut(s)	205, 307, 1135
DdeI	CTNAG	3 cut(s)	420, 518, 576
DpnI	GATC	2 cut(s)	1255, 1338
DpnII	GATC	2 cut(s)	1253, 1336
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
EaeI	YGGCCR	1 cut(s)	268
Eam1104I	CTCTTC	3 cut(s)	363, 1019, 1344
EarI	CTCTTC	3 cut(s)	363, 1019, 1344
EciI	GGCGGA	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	1115
Eco47I	GGWCC	1 cut(s)	589
EcoO109I	RGGNCCY	1 cut(s)	589
EcoRI	GAATTC	1 cut(s)	311
EcoRII	CCWGG	4 cut(s)	405, 585, 591, 664
EcoT14I	CCWWGG	1 cut(s)	1115
ErhI	CCWWGG	1 cut(s)	1115
FaiI	YATR	7 cut(s)	504, 554, 605, 657, 693, 848, 1151
FalI	AAGNNNNNCTT	2 cut(s)	418, 450
FaqI	GGGAC	3 cut(s)	221, 781, 1306
FauI	CCCGC	1 cut(s)	247
Fnu4HI	GCNGC	9 cut(s)	197, 271, 417, 530, 537, 540, 543, 738, 1212
FokI	GGATG	2 cut(s)	854, 1059
Fsp4HI	GCNGC	9 cut(s)	197, 271, 417, 530, 537, 540, 543, 738, 1212
FspBI	CTAG	3 cut(s)	257, 677, 702
GluI	GCNGC	9 cut(s)	197, 271, 417, 530, 537, 540, 543, 738, 1212
GsuI	CTGGAG	2 cut(s)	216, 687
HaeIII	GGCC	5 cut(s)	270, 300, 596, 779, 1315
HapII	CCGG	5 cut(s)	387, 483, 923, 1043, 1055
HgaI	GACGC	2 cut(s)	269, 1109
Hin1I	GRCGYC	1 cut(s)	261
HindIII	AAGCTT	1 cut(s)	566
HinfI	GANTC	2 cut(s)	431, 899
HpaII	CCGG	5 cut(s)	387, 483, 923, 1043, 1055
HphI	GGTGA	4 cut(s)	653, 1135, 1195, 1312
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	3 cut(s)	493, 724, 756
Hpy188III	TCNNGA	2 cut(s)	257, 517
Hpy8I	GTNNAC	1 cut(s)	205
HpyCH4III	ACNGT	3 cut(s)	969, 1155, 1297
HpyCH4V	TGCA	3 cut(s)	536, 542, 764
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	3 cut(s)	420, 518, 576
Hsp92I	GRCGYC	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	1253, 1336
LmnI	GCTCC	6 cut(s)	191, 519, 706, 1051, 1144, 1170
Lsp1109I	GCAGC	7 cut(s)	208, 526, 541, 548, 554, 724, 1223
LweI	GCATC	1 cut(s)	562
MaeI	CTAG	3 cut(s)	257, 677, 702
MaeIII	GTNAC	5 cut(s)	10, 373, 548, 1097, 1183
MalI	GATC	2 cut(s)	1255, 1338
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	2 cut(s)	1253, 1336
MboII	GAAGA	4 cut(s)	135, 380, 1036, 1361
MfeI	CAATTG	1 cut(s)	1340
MhlI	GDGCHC	2 cut(s)	584, 711
MluCI	AATT	7 cut(s)	311, 462, 473, 507, 555, 789, 1340
MlyI	GAGTC	2 cut(s)	425, 908
MseI	TTAA	1 cut(s)	1239
MspA1I	CMGCKG	2 cut(s)	539, 1190
MspI	CCGG	5 cut(s)	387, 483, 923, 1043, 1055
MspR9I	CCNGG	6 cut(s)	407, 484, 587, 593, 666, 1044
MunI	CAATTG	1 cut(s)	1340
MvaI	CCWGG	4 cut(s)	407, 587, 593, 666
MvnI	CGCG	1 cut(s)	1103
MwoI	GCNNNNNNNGC	1 cut(s)	542
NciI	CCSGG	2 cut(s)	484, 1044
NdeII	GATC	2 cut(s)	1253, 1336
NlaIV	GGNNCC	7 cut(s)	490, 515, 583, 864, 966, 1053, 1146
NmeAIII	GCCGAG	1 cut(s)	276
NmuCI	GTSAC	2 cut(s)	1097, 1183
PflMI	CCANNNNNTGG	1 cut(s)	592
PkrI	GCNGC	9 cut(s)	198, 272, 418, 531, 538, 541, 544, 739, 1213
PleI	GAGTC	2 cut(s)	425, 907
PpsI	GAGTC	2 cut(s)	425, 907
PpuMI	RGGWCCY	1 cut(s)	589
Psp5II	RGGWCCY	1 cut(s)	589
Psp6I	CCWGG	4 cut(s)	405, 585, 591, 664
PspGI	CCWGG	4 cut(s)	405, 585, 591, 664
PspN4I	GGNNCC	7 cut(s)	490, 515, 583, 864, 966, 1053, 1146
PspPI	GGNCC	2 cut(s)	589, 595
PspPPI	RGGWCCY	1 cut(s)	589
PstI	CTGCAG	1 cut(s)	544
PstNI	CAGNNNCTG	2 cut(s)	592, 770
PvuII	CAGCTG	2 cut(s)	539, 1190
RsaI	GTAC	3 cut(s)	206, 308, 1136
RsaNI	GTAC	3 cut(s)	205, 307, 1135
SaqAI	TTAA	1 cut(s)	1239
SatI	GCNGC	9 cut(s)	197, 271, 417, 530, 537, 540, 543, 738, 1212
Sau3AI	GATC	2 cut(s)	1253, 1336
Sau96I	GGNCC	2 cut(s)	589, 595
SchI	GAGTC	2 cut(s)	425, 908
ScrFI	CCNGG	6 cut(s)	407, 484, 587, 593, 666, 1044
SduI	GDGCHC	2 cut(s)	584, 711
SfaNI	GCATC	1 cut(s)	562
SfcI	CTRYAG	1 cut(s)	540
SinI	GGWCC	1 cut(s)	589
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	7 cut(s)	311, 462, 473, 507, 555, 789, 1340
SsiI	CCGC	7 cut(s)	217, 240, 250, 271, 403, 416, 470
SspI	AATATT	1 cut(s)	22
SspMI	CTAG	3 cut(s)	257, 677, 702
StyD4I	CCNGG	6 cut(s)	405, 482, 585, 591, 664, 1042
StyI	CCWWGG	1 cut(s)	1115
TaaI	ACNGT	3 cut(s)	969, 1155, 1297
TaqI	TCGA	3 cut(s)	276, 366, 393
TasI	AATT	7 cut(s)	311, 462, 473, 507, 555, 789, 1340
TauI	GCSGC	2 cut(s)	273, 419
Tru1I	TTAA	1 cut(s)	1239
Tru9I	TTAA	1 cut(s)	1239
TseFI	GTSAC	2 cut(s)	1097, 1183
TseI	GCWGC	7 cut(s)	196, 529, 536, 539, 542, 737, 1211
Tsp45I	GTSAC	2 cut(s)	1097, 1183
TspDTI	ATGAA	3 cut(s)	519, 620, 1341
Van91I	CCANNNNNTGG	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	589
XapI	RAATTY	4 cut(s)	311, 462, 473, 507
XbaI	TCTAGA	1 cut(s)	256
XspI	CTAG	3 cut(s)	257, 677, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.