FvH4_6g05281

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018451
Physical Location & Seq
Reverse (-)
2974491 .. 2974970
480 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05281.t1

Sequence Viewer

Length: 480 bp
ATGGATGGCATAGAACAGCATCTTCAATCTCTAGGCATTTGCCAAAGGCTGTACAACTTCATAATGAGAAGGCTAGCCTCACATGCCTTCAAGAGTGTCACTTTAGGCCCTCCAATGATTCAAGGCTTACCCTCAATTCCTGAGGATGCTGTTGTTAGTGAAGCTGGAACTAAATGCAATGGAAAAGTACACCCGGATCCCCTCTCTTGTACAGACGTTATTACAGAGGAAACAGAAGCTCCAGGACCATCAATCGCTTCTCGAGCAAAACCTCCAAGGAAAACTGTTAGCATAAATGATGAAGTCGAGGATATAGAGAAAACTCTGAAGCTGAGAAGAAGAAAGAGCAAATCTTTCGAAAGGTGGAACTCATTGGAGCCACCAAACTATGAGCAAATCCCTCAGAGATCATCGATTCTGAAGGTGGGTTCTGATTTGAGGAAGAAGATGGCTACATTTGTGAATCACAACTACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.86

Weight (kDa)

9.03

Isoelectric Point (pI)

63.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g05281
prunus_persica Prupe.6G330800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454021
rosa_laevigata RLG00000025489
rosa_roxburghii Rroxscaffold_6G00430820
rosa_rugosa Rorug02G0652400
rosa_samantha Rh3AG055000 Rh3BG056600 Rh3CG055800 Rh3DG057100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 191, 204
AcuI CTGAAG 2 cut(s) 347, 440
AfaI GTAC 3 cut(s) 53, 189, 211
AgsI TTSAA 3 cut(s) 26, 91, 122
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 3 cut(s) 164, 239, 331
AluI AGCT 3 cut(s) 164, 239, 331
AlwI GGATC 2 cut(s) 191, 204
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 1 cut(s) 106
AspS9I GGNCC 2 cut(s) 107, 245
AsuC2I CCSGG 1 cut(s) 194
AsuII TTCGAA 1 cut(s) 357
AsuNHI GCTAGC 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 245
AxyI CCTNAGG 1 cut(s) 141
BamHI GGATCC 1 cut(s) 196
BccI CCATC 2 cut(s) 256, 442
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BciT130I CCWGG 1 cut(s) 243
BcnI CCSGG 1 cut(s) 194
BfaI CTAG 2 cut(s) 32, 74
Bme1390I CCNGG 2 cut(s) 194, 243
Bme18I GGWCC 1 cut(s) 245
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 2 cut(s) 107, 245
BmiI GGNNCC 2 cut(s) 198, 378
BmrFI CCNGG 2 cut(s) 194, 243
BmsI GCATC 2 cut(s) 28, 136
BmtI GCTAGC 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 225
Bpu14I TTCGAA 1 cut(s) 357
BpuMI CCSGG 1 cut(s) 194
Bsa29I ATCGAT 1 cut(s) 413
BsaJI CCNNGG 1 cut(s) 275
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bse21I CCTNAGG 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 243
BseCI ATCGAT 1 cut(s) 413
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 2 cut(s) 10, 151
BseMI GCAATG 1 cut(s) 184
BseMII CTCAG 3 cut(s) 132, 323, 416
BshFI GGCC 1 cut(s) 108
BshVI ATCGAT 1 cut(s) 413
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 194
BsnI GGCC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 261
Bsp119I TTCGAA 1 cut(s) 357
Bsp1407I TGTACA 2 cut(s) 51, 209
Bsp143I GATC 2 cut(s) 196, 407
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 3 cut(s) 133, 324, 415
BspDI ATCGAT 1 cut(s) 413
BspLI GGNNCC 2 cut(s) 198, 378
BspOI GCTAGC 1 cut(s) 77
BspPI GGATC 2 cut(s) 191, 204
BspT104I TTCGAA 1 cut(s) 357
BsrDI GCAATG 1 cut(s) 184
BsrGI TGTACA 2 cut(s) 51, 209
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 2 cut(s) 196, 407
BssT1I CCWWGG 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 286
BstAUI TGTACA 2 cut(s) 51, 209
BstBI TTCGAA 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 3 cut(s) 141, 332, 402
BstF5I GGATG 2 cut(s) 10, 151
BstKTI GATC 2 cut(s) 199, 410
BstMBI GATC 2 cut(s) 196, 407
BstMWI GCNNNNNNNGC 2 cut(s) 83, 263
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 2 cut(s) 192, 241
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
Bsu15I ATCGAT 1 cut(s) 413
Bsu36I CCTNAGG 1 cut(s) 141
BsuRI GGCC 1 cut(s) 108
BsuTUI ATCGAT 1 cut(s) 413
BtsCI GGATG 2 cut(s) 10, 151
Cac8I GCNNGC 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 107, 245
ClaI ATCGAT 1 cut(s) 413
Csp6I GTAC 3 cut(s) 52, 188, 210
CviAII CATG 1 cut(s) 83
CviQI GTAC 3 cut(s) 52, 188, 210
DdeI CTNAG 3 cut(s) 141, 332, 402
DpnI GATC 2 cut(s) 198, 409
DpnII GATC 2 cut(s) 196, 407
Eco130I CCWWGG 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 245
Eco57I CTGAAG 2 cut(s) 347, 440
Eco81I CCTNAGG 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 275
FaeI CATG 1 cut(s) 86
FaiI YATR 6 cut(s) 11, 62, 84, 293, 314, 390
FatI CATG 1 cut(s) 82
FokI GGATG 2 cut(s) 17, 158
FspBI CTAG 2 cut(s) 32, 74
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 194
Hin1II CATG 1 cut(s) 86
HinfI GANTC 3 cut(s) 118, 415, 463
HpaII CCGG 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 4 cut(s) 327, 405, 420, 433
Hpy188III TCNNGA 3 cut(s) 91, 140, 261
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 3 cut(s) 63, 97, 415
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 263
HpyF3I CTNAG 3 cut(s) 141, 332, 402
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 1 cut(s) 86
Kzo9I GATC 2 cut(s) 196, 407
LmnI GCTCC 2 cut(s) 244, 376
LpnPI CCDG 5 cut(s) 150, 153, 207, 228, 255
LweI GCATC 2 cut(s) 28, 136
MaeI CTAG 2 cut(s) 32, 74
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 97
MalI GATC 2 cut(s) 198, 409
MboI GATC 2 cut(s) 196, 407
MboII GAAGA 5 cut(s) 14, 348, 351, 454, 457
MflI RGATCY 1 cut(s) 196
MluCI AATT 1 cut(s) 135
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 2 cut(s) 194, 243
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 2 cut(s) 83, 263
NciI CCSGG 1 cut(s) 194
NdeII GATC 2 cut(s) 196, 407
NheI GCTAGC 1 cut(s) 73
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 2 cut(s) 198, 378
NmuCI GTSAC 1 cut(s) 97
NspI RCATGY 1 cut(s) 86
NspV TTCGAA 1 cut(s) 357
PaeR7I CTCGAG 1 cut(s) 261
PfeI GAWTC 3 cut(s) 118, 415, 463
PfoI TCCNGGA 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 198, 378
PspPI GGNCC 2 cut(s) 107, 245
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 3 cut(s) 53, 189, 211
RsaNI GTAC 3 cut(s) 52, 188, 210
Sau3AI GATC 2 cut(s) 196, 407
Sau96I GGNCC 2 cut(s) 107, 245
ScrFI CCNGG 2 cut(s) 194, 243
SetI ASST 7 cut(s) 166, 219, 241, 274, 333, 365, 426
SfaNI GCATC 2 cut(s) 28, 136
Sfr274I CTCGAG 1 cut(s) 261
SfuI TTCGAA 1 cut(s) 357
SinI GGWCC 1 cut(s) 245
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
Sse9I AATT 1 cut(s) 135
SspMI CTAG 2 cut(s) 32, 74
StyD4I CCNGG 2 cut(s) 192, 241
StyI CCWWGG 1 cut(s) 275
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 1 cut(s) 219
TaqI TCGA 4 cut(s) 262, 306, 357, 413
TasI AATT 1 cut(s) 135
TatI WGTACW 3 cut(s) 51, 187, 209
TfiI GAWTC 3 cut(s) 118, 415, 463
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 2 cut(s) 49, 315
VpaK11BI GGWCC 1 cut(s) 245
XceI RCATGY 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 261
XspI CTAG 2 cut(s) 32, 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.