Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007747

Physical Location & Seq

Genomic Coordinates Forward (+)

75053601 .. 75054792

Gene Structure 1192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0637400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTTTTCCCTTGCTCATCAGCTAGCTACTGCTGTTACTAACGATGCTGGTCAACAAGTAGAACCCTATGTCATCAGTATTGCTTTGGCTTTTGACCCTTCCAAATCACCTCATTACAAGGCGGTCTGCCTACGGACCAATGACGGAACAAAATATGGCCGGCACTTCCACATACTGATATATTCGTCTGAGACTCGAAGTTGGAAGCTTCTTGATTCTTCTTTCTCTAGGGGATTTCACATCCTCTACAAACGCGTTGTTTACTGCAATGGAGCAATTCACTGGTTAGGCATGTATAGTGGGTTGTCTTACTTTCGCGTGGATGAAGAGCGTATTGGAGTTGTAGATCCTCCTCCTCGCTGTAAAGAGAAGAACTTGGACAAGATTATATTTAGATATTTTCAGGAGTCTGGTGACAGGCGCCATTTGCATCTTATTGATATTTATGTGCCTGATATCTCTCAATTTGAAGTTTTGGAGATGGGAAAAGACTACTCTGGCTGGTTTGTCAAGTACCTTGTTGACCTTGATCCCATATGCACTGCTTACCCCTGGTTTCGATTGGATCGATTTATCATTCTCTTTCTAGCTCAAGACGAAATTGAAGGAGAGGAATGTTCATCTCTGTTGCTGCATACAGCTGGCAAAGTCATCTCTTATAATCTTAAGAGTAAGACCTTCAAATCTTTTGAGTTAGCTCCCAAGGCCGGAGTTGATGATTGTCTCTTACGAGTTGGTGAAAAAAATTATCGGTACGTGGAGACATTGGCTTGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009509 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016491 GO:0016627 GO:0016635 GO:0031967 GO:0031975 GO:0042214 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046246 GO:0052886 GO:0052889 GO:0055114 GO:0071704 GO:1901175 GO:1901177 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

259

Amino Acids

29.91

Weight (kDa)

6.75

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	26 - 120	3.2e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04870 AT3G04870 AT3G04870 AT3G04870
fragaria_vesca	FvH4_6g03420 FvH4_6g03420
malus_domestica	MD04G1220900.v1.1 MD12G1237300.v1.1
prunus_persica	Prupe.6G340000_v2.0.a1 Prupe.6G340000_v2.0.a1
pyrus_communis	pycom04g19540 pycom12g21820
rosa_chinensis	RchiOBHm_Chr3g0451921
rosa_laevigata	RLG00000025638
rosa_multiflora	Rmu_sc0002901.1_g000003
rosa_roxburghii	Rroxscaffold_164G00436190 Rroxscaffold_6G00429090
rosa_rugosa	Rorug02G0637300 Rorug02G0637400
rosa_samantha	Rh3AG039100 Rh3BG040400 Rh3CG038900 Rh3DG039600
rosa_wichuraiana	Rw3G002920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	660
AccB1I	GGYRCC	1 cut(s)	420
AccII	CGCG	2 cut(s)	255, 318
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	3 cut(s)	341, 524, 573
AcoI	YGGCCR	1 cut(s)	157
AcyI	GRCGYC	1 cut(s)	421
AfaI	GTAC	2 cut(s)	515, 755
AfiI	CCNNNNNNNGG	1 cut(s)	707
AflII	CTTAAG	1 cut(s)	665
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	470, 605, 682
AjnI	CCWGG	1 cut(s)	551
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AluBI	AGCT	6 cut(s)	22, 26, 208, 590, 641, 698
AluI	AGCT	6 cut(s)	22, 26, 208, 590, 641, 698
Alw26I	GTCTC	3 cut(s)	185, 728, 755
AlwI	GGATC	3 cut(s)	341, 524, 573
AoxI	GGCC	2 cut(s)	157, 705
ApeKI	GCWGC	1 cut(s)	631
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	3 cut(s)	99, 425, 749
AsuNHI	GCTAGC	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	618
BccI	CCATC	1 cut(s)	475
BciT130I	CCWGG	1 cut(s)	553
BcoDI	GTCTC	3 cut(s)	185, 728, 755
BfaI	CTAG	3 cut(s)	23, 228, 587
BfoI	RGCGCY	1 cut(s)	424
BfrI	CTTAAG	1 cut(s)	665
BisI	GCNGC	1 cut(s)	632
BlsI	GCNGC	1 cut(s)	633
Bme1390I	CCNGG	1 cut(s)	553
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	422
BmrFI	CCNGG	1 cut(s)	553
BmsI	GCATC	2 cut(s)	34, 439
BmtI	GCTAGC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	576
Bsa29I	ATCGAT	1 cut(s)	568
BsaAI	YACGTR	1 cut(s)	757
BsaHI	GRCGYC	1 cut(s)	421
BsaJI	CCNNGG	2 cut(s)	551, 702
Bsc4I	CCNNNNNNNGG	1 cut(s)	707
Bse118I	RCCGGY	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	553
BseCI	ATCGAT	1 cut(s)	568
BseDI	CCNNGG	2 cut(s)	551, 702
BseGI	GGATG	2 cut(s)	240, 328
BseLI	CCNNNNNNNGG	1 cut(s)	707
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	2 cut(s)	342, 345
BseXI	GCAGC	1 cut(s)	618
Bsh1236I	CGCG	2 cut(s)	255, 318
BshFI	GGCC	2 cut(s)	159, 707
BshNI	GGYRCC	1 cut(s)	420
BshVI	ATCGAT	1 cut(s)	568
BsiSI	CCGG	2 cut(s)	160, 708
BslI	CCNNNNNNNGG	1 cut(s)	707
BsmAI	GTCTC	3 cut(s)	185, 728, 755
BsnI	GGCC	2 cut(s)	159, 707
Bsp143I	GATC	3 cut(s)	346, 529, 565
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	2 cut(s)	159, 707
BspCNI	CTCAG	1 cut(s)	181
BspDI	ATCGAT	1 cut(s)	568
BspFNI	CGCG	2 cut(s)	255, 318
BspLI	GGNNCC	1 cut(s)	422
BspOI	GCTAGC	1 cut(s)	26
BspPI	GGATC	3 cut(s)	341, 524, 573
BspQI	GCTCTTC	1 cut(s)	321
BspT107I	GGYRCC	1 cut(s)	420
BspTI	CTTAAG	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	551, 702
BssMI	GATC	3 cut(s)	346, 529, 565
BssNI	GRCGYC	1 cut(s)	421
BssT1I	CCWWGG	1 cut(s)	702
Bst2UI	CCWGG	1 cut(s)	553
Bst6I	CTCTTC	1 cut(s)	321
BstACI	GRCGYC	1 cut(s)	421
BstAFI	CTTAAG	1 cut(s)	665
BstBAI	YACGTR	1 cut(s)	757
BstC8I	GCNNGC	3 cut(s)	24, 161, 643
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	240, 328
BstFNI	CGCG	2 cut(s)	255, 318
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	3 cut(s)	349, 532, 568
BstMAI	GTCTC	3 cut(s)	185, 728, 755
BstMBI	GATC	3 cut(s)	346, 529, 565
BstMWI	GCNNNNNNNGC	2 cut(s)	427, 704
BstNI	CCWGG	1 cut(s)	553
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	551
BstUI	CGCG	2 cut(s)	255, 318
BstV1I	GCAGC	1 cut(s)	618
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	568
BsuRI	GGCC	2 cut(s)	159, 707
BsuTUI	ATCGAT	1 cut(s)	568
BtsCI	GGATG	2 cut(s)	240, 328
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	2 cut(s)	280, 540
Cac8I	GCNNGC	3 cut(s)	24, 161, 643
CfoI	GCGC	1 cut(s)	423
Cfr10I	RCCGGY	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	135
ClaI	ATCGAT	1 cut(s)	568
Csp6I	GTAC	2 cut(s)	514, 754
CviAII	CATG	1 cut(s)	292
CviQI	GTAC	2 cut(s)	514, 754
DdeI	CTNAG	1 cut(s)	189
DinI	GGCGCC	1 cut(s)	422
DpnI	GATC	3 cut(s)	348, 531, 567
DpnII	GATC	3 cut(s)	346, 529, 565
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	702
Eco32I	GATATC	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	551
EcoRV	GATATC	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	702
EgeI	GGCGCC	1 cut(s)	422
EheI	GGCGCC	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	702
FaeI	CATG	1 cut(s)	295
FatI	CATG	1 cut(s)	291
FauNDI	CATATG	1 cut(s)	536
Fnu4HI	GCNGC	1 cut(s)	632
FokI	GGATG	2 cut(s)	227, 335
Fsp4HI	GCNGC	1 cut(s)	632
FspBI	CTAG	3 cut(s)	23, 228, 587
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	1 cut(s)	632
HaeII	RGCGCY	1 cut(s)	424
HaeIII	GGCC	2 cut(s)	159, 707
HapII	CCGG	2 cut(s)	160, 708
HhaI	GCGC	1 cut(s)	423
Hin1I	GRCGYC	1 cut(s)	421
Hin1II	CATG	1 cut(s)	295
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HincII	GTYRAC	2 cut(s)	53, 523
HindII	GTYRAC	2 cut(s)	53, 523
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	3 cut(s)	193, 215, 407
HpaII	CCGG	2 cut(s)	160, 708
HphI	GGTGA	3 cut(s)	99, 425, 749
Hpy166II	GTNNAC	3 cut(s)	53, 262, 523
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	3 cut(s)	212, 404, 593
Hpy8I	GTNNAC	3 cut(s)	53, 262, 523
HpyAV	CCTTC	3 cut(s)	108, 599, 688
HpyCH4IV	ACGT	1 cut(s)	756
HpyCH4V	TGCA	4 cut(s)	267, 430, 540, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	427, 704
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	756
Hsp92I	GRCGYC	1 cut(s)	421
Hsp92II	CATG	1 cut(s)	295
HspAI	GCGC	1 cut(s)	421
KasI	GGCGCC	1 cut(s)	420
KroI	GCCGGC	1 cut(s)	159
KroNI	GCCGGC	1 cut(s)	161
Kzo9I	GATC	3 cut(s)	346, 529, 565
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	2 cut(s)	272, 703
Lsp1109I	GCAGC	1 cut(s)	618
LweI	GCATC	2 cut(s)	34, 439
MaeI	CTAG	3 cut(s)	23, 228, 587
MaeII	ACGT	1 cut(s)	756
MaeIII	GTNAC	2 cut(s)	34, 413
MalI	GATC	3 cut(s)	348, 531, 567
MboI	GATC	3 cut(s)	346, 529, 565
MboII	GAAGA	3 cut(s)	210, 338, 382
MflI	RGATCY	1 cut(s)	346
MluCI	AATT	4 cut(s)	276, 464, 600, 745
MluI	ACGCGT	1 cut(s)	253
Mly113I	GGCGCC	1 cut(s)	421
MlyI	GAGTC	2 cut(s)	187, 416
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	6 cut(s)	120, 254, 360, 363, 366, 604
MroNI	GCCGGC	1 cut(s)	159
MseI	TTAA	1 cut(s)	666
MspA1I	CMGCKG	1 cut(s)	641
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	2 cut(s)	160, 708
MspR9I	CCNGG	1 cut(s)	553
MvaI	CCWGG	1 cut(s)	553
MvnI	CGCG	2 cut(s)	255, 318
MwoI	GCNNNNNNNGC	2 cut(s)	427, 704
NaeI	GCCGGC	1 cut(s)	161
NarI	GGCGCC	1 cut(s)	421
NdeI	CATATG	1 cut(s)	536
NdeII	GATC	3 cut(s)	346, 529, 565
NgoMIV	GCCGGC	1 cut(s)	159
NheI	GCTAGC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	1 cut(s)	422
NmuCI	GTSAC	1 cut(s)	413
NspI	RCATGY	1 cut(s)	295
PciSI	GCTCTTC	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	565
PdiI	GCCGGC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	633
PleI	GAGTC	2 cut(s)	187, 415
PluTI	GGCGCC	1 cut(s)	424
PpsI	GAGTC	2 cut(s)	187, 415
Ppu21I	YACGTR	1 cut(s)	757
PsiI	TTATAA	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	551
PspGI	CCWGG	1 cut(s)	551
PspN4I	GGNNCC	1 cut(s)	422
PspPI	GGNCC	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	641
RsaI	GTAC	2 cut(s)	515, 755
RsaNI	GTAC	2 cut(s)	514, 754
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	666
SatI	GCNGC	1 cut(s)	632
Sau3AI	GATC	3 cut(s)	346, 529, 565
Sau96I	GGNCC	1 cut(s)	135
SchI	GAGTC	2 cut(s)	187, 416
ScrFI	CCNGG	1 cut(s)	553
SfaNI	GCATC	2 cut(s)	34, 439
SfoI	GGCGCC	1 cut(s)	422
SinI	GGWCC	1 cut(s)	135
SmlI	CTYRAG	2 cut(s)	591, 665
SmoI	CTYRAG	2 cut(s)	591, 665
Sse9I	AATT	4 cut(s)	276, 464, 600, 745
SsiI	CCGC	1 cut(s)	122
SspDI	GGCGCC	1 cut(s)	420
SspMI	CTAG	3 cut(s)	23, 228, 587
StyD4I	CCNGG	1 cut(s)	551
StyI	CCWWGG	1 cut(s)	702
TaiI	ACGT	1 cut(s)	759
TaqI	TCGA	3 cut(s)	196, 559, 568
TasI	AATT	4 cut(s)	276, 464, 600, 745
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TscAI	CASTG	2 cut(s)	287, 547
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	1 cut(s)	631
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	2 cut(s)	339, 609
TspGWI	ACGGA	2 cut(s)	148, 159
TspRI	CASTG	2 cut(s)	287, 547
Vha464I	CTTAAG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	135
XceI	RCATGY	1 cut(s)	295
XspI	CTAG	3 cut(s)	23, 228, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.