Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014193

Physical Location & Seq

Genomic Coordinates Forward (+)

1675598 .. 1677014

Gene Structure 1417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41737

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTCCTCGGTTGAGCAGAACCGACTAGTCGTGGCAGCTAAAGTGAGGGACTCTCTGATCCATTCCAAGACGGACCCAGAAATCGTGGCGGAGTTTGACACCGGAGGGTCGGAGTTGTTGTATGAAATAAGGCTGCTCAGTGTTCAGCAGCGGGCGGCGGCGGCGAGGTTCATTTTGGAGAAGAAGCTTGATGCAAAAGGAGCTGAGGACCTCGCACGTGCCACTAAGGACTTCCCAAGGAGGCGCGGGGATAAGGGTTGGGAGAGCTTTGATTATACACACCCTGGAGATTGTTTGGCGTTTATGTACTATAGGCAAGCTAGGGAGCATAAGAATCCTTCTGAGCCTAGGACTTCGGCTTTGGAGGAGGCATTGAAGGTTGTGGAGAGTGAGAAGGCGAGGAATGTGATTCTTAAGGAGTTGGGAGGGGAGAGTGGGGAGAGTGAAGAGGAAGGGGATGTTGTGGCGGGGGTGAAGGTTCCGGTGGTGAGGTTACAGTTTGGGGAGGTGGCAGAGTCGAGTAGGGTGGTGATATTGCCGGTTTGTAAGGCGGAGGAGAAGGATAAGGAGGTAATGGAGGCGCCGTGGGAGTGTGAGAGTGAGGGGGAGTTTGGTGTGGTGGTGGCGGAGAAGGGGTGGAAGAGGTGGGTGGTGCTGCCGGGGTGGGAGCCGGTTGTGGGGTTAGGAAAGGGGGGAGTGGTGGTGTCGTTTAGCGATGCTAGGGTGTTGCCATGGAAGGTGAATAGGTGGTATAAGGAGGAGCCTATATTGGTGGTGGCTGATAGGAGTAAGAAGGATGTGGAAGCTGATGATGGGTTTTATTTGGCAGCCATGGATGGGGGTGATATGGGGTTTAAGGTTGAGAGGGGATCGGCATTGAAGGAAGCTGGTGTGACGGAGAGTTTGGGGACTGTGGTGTTGATAGTGAGGCCACCAAAAGATGAGACAGAAAATGAATTGGCTGACGAAGATTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840 GO:0110102

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

326

Amino Acids

36.21

Weight (kDa)

4.86

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Raf1_N	PF18578	32 - 141	5.7e-38	Rubisco accumulation factor 1 alpha helical domain
RuBisCo_chap_C	PF18087	160 - 313	8e-36	Rubisco Assembly chaperone C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04550 AT5G28500 AT5G28500
fragaria_vesca	FvH4_6g02280
malus_domestica	MD04G1228600.v1.1 MD12G1245900.v1.1
prunus_persica	Prupe.6G348600_v2.0.a1
pyrus_communis	pycom12g22550
rosa_chinensis	RchiOBHm_Chr3g0450031
rosa_laevigata	RLG00000025764
rosa_multiflora	Rmu_sc0002646.1_g000021
rosa_roxburghii	Rroxscaffold_6G00427820
rosa_samantha	Rh3AG024000 Rh3BG024600 Rh3CG023600 Rh3DG024600
rosa_wichuraiana	Rw3G001910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	580
AccII	CGCG	1 cut(s)	246
AciI	CCGC	9 cut(s)	89, 151, 155, 158, 161, 246, 467, 551, 626
AclWI	GGATC	2 cut(s)	52, 877
AcvI	CACGTG	1 cut(s)	218
AcyI	GRCGYC	1 cut(s)	581
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	2 cut(s)	677, 837
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	2 cut(s)	376, 880
AhlI	ACTAGT	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	7 cut(s)	38, 187, 203, 267, 320, 806, 887
AluI	AGCT	7 cut(s)	38, 187, 203, 267, 320, 806, 887
Alw26I	GTCTC	1 cut(s)	938
AlwI	GGATC	2 cut(s)	52, 877
AoxI	GGCC	1 cut(s)	929
ApeKI	GCWGC	5 cut(s)	35, 133, 148, 655, 827
ArsI	GACNNNNNNTTYG	4 cut(s)	343, 375, 886, 918
AspA2I	CCTAGG	1 cut(s)	347
AspLEI	GCGC	2 cut(s)	246, 583
AspS9I	GGNCC	2 cut(s)	73, 208
AsuC2I	CCSGG	1 cut(s)	660
AsuHPI	GGTGA	5 cut(s)	484, 499, 541, 751, 854
AvaII	GGWCC	2 cut(s)	73, 208
AvrII	CCTAGG	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	580
BbrPI	CACGTG	1 cut(s)	218
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	5 cut(s)	47, 120, 160, 642, 839
BccI	CCATC	2 cut(s)	806, 830
BceAI	ACGGC	1 cut(s)	568
BciT130I	CCWGG	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	660
BcoDI	GTCTC	1 cut(s)	938
BcuI	ACTAGT	1 cut(s)	25
BfaI	CTAG	4 cut(s)	26, 321, 348, 720
BfmI	CTRYAG	1 cut(s)	310
BfoI	RGCGCY	1 cut(s)	584
BfrI	CTTAAG	1 cut(s)	413
BisI	GCNGC	8 cut(s)	36, 134, 149, 156, 159, 162, 656, 828
BlnI	CCTAGG	1 cut(s)	347
BlsI	GCNGC	8 cut(s)	37, 135, 150, 157, 160, 163, 657, 829
Bme1390I	CCNGG	2 cut(s)	285, 660
Bme18I	GGWCC	2 cut(s)	73, 208
BmgT120I	GGNCC	2 cut(s)	73, 208
BmiI	GGNNCC	5 cut(s)	75, 480, 582, 669, 762
BmrFI	CCNGG	2 cut(s)	285, 660
BmsI	GCATC	2 cut(s)	181, 706
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
BpmI	CTGGAG	1 cut(s)	306
Bpu10I	CCTNAGC	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	660
BsaAI	YACGTR	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	581
BsaJI	CCNNGG	8 cut(s)	6, 236, 283, 347, 584, 659, 731, 831
BsaWI	WCCGGW	2 cut(s)	101, 481
BsaXI	ACNNNNNCTCC	8 cut(s)	104, 134, 569, 599, 620, 650, 687, 717
Bsc4I	CCNNNNNNNGG	2 cut(s)	677, 837
Bse118I	RCCGGY	2 cut(s)	538, 670
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	8 cut(s)	6, 236, 283, 347, 584, 659, 731, 831
BseGI	GGATG	3 cut(s)	463, 802, 841
BseLI	CCNNNNNNNGG	2 cut(s)	677, 837
BseMII	CTCAG	3 cut(s)	151, 195, 333
BseRI	GAGGAG	3 cut(s)	380, 569, 773
BseXI	GCAGC	5 cut(s)	47, 120, 160, 642, 839
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	931
BshNI	GGYRCC	1 cut(s)	580
BsiSI	CCGG	5 cut(s)	102, 482, 539, 659, 671
BslFI	GGGAC	2 cut(s)	62, 922
BslI	CCNNNNNNNGG	2 cut(s)	677, 837
BsmAI	GTCTC	1 cut(s)	938
BsmFI	GGGAC	2 cut(s)	62, 922
BsnI	GGCC	1 cut(s)	931
Bsp143I	GATC	2 cut(s)	57, 869
Bsp19I	CCATGG	2 cut(s)	731, 831
BspACI	CCGC	9 cut(s)	89, 151, 155, 158, 161, 246, 467, 551, 626
BspANI	GGCC	1 cut(s)	931
BspCNI	CTCAG	3 cut(s)	150, 196, 334
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	5 cut(s)	75, 480, 582, 669, 762
BspPI	GGATC	2 cut(s)	52, 877
BspT107I	GGYRCC	1 cut(s)	580
BspTI	CTTAAG	1 cut(s)	413
BsrFI	RCCGGY	2 cut(s)	538, 670
BssAI	RCCGGY	2 cut(s)	538, 670
BssECI	CCNNGG	8 cut(s)	6, 236, 283, 347, 584, 659, 731, 831
BssMI	GATC	2 cut(s)	57, 869
BssNI	GRCGYC	1 cut(s)	581
BssT1I	CCWWGG	4 cut(s)	236, 347, 731, 831
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	498, 913
Bst6I	CTCTTC	2 cut(s)	441, 635
BstACI	GRCGYC	1 cut(s)	581
BstAFI	CTTAAG	1 cut(s)	413
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	2 cut(s)	153, 318
BstDEI	CTNAG	4 cut(s)	137, 204, 225, 342
BstDSI	CCRYGG	3 cut(s)	584, 731, 831
BstF5I	GGATG	3 cut(s)	463, 802, 841
BstFNI	CGCG	1 cut(s)	246
BstH2I	RGCGCY	1 cut(s)	584
BstHHI	GCGC	2 cut(s)	246, 583
BstKTI	GATC	2 cut(s)	60, 872
BstMAI	GTCTC	1 cut(s)	938
BstMBI	GATC	2 cut(s)	57, 869
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 200
BstNI	CCWGG	1 cut(s)	285
BstSCI	CCNGG	2 cut(s)	283, 658
BstSFI	CTRYAG	1 cut(s)	310
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	5 cut(s)	47, 120, 160, 642, 839
BsuRI	GGCC	1 cut(s)	931
BtgI	CCRYGG	3 cut(s)	584, 731, 831
BtgZI	GCGATG	1 cut(s)	729
BtsCI	GGATG	3 cut(s)	463, 802, 841
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	2 cut(s)	153, 318
CfoI	GCGC	2 cut(s)	246, 583
Cfr10I	RCCGGY	2 cut(s)	538, 670
Cfr13I	GGNCC	2 cut(s)	73, 208
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	2 cut(s)	732, 832
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	4 cut(s)	137, 204, 225, 342
DinI	GGCGCC	1 cut(s)	582
DpnI	GATC	2 cut(s)	59, 871
DpnII	GATC	2 cut(s)	57, 869
Eam1104I	CTCTTC	2 cut(s)	441, 635
EarI	CTCTTC	2 cut(s)	441, 635
EciI	GGCGGA	3 cut(s)	104, 566, 641
Eco130I	CCWWGG	4 cut(s)	236, 347, 731, 831
Eco47I	GGWCC	2 cut(s)	73, 208
Eco72I	CACGTG	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	4 cut(s)	236, 347, 731, 831
EgeI	GGCGCC	1 cut(s)	582
EheI	GGCGCC	1 cut(s)	582
ErhI	CCWWGG	4 cut(s)	236, 347, 731, 831
FaeI	CATG	2 cut(s)	735, 835
FaqI	GGGAC	2 cut(s)	62, 922
FatI	CATG	2 cut(s)	731, 831
FauI	CCCGC	3 cut(s)	144, 239, 460
Fnu4HI	GCNGC	8 cut(s)	36, 134, 149, 156, 159, 162, 656, 828
FokI	GGATG	3 cut(s)	470, 809, 848
Fsp4HI	GCNGC	8 cut(s)	36, 134, 149, 156, 159, 162, 656, 828
FspBI	CTAG	4 cut(s)	26, 321, 348, 720
GlaI	GCGC	2 cut(s)	245, 582
GluI	GCNGC	8 cut(s)	36, 134, 149, 156, 159, 162, 656, 828
GsuI	CTGGAG	1 cut(s)	306
HaeII	RGCGCY	1 cut(s)	584
HaeIII	GGCC	1 cut(s)	931
HapII	CCGG	5 cut(s)	102, 482, 539, 659, 671
HhaI	GCGC	2 cut(s)	246, 583
Hin1I	GRCGYC	1 cut(s)	581
Hin1II	CATG	2 cut(s)	735, 835
Hin6I	GCGC	2 cut(s)	244, 581
HinP1I	GCGC	2 cut(s)	244, 581
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	4 cut(s)	50, 334, 409, 515
HpaII	CCGG	5 cut(s)	102, 482, 539, 659, 671
HphI	GGTGA	5 cut(s)	484, 499, 541, 751, 854
Hpy188I	TCNGA	3 cut(s)	57, 112, 343
HpyCH4III	ACNGT	2 cut(s)	498, 913
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 200
HpyF3I	CTNAG	4 cut(s)	137, 204, 225, 342
HpySE526I	ACGT	1 cut(s)	217
Hsp92I	GRCGYC	1 cut(s)	581
Hsp92II	CATG	2 cut(s)	735, 835
HspAI	GCGC	2 cut(s)	244, 581
KasI	GGCGCC	1 cut(s)	580
Kzo9I	GATC	2 cut(s)	57, 869
LmnI	GCTCC	4 cut(s)	200, 325, 667, 760
LpnPI	CCDG	9 cut(s)	90, 115, 270, 297, 495, 552, 672, 684, 873
Lsp1109I	GCAGC	5 cut(s)	47, 120, 160, 642, 839
LweI	GCATC	2 cut(s)	181, 706
MaeI	CTAG	4 cut(s)	26, 321, 348, 720
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	2 cut(s)	492, 892
MalI	GATC	2 cut(s)	59, 871
MboI	GATC	2 cut(s)	57, 869
MboII	GAAGA	4 cut(s)	193, 458, 652, 980
MluCI	AATT	1 cut(s)	956
Mly113I	GGCGCC	1 cut(s)	581
MlyI	GAGTC	2 cut(s)	44, 524
MmeI	TCCRAC	1 cut(s)	90
MseI	TTAA	2 cut(s)	414, 855
MspA1I	CMGCKG	1 cut(s)	151
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	5 cut(s)	102, 482, 539, 659, 671
MspR9I	CCNGG	2 cut(s)	285, 660
MvaI	CCWGG	1 cut(s)	285
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	161, 200
NarI	GGCGCC	1 cut(s)	581
NciI	CCSGG	1 cut(s)	660
NcoI	CCATGG	2 cut(s)	731, 831
NdeII	GATC	2 cut(s)	57, 869
NlaIII	CATG	2 cut(s)	735, 835
NlaIV	GGNNCC	5 cut(s)	75, 480, 582, 669, 762
NmuCI	GTSAC	1 cut(s)	892
PfeI	GAWTC	2 cut(s)	334, 409
PkrI	GCNGC	8 cut(s)	37, 135, 150, 157, 160, 163, 657, 829
PleI	GAGTC	2 cut(s)	44, 523
PluTI	GGCGCC	1 cut(s)	584
PmaCI	CACGTG	1 cut(s)	218
PmlI	CACGTG	1 cut(s)	218
PpsI	GAGTC	2 cut(s)	44, 523
Ppu21I	YACGTR	1 cut(s)	218
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	283
PspCI	CACGTG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	5 cut(s)	75, 480, 582, 669, 762
PspPI	GGNCC	2 cut(s)	73, 208
PspPPI	RGGWCCY	1 cut(s)	208
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SaqAI	TTAA	2 cut(s)	414, 855
SatI	GCNGC	8 cut(s)	36, 134, 149, 156, 159, 162, 656, 828
Sau3AI	GATC	2 cut(s)	57, 869
Sau96I	GGNCC	2 cut(s)	73, 208
SchI	GAGTC	2 cut(s)	44, 524
ScrFI	CCNGG	2 cut(s)	285, 660
SfaNI	GCATC	2 cut(s)	181, 706
SfcI	CTRYAG	1 cut(s)	310
SfoI	GGCGCC	1 cut(s)	582
SinI	GGWCC	2 cut(s)	73, 208
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
SpeI	ACTAGT	1 cut(s)	25
Sse9I	AATT	1 cut(s)	956
SsiI	CCGC	9 cut(s)	89, 151, 155, 158, 161, 246, 467, 551, 626
SspDI	GGCGCC	1 cut(s)	580
SspMI	CTAG	4 cut(s)	26, 321, 348, 720
StyD4I	CCNGG	2 cut(s)	283, 658
StyI	CCWWGG	4 cut(s)	236, 347, 731, 831
TaaI	ACNGT	2 cut(s)	498, 913
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	1 cut(s)	518
TasI	AATT	1 cut(s)	956
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	3 cut(s)	158, 161, 164
TfiI	GAWTC	2 cut(s)	334, 409
Tru1I	TTAA	2 cut(s)	414, 855
Tru9I	TTAA	2 cut(s)	414, 855
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	892
TseI	GCWGC	5 cut(s)	35, 133, 148, 655, 827
Tsp45I	GTSAC	1 cut(s)	892
TspDTI	ATGAA	3 cut(s)	138, 160, 969
TspGWI	ACGGA	2 cut(s)	86, 911
TspRI	CASTG	1 cut(s)	145
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	73, 208
XmaJI	CCTAGG	1 cut(s)	347
XspI	CTAG	4 cut(s)	26, 321, 348, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.