RLG00000025489

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
46048615 .. 46049097
483 bp
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UTR
Exon/CDS
Intron
RLM00000025489

Sequence Viewer

Length: 483 bp
ATGGATGGCAGAGGACAGCATCTTCAATCTCTAGGCATTTGCCAAAGGCTCTACAACTTCATCATGAGAGGTCTAGCCTCACAAGCCTTCAAGAGTGTGAATTTAGGCCCTCCAATGATTCAAGGCTTACCCTCAATTCCTGAGGATGCTGTTCTTAATGAAGCTGGAACTAAATGCAATGGCAAAGTACACCCGAACCCCCAGTCTTCTTGTCCAGATGATATTAAAGAGGAAATAGAAGCTCAAATACCATCAATTGCTTCTCAAGCGAAACCTCCAAGGAAAACAGTTAGCATAAAACATGAAGTCGAGGATATGGAGAAAACTCTGAAGTTGAGAAGAAAAAAGAGCAAATCATATGAAAAGTCGAATTCGTTAGAGCCACCAAGCAATGAGCAAATCCCTCAGAGATCATCAATTCTGAAGGTGGGTTCTGATTTGAGCAAGAAGATGGCTACATTTGTGAATCATAACTACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.75

Weight (kDa)

9.28

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g05281
prunus_persica Prupe.6G330800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454021
rosa_laevigata RLG00000025489
rosa_roxburghii Rroxscaffold_6G00430820
rosa_rugosa Rorug02G0652400
rosa_samantha Rh3AG055000 Rh3BG056600 Rh3CG055800 Rh3DG057100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 100, 370
AcuI CTGAAG 2 cut(s) 350, 443
AfaI GTAC 1 cut(s) 189
AgsI TTSAA 3 cut(s) 26, 91, 122
AluBI AGCT 2 cut(s) 164, 242
AluI AGCT 2 cut(s) 164, 242
AoxI GGCC 1 cut(s) 106
ApoI RAATTY 2 cut(s) 100, 370
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
AspS9I GGNCC 1 cut(s) 107
AxyI CCTNAGG 1 cut(s) 141
BarI GAAGNNNNNNTAC 2 cut(s) 231, 263
BbsI GAAGAC 1 cut(s) 198
BccI CCATC 2 cut(s) 259, 445
BfaI CTAG 2 cut(s) 32, 74
BmgT120I GGNCC 1 cut(s) 107
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 2 cut(s) 28, 136
BmuI ACTGGG 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 202
Bse21I CCTNAGG 1 cut(s) 141
Bse3DI GCAATG 2 cut(s) 184, 397
BseDI CCNNGG 1 cut(s) 278
BseGI GGATG 2 cut(s) 10, 151
BseMI GCAATG 2 cut(s) 184, 397
BseMII CTCAG 2 cut(s) 132, 419
BseNI ACTGG 1 cut(s) 202
BshFI GGCC 1 cut(s) 108
BsnI GGCC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 410
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 2 cut(s) 133, 418
BspHI TCATGA 1 cut(s) 63
BsrDI GCAATG 2 cut(s) 184, 397
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 278
BssMI GATC 1 cut(s) 410
BssT1I CCWWGG 1 cut(s) 278
Bst4CI ACNGT 1 cut(s) 289
BstDEI CTNAG 2 cut(s) 141, 405
BstF5I GGATG 2 cut(s) 10, 151
BstKTI GATC 1 cut(s) 413
BstMBI GATC 1 cut(s) 410
BstMWI GCNNNNNNNGC 2 cut(s) 83, 266
BstV2I GAAGAC 1 cut(s) 198
Bsu36I CCTNAGG 1 cut(s) 141
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 2 cut(s) 10, 151
CciI TCATGA 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 188
CviAII CATG 2 cut(s) 64, 302
CviJI RGCY 9 cut(s) 49, 77, 86, 108, 126, 164, 242, 382, 455
CviKI_1 RGCY 9 cut(s) 49, 77, 86, 108, 126, 164, 242, 382, 455
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 2 cut(s) 141, 405
DpnI GATC 1 cut(s) 412
DpnII GATC 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 278
Eco57I CTGAAG 2 cut(s) 350, 443
Eco81I CCTNAGG 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 278
FaeI CATG 2 cut(s) 67, 305
FaiI YATR 7 cut(s) 65, 296, 303, 317, 358, 360, 471
FatI CATG 2 cut(s) 63, 301
FauNDI CATATG 1 cut(s) 358
FokI GGATG 2 cut(s) 17, 158
FspBI CTAG 2 cut(s) 32, 74
HaeIII GGCC 1 cut(s) 108
Hin1II CATG 2 cut(s) 67, 305
HinfI GANTC 2 cut(s) 118, 466
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 4 cut(s) 330, 408, 423, 436
Hpy188III TCNNGA 4 cut(s) 64, 91, 140, 215
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 2 cut(s) 97, 418
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 266
HpyF3I CTNAG 2 cut(s) 141, 405
Hsp92II CATG 2 cut(s) 67, 305
Kzo9I GATC 1 cut(s) 410
LpnPI CCDG 4 cut(s) 150, 153, 215, 228
LweI GCATC 2 cut(s) 28, 136
MaeI CTAG 2 cut(s) 32, 74
MalI GATC 1 cut(s) 412
MboI GATC 1 cut(s) 410
MboII GAAGA 4 cut(s) 14, 198, 351, 460
MfeI CAATTG 1 cut(s) 255
MluCI AATT 5 cut(s) 100, 135, 255, 370, 417
MseI TTAA 2 cut(s) 156, 225
MunI CAATTG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 83, 266
NdeI CATATG 1 cut(s) 358
NdeII GATC 1 cut(s) 410
NlaIII CATG 2 cut(s) 67, 305
PagI TCATGA 1 cut(s) 63
PfeI GAWTC 2 cut(s) 118, 466
PspPI GGNCC 1 cut(s) 107
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 156, 225
Sau3AI GATC 1 cut(s) 410
Sau96I GGNCC 1 cut(s) 107
SetI ASST 5 cut(s) 73, 166, 244, 277, 429
SfaNI GCATC 2 cut(s) 28, 136
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
Sse9I AATT 5 cut(s) 100, 135, 255, 370, 417
SspMI CTAG 2 cut(s) 32, 74
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 1 cut(s) 289
TaqI TCGA 2 cut(s) 309, 368
TasI AATT 5 cut(s) 100, 135, 255, 370, 417
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 2 cut(s) 118, 466
Tru1I TTAA 2 cut(s) 156, 225
Tru9I TTAA 2 cut(s) 156, 225
TspDTI ATGAA 4 cut(s) 49, 174, 318, 375
XapI RAATTY 2 cut(s) 100, 370
XspI CTAG 2 cut(s) 32, 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.