FvH4_6g03420

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
1888384 .. 1894566
6183 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03420.t1

Sequence Viewer

Length: 1710 bp
ATGGCTTCTTGGGTGCTCTTACCGGTTGCTCCATTAACCAGTCGATGCCTGGTGGCTCCGGTGAGGTCCCAGAGGTCCTCCTCCATCAGTGTTCGATCCTCTCTTGACACAAATGTGTCTGACATGAGTGTAAATGCTCCCAAAGGTTTGTTTCCACCTGAACCTGAACACTATCGAGGGCCGAAGCTAAAAGTGGCTATTATTGGAGCTGGGCTTGCAGGCATGTCAACAGCTGTTGAGCTTTTGGATCAAGGCCATGAGGTGGATATCTACGAGTCTAGGCCTTTCATTGGTGGAAAAGTGGGCTCTTTTGTTGATAAACGTGGAAATCACATTGAAATGGGACTCCACGTTTTCTTTGGTTGTTACAGTAATCTTTTCAGATTAATGAAAAAGGTGGGCGCAGAAGAAAATCTACTTGTGAAGGATCATACTCACACTTTTGTTAACAAAGGGGGTCAAATTGGCGAACTTGATTTTCGGTTTCCAATTGGAGCTCCCATACATGGAATTCTTGCGTTTTTATCTACAAATCAGATCAAGACTTATGATAAAGCCAGAAATGCATTGGCTCTTGCATTGAGTCCAGTCGTCAAGGCTCTGGTTGATCCAGATGGAGCATTGAGCGATGTACGGGATTTAGATAGTATAAGCTTCTCAGATTGGTTCATGTCCAAAGGTGGCACACGCACAAGTATCCAGAGAATGTGGGATCCTGTCGCGTATGCTCTTGGGTTCATTGACTGTGACAATATCAGTGCTCGTTGTATGCTCACTATATTCACGTTGTTTGCCACTAAGACCGAGGCATCCCTGCTTCGCATGCTTAAGGGTTCTCCAGATGTTTACTTGAGTGGCCCCATCAGAAAGTATATTATTGACAAGGGGGGAAGGTTTCATCTTCGGTGGGGATGCAGAGAGATATTATATGATAAATCTGCTGATGGAGAAACTTATGTTGCAGGCCTTGCCATGTCTAAGGCTACCAATAAGCAAACTGTGAAAGCAGATGCCTATGTTGCAGCATGCGATGTGCCTGGAATCAAGAGATTGCTTCCGTCCCAGTGGAGGGAATGGGAATTTTTCAATAATATTTATGAACTAGTTGGAGTTCCTGTTGTCACTGTGCAACTTAGATACGATGGATGGGTCACAGAGATGCAGGATCTAGAACGGTCAAGGCAATTGAAGCAAGCTTTGGGATTGGATAACCTTCTCTATACTCCCGATGCCGATTTTTCATGCTTTGCCGACCTAGCACTTACTTCTCCAGAAGATTACTATATTGAAGGACAAGGTTCACTGCTGCAATGTGTGTTGACACCAGGTGATCCTTACATGCCTTTACCAAACGAAGAAATTATAGCGAAGGTTACGAAACAGGTGTTGACGTTATTCCCATCATCACAAGGCTTAGAAGTCACATGGTCATCCGTTGTAAAAATCGGGCAATCTCTATATCGTGAGGGACCTGGTAAAGATCCGTTTAGACCAGATCAGAAGACACCCGTGAAAAATTTCTTCCTTGCAGGATCATACACTAAACAGGACTATATAGATAGCATGGAAGGGGCAACCTTGTCTGGCAGACGAGCTTCTGCCTATATATGCAATGCTGGGGAAGATTTGGTGGAATTGCGAAAGAAGCTAGCATCCCAAGAGGGGTATACGAAAGCAGCTAATACTACTGATGAGCTGAGTCTTGTCTAA

Protein Analysis

570

Amino Acids

62.83

Weight (kDa)

6.3

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 64 - 99 6.3e-06 FAD dependent oxidoreductase
NAD_binding_8 PF13450 67 - 132 1.1e-13 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 72 - 536 1.6e-76 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 262
AccI GTMKAC 1 cut(s) 1667
AccII CGCG 1 cut(s) 722
AcsI RAATTY 3 cut(s) 510, 1079, 1516
AdeI CACNNNGTG 1 cut(s) 1328
AfaI GTAC 1 cut(s) 633
AfiI CCNNNNNNNGG 6 cut(s) 262, 290, 506, 1068, 1069, 1662
AflII CTTAAG 1 cut(s) 827
AgeI ACCGGT 1 cut(s) 22
AgsI TTSAA 4 cut(s) 338, 1087, 1189, 1289
AhlI ACTAGT 1 cut(s) 1102
AjnI CCWGG 4 cut(s) 48, 1036, 1324, 1471
AjuI GAANNNNNNNTTGG 2 cut(s) 1181, 1213
AleI CACNNNNGTG 1 cut(s) 113
Alw21I GWGCWC 3 cut(s) 18, 499, 763
AoxI GGCC 5 cut(s) 179, 253, 281, 856, 964
ApeKI GCWGC 3 cut(s) 1022, 1306, 1676
ApoI RAATTY 3 cut(s) 510, 1079, 1516
AseI ATTAAT 1 cut(s) 386
AsiGI ACCGGT 1 cut(s) 22
Asp700I GAANNNNTTC 1 cut(s) 1517
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 5 cut(s) 66, 75, 179, 857, 1469
AsuHPI GGTGA 2 cut(s) 73, 1340
AsuNHI GCTAGC 1 cut(s) 1648
AvaII GGWCC 3 cut(s) 66, 75, 1469
BamHI GGATCC 1 cut(s) 712
BanII GRGCYC 2 cut(s) 308, 499
BarI GAAGNNNNNNTAC 2 cut(s) 399, 431
BbsI GAAGAC 1 cut(s) 1508
Bbv12I GWGCWC 3 cut(s) 18, 499, 763
BbvI GCAGC 3 cut(s) 1034, 1293, 1688
BccI CCATC 7 cut(s) 92, 608, 869, 938, 1136, 1140, 1408
BciT130I CCWGG 4 cut(s) 50, 1038, 1326, 1473
BciVI GTATCC 1 cut(s) 707
BcuI ACTAGT 1 cut(s) 1102
BfaI CTAG 5 cut(s) 279, 1103, 1169, 1256, 1649
BfrI CTTAAG 1 cut(s) 827
BfuI GTATCC 1 cut(s) 707
BisI GCNGC 3 cut(s) 1023, 1307, 1677
BlsI GCNGC 3 cut(s) 1024, 1308, 1678
Bme1390I CCNGG 4 cut(s) 50, 1038, 1326, 1473
Bme18I GGWCC 3 cut(s) 66, 75, 1469
BmgT120I GGNCC 5 cut(s) 66, 75, 179, 857, 1469
BmiI GGNNCC 5 cut(s) 57, 68, 714, 859, 1470
BmrFI CCNGG 4 cut(s) 50, 1038, 1326, 1473
BmrI ACTGGG 1 cut(s) 1057
BmsI GCATC 7 cut(s) 35, 818, 902, 1000, 1149, 1219, 1661
BmtI GCTAGC 1 cut(s) 1652
BmuI ACTGGG 1 cut(s) 1057
BpiI GAAGAC 1 cut(s) 1508
BpmI CTGGAG 2 cut(s) 822, 1254
BpuEI CTTGAG 1 cut(s) 871
BsaJI CCNNGG 1 cut(s) 804
BsaWI WCCGGW 2 cut(s) 22, 58
BsaXI ACNNNNNCTCC 2 cut(s) 1101, 1131
Bsc4I CCNNNNNNNGG 6 cut(s) 262, 290, 506, 1068, 1069, 1662
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 3 cut(s) 39, 587, 1063
Bse3DI GCAATG 2 cut(s) 1316, 1618
BseBI CCWGG 4 cut(s) 50, 1038, 1326, 1473
BseDI CCNNGG 1 cut(s) 804
BseGI GGATG 5 cut(s) 809, 917, 1151, 1430, 1652
BseLI CCNNNNNNNGG 6 cut(s) 262, 290, 506, 1068, 1069, 1662
BseMI GCAATG 2 cut(s) 1316, 1618
BseMII CTCAG 2 cut(s) 672, 1688
BseNI ACTGG 3 cut(s) 39, 587, 1063
BseRI GAGGAG 1 cut(s) 70
BseXI GCAGC 3 cut(s) 1034, 1293, 1688
BseYI CCCAGC 2 cut(s) 209, 1616
Bsh1236I CGCG 1 cut(s) 722
BshFI GGCC 5 cut(s) 181, 255, 283, 858, 966
BshTI ACCGGT 1 cut(s) 22
BsiHKAI GWGCWC 3 cut(s) 18, 499, 763
BsiSI CCGG 2 cut(s) 23, 59
BslFI GGGAC 4 cut(s) 52, 357, 1045, 1482
BslI CCNNNNNNNGG 6 cut(s) 262, 290, 506, 1068, 1069, 1662
BsmFI GGGAC 4 cut(s) 52, 357, 1045, 1482
BsnI GGCC 5 cut(s) 181, 255, 283, 858, 966
Bsp1286I GDGCHC 4 cut(s) 18, 308, 499, 763
BspANI GGCC 5 cut(s) 181, 255, 283, 858, 966
BspCNI CTCAG 2 cut(s) 671, 1689
BspFNI CGCG 1 cut(s) 722
BspLI GGNNCC 5 cut(s) 57, 68, 714, 859, 1470
BspOI GCTAGC 1 cut(s) 1652
BspTI CTTAAG 1 cut(s) 827
BsrDI GCAATG 2 cut(s) 1316, 1618
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 3 cut(s) 39, 587, 1063
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 804
BssNAI GTATAC 1 cut(s) 1668
Bst1107I GTATAC 1 cut(s) 1668
Bst2UI CCWGG 4 cut(s) 50, 1038, 1326, 1473
Bst4CI ACNGT 5 cut(s) 371, 746, 1000, 1126, 1176
BstAFI CTTAAG 1 cut(s) 827
BstAPI GCANNNNNTGC 1 cut(s) 968
BstC8I GCNNGC 7 cut(s) 216, 220, 824, 964, 1027, 1194, 1650
BstDEI CTNAG 6 cut(s) 658, 798, 978, 1133, 1414, 1697
BstF5I GGATG 5 cut(s) 809, 917, 1151, 1430, 1652
BstFNI CGCG 1 cut(s) 722
BstHHI GCGC 1 cut(s) 404
BstMWI GCNNNNNNNGC 8 cut(s) 215, 563, 823, 968, 1019, 1189, 1256, 1645
BstNI CCWGG 4 cut(s) 50, 1038, 1326, 1473
BstNSI RCATGY 4 cut(s) 226, 826, 1029, 1342
BstSCI CCNGG 4 cut(s) 48, 1036, 1324, 1471
BstUI CGCG 1 cut(s) 722
BstV1I GCAGC 3 cut(s) 1034, 1293, 1688
BstV2I GAAGAC 1 cut(s) 1508
BstX2I RGATCY 3 cut(s) 712, 1165, 1480
BstYI RGATCY 3 cut(s) 712, 1165, 1480
BstZ17I GTATAC 1 cut(s) 1668
BsuI GTATCC 1 cut(s) 707
BsuRI GGCC 5 cut(s) 181, 255, 283, 858, 966
BtgZI GCGATG 2 cut(s) 642, 1044
BtsCI GGATG 5 cut(s) 809, 917, 1151, 1430, 1652
BtsI GCAGTG 1 cut(s) 1301
BtsIMutI CAGTG 5 cut(s) 94, 763, 1070, 1122, 1301
Cac8I GCNNGC 7 cut(s) 216, 220, 824, 964, 1027, 1194, 1650
CfoI GCGC 1 cut(s) 404
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 5 cut(s) 66, 75, 179, 857, 1469
CsiI ACCWGGT 2 cut(s) 1324, 1471
Csp6I GTAC 1 cut(s) 632
CspAI ACCGGT 1 cut(s) 22
CviQI GTAC 1 cut(s) 632
DdeI CTNAG 6 cut(s) 658, 798, 978, 1133, 1414, 1697
DraIII CACNNNGTG 1 cut(s) 1328
Ecl136II GAGCTC 1 cut(s) 497
Eco147I AGGCCT 2 cut(s) 283, 966
Eco24I GRGCYC 2 cut(s) 308, 499
Eco32I GATATC 1 cut(s) 268
Eco47I GGWCC 3 cut(s) 66, 75, 1469
Eco53kI GAGCTC 1 cut(s) 497
EcoICRI GAGCTC 1 cut(s) 497
EcoO109I RGGNCCY 3 cut(s) 66, 75, 1469
EcoRI GAATTC 1 cut(s) 510
EcoRII CCWGG 4 cut(s) 48, 1036, 1324, 1471
EcoRV GATATC 1 cut(s) 268
EcoT22I ATGCAT 1 cut(s) 568
EcoT38I GRGCYC 2 cut(s) 308, 499
FaqI GGGAC 4 cut(s) 52, 357, 1045, 1482
FblI GTMKAC 1 cut(s) 1667
Fnu4HI GCNGC 3 cut(s) 1023, 1307, 1677
FokI GGATG 5 cut(s) 796, 924, 1158, 1417, 1639
FriOI GRGCYC 2 cut(s) 308, 499
Fsp4HI GCNGC 3 cut(s) 1023, 1307, 1677
FspBI CTAG 5 cut(s) 279, 1103, 1169, 1256, 1649
GlaI GCGC 1 cut(s) 403
GluI GCNGC 3 cut(s) 1023, 1307, 1677
GsaI CCCAGC 2 cut(s) 213, 1620
GsuI CTGGAG 2 cut(s) 822, 1254
HaeIII GGCC 5 cut(s) 181, 255, 283, 858, 966
HapII CCGG 2 cut(s) 23, 59
HhaI GCGC 1 cut(s) 404
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HincII GTYRAC 4 cut(s) 228, 448, 1320, 1389
HindII GTYRAC 4 cut(s) 228, 448, 1320, 1389
HindIII AAGCTT 2 cut(s) 652, 1194
HinfI GANTC 5 cut(s) 275, 345, 583, 1041, 1699
HpaI GTTAAC 1 cut(s) 448
HpaII CCGG 2 cut(s) 23, 59
HphI GGTGA 2 cut(s) 73, 1340
Hpy166II GTNNAC 7 cut(s) 228, 448, 847, 1301, 1320, 1389, 1668
Hpy188I TCNGA 6 cut(s) 121, 383, 537, 661, 866, 1500
Hpy8I GTNNAC 7 cut(s) 228, 448, 847, 1301, 1320, 1389, 1668
HpyAV CCTTC 6 cut(s) 418, 885, 1223, 1283, 1363, 1562
HpyCH4III ACNGT 5 cut(s) 371, 746, 1000, 1126, 1176
HpyCH4IV ACGT 4 cut(s) 322, 351, 785, 1391
HpyF10VI GCNNNNNNNGC 8 cut(s) 215, 563, 823, 968, 1019, 1189, 1256, 1645
HpyF3I CTNAG 6 cut(s) 658, 798, 978, 1133, 1414, 1697
HpySE526I ACGT 4 cut(s) 322, 351, 785, 1391
HspAI GCGC 1 cut(s) 402
KspAI GTTAAC 1 cut(s) 448
LmnI GCTCC 7 cut(s) 34, 61, 142, 206, 494, 502, 617
Lsp1109I GCAGC 3 cut(s) 1034, 1293, 1688
LweI GCATC 7 cut(s) 35, 818, 902, 1000, 1149, 1219, 1661
MabI ACCWGGT 2 cut(s) 1324, 1471
MaeI CTAG 5 cut(s) 279, 1103, 1169, 1256, 1649
MaeII ACGT 4 cut(s) 322, 351, 785, 1391
MaeIII GTNAC 6 cut(s) 365, 746, 1120, 1150, 1372, 1420
MboII GAAGA 7 cut(s) 419, 893, 1286, 1367, 1513, 1513, 1634
MfeI CAATTG 2 cut(s) 489, 1184
MflI RGATCY 3 cut(s) 712, 1165, 1480
MhlI GDGCHC 4 cut(s) 18, 308, 499, 763
MluCI AATT 8 cut(s) 462, 489, 510, 1079, 1184, 1359, 1516, 1634
MlyI GAGTC 4 cut(s) 284, 339, 592, 1708
MmeI TCCRAC 1 cut(s) 1087
Mph1103I ATGCAT 1 cut(s) 568
MroXI GAANNNNTTC 1 cut(s) 1517
MseI TTAA 4 cut(s) 35, 386, 447, 828
MslI CAYNNNNRTG 3 cut(s) 113, 338, 1157
MspA1I CMGCKG 1 cut(s) 233
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 2 cut(s) 23, 59
MspR9I CCNGG 4 cut(s) 50, 1038, 1326, 1473
MunI CAATTG 2 cut(s) 489, 1184
MvaI CCWGG 4 cut(s) 50, 1038, 1326, 1473
MvnI CGCG 1 cut(s) 722
MwoI GCNNNNNNNGC 8 cut(s) 215, 563, 823, 968, 1019, 1189, 1256, 1645
NheI GCTAGC 1 cut(s) 1648
NlaIV GGNNCC 5 cut(s) 57, 68, 714, 859, 1470
NmuCI GTSAC 4 cut(s) 746, 1120, 1150, 1420
NsiI ATGCAT 1 cut(s) 568
NspI RCATGY 4 cut(s) 226, 826, 1029, 1342
OliI CACNNNNGTG 1 cut(s) 113
PaeI GCATGC 2 cut(s) 826, 1029
PceI AGGCCT 2 cut(s) 283, 966
PdmI GAANNNNTTC 1 cut(s) 1517
PfeI GAWTC 1 cut(s) 1041
PflMI CCANNNNNTGG 1 cut(s) 262
PinAI ACCGGT 1 cut(s) 22
PkrI GCNGC 3 cut(s) 1024, 1308, 1678
PleI GAGTC 4 cut(s) 283, 339, 591, 1707
PpsI GAGTC 4 cut(s) 283, 339, 591, 1707
PpuMI RGGWCCY 3 cut(s) 66, 75, 1469
PshBI ATTAAT 1 cut(s) 386
Psp124BI GAGCTC 1 cut(s) 499
Psp5II RGGWCCY 3 cut(s) 66, 75, 1469
Psp6I CCWGG 4 cut(s) 48, 1036, 1324, 1471
PspFI CCCAGC 2 cut(s) 209, 1616
PspGI CCWGG 4 cut(s) 48, 1036, 1324, 1471
PspN4I GGNNCC 5 cut(s) 57, 68, 714, 859, 1470
PspPI GGNCC 5 cut(s) 66, 75, 179, 857, 1469
PspPPI RGGWCCY 3 cut(s) 66, 75, 1469
PsuI RGATCY 3 cut(s) 712, 1165, 1480
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 1 cut(s) 633
RsaNI GTAC 1 cut(s) 632
RseI CAYNNNNRTG 3 cut(s) 113, 338, 1157
SacI GAGCTC 1 cut(s) 499
SaqAI TTAA 4 cut(s) 35, 386, 447, 828
SatI GCNGC 3 cut(s) 1023, 1307, 1677
Sau96I GGNCC 5 cut(s) 66, 75, 179, 857, 1469
SchI GAGTC 4 cut(s) 284, 339, 592, 1708
ScrFI CCNGG 4 cut(s) 50, 1038, 1326, 1473
SduI GDGCHC 4 cut(s) 18, 308, 499, 763
SexAI ACCWGGT 2 cut(s) 1324, 1471
SfaNI GCATC 7 cut(s) 35, 818, 902, 1000, 1149, 1219, 1661
SinI GGWCC 3 cut(s) 66, 75, 1469
SmiMI CAYNNNNRTG 3 cut(s) 113, 338, 1157
SmlI CTYRAG 2 cut(s) 827, 850
SmoI CTYRAG 2 cut(s) 827, 850
SpeI ACTAGT 1 cut(s) 1102
SphI GCATGC 2 cut(s) 826, 1029
Sse9I AATT 8 cut(s) 462, 489, 510, 1079, 1184, 1359, 1516, 1634
SseBI AGGCCT 2 cut(s) 283, 966
SspI AATATT 1 cut(s) 1093
SspMI CTAG 5 cut(s) 279, 1103, 1169, 1256, 1649
SstI GAGCTC 1 cut(s) 499
StuI AGGCCT 2 cut(s) 283, 966
StyD4I CCNGG 4 cut(s) 48, 1036, 1324, 1471
TaaI ACNGT 5 cut(s) 371, 746, 1000, 1126, 1176
TaiI ACGT 4 cut(s) 325, 354, 788, 1394
TaqI TCGA 3 cut(s) 43, 94, 175
TaqII GACCGA 1 cut(s) 818
TasI AATT 8 cut(s) 462, 489, 510, 1079, 1184, 1359, 1516, 1634
TfiI GAWTC 1 cut(s) 1041
Tru1I TTAA 4 cut(s) 35, 386, 447, 828
Tru9I TTAA 4 cut(s) 35, 386, 447, 828
TscAI CASTG 5 cut(s) 94, 763, 1070, 1129, 1308
TseFI GTSAC 4 cut(s) 746, 1120, 1150, 1420
TseI GCWGC 3 cut(s) 1022, 1306, 1676
Tsp45I GTSAC 4 cut(s) 746, 1120, 1150, 1420
TspDTI ATGAA 7 cut(s) 277, 404, 658, 727, 887, 1113, 1230
TspGWI ACGGA 3 cut(s) 1047, 1423, 1473
TspRI CASTG 5 cut(s) 94, 763, 1070, 1129, 1308
Van91I CCANNNNNTGG 1 cut(s) 262
Vha464I CTTAAG 1 cut(s) 827
VpaK11BI GGWCC 3 cut(s) 66, 75, 1469
VspI ATTAAT 1 cut(s) 386
XapI RAATTY 3 cut(s) 510, 1079, 1516
XbaI TCTAGA 1 cut(s) 1168
XceI RCATGY 4 cut(s) 226, 826, 1029, 1342
XcmI CCANNNNNNNNNTGG 3 cut(s) 46, 356, 565
XmiI GTMKAC 1 cut(s) 1667
XmnI GAANNNNTTC 1 cut(s) 1517
XspI CTAG 5 cut(s) 279, 1103, 1169, 1256, 1649
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.