Rorug02G0652400

39S ribosomal protein L45

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013393
Physical Location & Seq
Forward (+)
75997197 .. 75999425
2229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0652400.1

Sequence Viewer

Length: 1266 bp
ATGGAAGAGAGTTTCAGCGTTCGAGTAGGCAAAACGTTCGATATTCTAGCTGGCTCATCACCATCAGCGACAGCGAGGGCTCCGTCTTTCTCGCTGTGGTCCCTAACAGGTGAGGAAATCGAGAAGAGAGAATGGAACAGGGACAAGGGGAGCCCCGAACCCCAACCCCGACCCTGCAACCCAAATTCAAATTCTAAGGATGATTTCTTCGGTAACGAGCTGGAGAAGGACCTTCTGGACCTTGACGACGATGACGTGGAAGAAGAAGAAGACGAGGTGGTGGAGGAGCAATCTGCTAAGCCGAAGCCGAAGCCGGATGATTATAACGAGGAGCAGTGGCAAATTAAAACCTGCATCGGCTTGGACTGTACTCTCGACCACGAGGAAGAGGAAGATGAATTTGACAAAGTGGCTGTTGGCAAGGGAAATGCTGGAGACCGCTTTTATATGAAGGATGTAAATGACTATCCGATAGACATTGATTCTCAATACGAGGTTCCCAATTCATTGAACGATTTCACTAGAGACCCTCGCGCCAATCACCTAGCAGCTAAGATTAGACTCCAACTGGATGCAGAAGCAGCTCGAAAAATTGACTCCTTGCGGGTTTCTGGGAACACTGCACCATCCGGTGCTATAGCTGATGAATTCGTCCCGTCTGAAGATGCTATCAACCTGAAATCAATTTTGAAGAGGAAAAATGATGAGCAGTTAGGCTCATCTAAATCACAAAAGCGTGTTCGGTTTGACCCTGAGTGTAAAGATGATTGCGATGAAGAGCCTGATGGATCCAAAGATATACCTGTGAAAAGCCTTTCAGGTGAAGATCACGTGTCTGCAGTTCCAGATTACATACGGAATCCATCAAGATATACACATTATACATTTGATTCATCAACTGACATGGATGAGGAAGCTAACAGGCAAGCCTATATGGATTTCCGTAATCTTTTGGGGATGTCAAATACTACGGAAGCAGAAGCACCCAGGGATTTTTCAAAACCGATCATATTCACACCAAAAAAGAAATCAACTGATGCGACAATGCTAGAAATTGATGGGGAGTCGGAGAGACCAGTAGGTGCTAGTAAGGAATCTGCGCCTTACAGAGTCGTGCCAATTGCTATTGCAGCCAGGGATCACGAAGACAGTGATGTGTGTGCAATGGATGAAGATGAACCAGATATAGAAACCAGTGGAAGAACAAGTTCACAGAGGATTGGCCGCCAGTTTCGTACAAGAACCAGTTTAGAGTTGGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim44

Protein Analysis

421

Amino Acids

47.35

Weight (kDa)

4.45

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TSSC4 PF15264 272 - 317 1.8e-06 Tumour suppressing sub-chromosomal transferable candidate 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27395 AT5G27395
fragaria_vesca FvH4_6g05290
malus_domestica MD04G1209800.v1.1 MD12G1224400.v1.1
prunus_persica Prupe.6G330700_v2.0.a1 Prupe.6G330700_v2.0.a1
pyrus_communis pycom04g18600 pycom12g21000
rosa_chinensis RchiOBHm_Chr3g0454031
rosa_laevigata RLG00000025488
rosa_multiflora Rmu_sc0019265.1_g000003 Rmu_sc0020385.1_g000006
rosa_rugosa Rorug02G0652400
rosa_samantha Rh3AG055100 Rh3BG056700 Rh3DG057200
rosa_wichuraiana Rw3G004230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
Acc36I ACCTGC 1 cut(s) 359
AccII CGCG 1 cut(s) 534
AciI CCGC 3 cut(s) 439, 604, 1225
AclI AACGTT 1 cut(s) 35
AclWI GGATC 3 cut(s) 783, 796, 1146
AcoI YGGCCR 1 cut(s) 1222
AcsI RAATTY 4 cut(s) 184, 190, 398, 647
AcuI CTGAAG 1 cut(s) 681
AcvI CACGTG 1 cut(s) 832
AfaI GTAC 2 cut(s) 370, 1237
AflIII ACRYGT 1 cut(s) 831
AgsI TTSAA 4 cut(s) 189, 511, 691, 999
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 2 cut(s) 986, 1133
AjuI GAANNNNNNNTTGG 2 cut(s) 175, 207
AluBI AGCT 6 cut(s) 50, 220, 551, 584, 641, 917
AluI AGCT 6 cut(s) 50, 220, 551, 584, 641, 917
Alw26I GTCTC 3 cut(s) 429, 519, 1066
AlwI GGATC 3 cut(s) 783, 796, 1146
AoxI GGCC 1 cut(s) 1222
ApeKI GCWGC 3 cut(s) 548, 581, 1130
ApoI RAATTY 4 cut(s) 184, 190, 398, 647
Asp700I GAANNNNTTC 2 cut(s) 515, 1207
AspLEI GCGC 2 cut(s) 536, 1102
AspS9I GGNCC 3 cut(s) 99, 229, 238
AsuHPI GGTGA 4 cut(s) 51, 122, 533, 833
AvaII GGWCC 3 cut(s) 99, 229, 238
BamHI GGATCC 1 cut(s) 788
BanII GRGCYC 2 cut(s) 82, 155
BauI CACGAG 1 cut(s) 380
BbrPI CACGTG 1 cut(s) 832
BbsI GAAGAC 2 cut(s) 276, 1152
BbvI GCAGC 3 cut(s) 560, 593, 1142
BccI CCATC 5 cut(s) 70, 634, 779, 871, 1052
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 2 cut(s) 988, 1135
BcoDI GTCTC 3 cut(s) 429, 519, 1066
BfaI CTAG 5 cut(s) 47, 522, 545, 1049, 1086
BfmI CTRYAG 2 cut(s) 636, 837
BfuAI ACCTGC 1 cut(s) 359
BisI GCNGC 4 cut(s) 549, 582, 1131, 1225
BlpI GCTNAGC 1 cut(s) 297
BlsI GCNGC 4 cut(s) 550, 583, 1132, 1226
Bme1390I CCNGG 2 cut(s) 988, 1135
Bme18I GGWCC 3 cut(s) 99, 229, 238
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 3 cut(s) 99, 229, 238
BmiI GGNNCC 5 cut(s) 81, 101, 152, 498, 790
BmrFI CCNGG 2 cut(s) 988, 1135
BmsI GCATC 4 cut(s) 363, 562, 655, 1027
BpiI GAAGAC 2 cut(s) 276, 1152
BpmI CTGGAG 2 cut(s) 242, 453
Bpu1102I GCTNAGC 1 cut(s) 297
BsaAI YACGTR 1 cut(s) 832
BsaI GGTCTC 3 cut(s) 429, 519, 1066
BsaJI CCNNGG 3 cut(s) 986, 987, 1134
BsaWI WCCGGW 1 cut(s) 629
Bse1I ACTGG 5 cut(s) 573, 1076, 1194, 1228, 1245
Bse3DI GCAATG 1 cut(s) 1170
BseBI CCWGG 2 cut(s) 988, 1135
BseDI CCNNGG 3 cut(s) 986, 987, 1134
BseGI GGATG 9 cut(s) 205, 322, 460, 577, 626, 913, 963, 1174, 1264
BseMI GCAATG 1 cut(s) 1170
BseMII CTCAG 1 cut(s) 744
BseNI ACTGG 5 cut(s) 573, 1076, 1194, 1228, 1245
BseRI GAGGAG 2 cut(s) 299, 344
BseXI GCAGC 3 cut(s) 560, 593, 1142
BsgI GTGCAG 1 cut(s) 606
Bsh1236I CGCG 1 cut(s) 534
BshFI GGCC 1 cut(s) 1224
BsiSI CCGG 2 cut(s) 314, 630
BslFI GGGAC 3 cut(s) 85, 155, 638
BsmAI GTCTC 3 cut(s) 429, 519, 1066
BsmFI GGGAC 3 cut(s) 85, 155, 638
BsnI GGCC 1 cut(s) 1224
Bso31I GGTCTC 3 cut(s) 429, 519, 1066
Bsp1286I GDGCHC 2 cut(s) 82, 155
Bsp143I GATC 4 cut(s) 788, 826, 1005, 1138
Bsp1720I GCTNAGC 1 cut(s) 297
BspACI CCGC 3 cut(s) 439, 604, 1225
BspANI GGCC 1 cut(s) 1224
BspCNI CTCAG 1 cut(s) 745
BspFNI CGCG 1 cut(s) 534
BspLI GGNNCC 5 cut(s) 81, 101, 152, 498, 790
BspMAI CTGCAG 1 cut(s) 841
BspMI ACCTGC 1 cut(s) 359
BspPI GGATC 3 cut(s) 783, 796, 1146
BspQI GCTCTTC 1 cut(s) 771
BspTNI GGTCTC 3 cut(s) 429, 519, 1066
BsrDI GCAATG 1 cut(s) 1170
BsrI ACTGG 5 cut(s) 573, 1076, 1194, 1228, 1245
BssECI CCNNGG 3 cut(s) 986, 987, 1134
BssMI GATC 4 cut(s) 788, 826, 1005, 1138
BssSI CACGAG 1 cut(s) 380
Bst2BI CACGAG 1 cut(s) 380
Bst2UI CCWGG 2 cut(s) 988, 1135
Bst4CI ACNGT 2 cut(s) 368, 1151
Bst6I CTCTTC 4 cut(s) 119, 381, 686, 771
BstBAI YACGTR 1 cut(s) 832
BstC8I GCNNGC 2 cut(s) 52, 927
BstDEI CTNAG 4 cut(s) 195, 297, 552, 753
BstF5I GGATG 9 cut(s) 205, 322, 460, 577, 626, 913, 963, 1174, 1264
BstFNI CGCG 1 cut(s) 534
BstHHI GCGC 2 cut(s) 536, 1102
BstKTI GATC 4 cut(s) 791, 829, 1008, 1141
BstMAI GTCTC 3 cut(s) 429, 519, 1066
BstMBI GATC 4 cut(s) 788, 826, 1005, 1138
BstMWI GCNNNNNNNGC 2 cut(s) 581, 1130
BstNI CCWGG 2 cut(s) 988, 1135
BstSCI CCNGG 2 cut(s) 986, 1133
BstSFI CTRYAG 2 cut(s) 636, 837
BstUI CGCG 1 cut(s) 534
BstV1I GCAGC 3 cut(s) 560, 593, 1142
BstV2I GAAGAC 2 cut(s) 276, 1152
BstX2I RGATCY 1 cut(s) 788
BstYI RGATCY 1 cut(s) 788
BsuRI GGCC 1 cut(s) 1224
BtgZI GCGATG 1 cut(s) 786
BtrI CACGTC 1 cut(s) 256
BtsCI GGATG 9 cut(s) 205, 322, 460, 577, 626, 913, 963, 1174, 1264
BtsI GCAGTG 2 cut(s) 341, 618
BtsIMutI CAGTG 4 cut(s) 341, 618, 1156, 1201
BveI ACCTGC 1 cut(s) 359
Cac8I GCNNGC 2 cut(s) 52, 927
CfoI GCGC 2 cut(s) 536, 1102
Cfr13I GGNCC 3 cut(s) 99, 229, 238
Csp6I GTAC 2 cut(s) 369, 1236
CviAII CATG 1 cut(s) 904
CviQI GTAC 2 cut(s) 369, 1236
DdeI CTNAG 4 cut(s) 195, 297, 552, 753
DpnI GATC 4 cut(s) 790, 828, 1007, 1140
DpnII GATC 4 cut(s) 788, 826, 1005, 1138
EaeI YGGCCR 1 cut(s) 1222
Eam1104I CTCTTC 4 cut(s) 119, 381, 686, 771
EarI CTCTTC 4 cut(s) 119, 381, 686, 771
Eco24I GRGCYC 2 cut(s) 82, 155
Eco31I GGTCTC 3 cut(s) 429, 519, 1066
Eco47I GGWCC 3 cut(s) 99, 229, 238
Eco57I CTGAAG 1 cut(s) 681
Eco72I CACGTG 1 cut(s) 832
EcoO109I RGGNCCY 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 647
EcoRII CCWGG 2 cut(s) 986, 1133
EcoT38I GRGCYC 2 cut(s) 82, 155
FaeI CATG 1 cut(s) 907
FaqI GGGAC 3 cut(s) 85, 155, 638
FatI CATG 1 cut(s) 903
FauI CCCGC 1 cut(s) 597
Fnu4HI GCNGC 4 cut(s) 549, 582, 1131, 1225
FokI GGATG 8 cut(s) 212, 329, 467, 584, 613, 920, 970, 1181
FriOI GRGCYC 2 cut(s) 82, 155
Fsp4HI GCNGC 4 cut(s) 549, 582, 1131, 1225
FspBI CTAG 5 cut(s) 47, 522, 545, 1049, 1086
GlaI GCGC 2 cut(s) 535, 1101
GluI GCNGC 4 cut(s) 549, 582, 1131, 1225
GsuI CTGGAG 2 cut(s) 242, 453
HaeIII GGCC 1 cut(s) 1224
HapII CCGG 2 cut(s) 314, 630
HhaI GCGC 2 cut(s) 536, 1102
Hin1II CATG 1 cut(s) 907
Hin6I GCGC 2 cut(s) 534, 1100
HinP1I GCGC 2 cut(s) 534, 1100
HinfI GANTC 8 cut(s) 482, 561, 596, 859, 890, 1064, 1094, 1110
HpaII CCGG 2 cut(s) 314, 630
HphI GGTGA 4 cut(s) 51, 122, 533, 833
Hpy166II GTNNAC 1 cut(s) 1211
Hpy188I TCNGA 3 cut(s) 471, 661, 1069
Hpy188III TCNNGA 6 cut(s) 121, 236, 374, 845, 867, 1142
Hpy8I GTNNAC 1 cut(s) 1211
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 3 cut(s) 220, 242, 445
HpyCH4III ACNGT 2 cut(s) 368, 1151
HpyCH4IV ACGT 3 cut(s) 35, 255, 831
HpyCH4V TGCA 7 cut(s) 177, 354, 575, 623, 839, 1130, 1163
HpyF10VI GCNNNNNNNGC 2 cut(s) 581, 1130
HpyF3I CTNAG 4 cut(s) 195, 297, 552, 753
HpySE526I ACGT 3 cut(s) 35, 255, 831
Hsp92II CATG 1 cut(s) 907
HspAI GCGC 2 cut(s) 534, 1100
Kzo9I GATC 4 cut(s) 788, 826, 1005, 1138
LguI GCTCTTC 1 cut(s) 771
LmnI GCTCC 4 cut(s) 85, 150, 286, 331
Lsp1109I GCAGC 3 cut(s) 560, 593, 1142
LweI GCATC 4 cut(s) 363, 562, 655, 1027
MaeI CTAG 5 cut(s) 47, 522, 545, 1049, 1086
MaeII ACGT 3 cut(s) 35, 255, 831
MaeIII GTNAC 1 cut(s) 212
MalI GATC 4 cut(s) 790, 828, 1007, 1140
MboI GATC 4 cut(s) 788, 826, 1005, 1138
MfeI CAATTG 1 cut(s) 1119
MflI RGATCY 1 cut(s) 788
MhlI GDGCHC 2 cut(s) 82, 155
MlyI GAGTC 4 cut(s) 555, 590, 1073, 1119
MmeI TCCRAC 3 cut(s) 589, 1047, 1236
MroXI GAANNNNTTC 2 cut(s) 515, 1207
MseI TTAA 1 cut(s) 345
MspI CCGG 2 cut(s) 314, 630
MspR9I CCNGG 2 cut(s) 988, 1135
MunI CAATTG 1 cut(s) 1119
MvaI CCWGG 2 cut(s) 988, 1135
MvnI CGCG 1 cut(s) 534
MwoI GCNNNNNNNGC 2 cut(s) 581, 1130
NdeII GATC 4 cut(s) 788, 826, 1005, 1138
NlaIII CATG 1 cut(s) 907
NlaIV GGNNCC 5 cut(s) 81, 101, 152, 498, 790
PasI CCCWGGG 1 cut(s) 987
PciSI GCTCTTC 1 cut(s) 771
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PdmI GAANNNNTTC 2 cut(s) 515, 1207
PfeI GAWTC 4 cut(s) 482, 859, 890, 1094
PkrI GCNGC 4 cut(s) 550, 583, 1132, 1226
PleI GAGTC 4 cut(s) 555, 590, 1072, 1118
PmaCI CACGTG 1 cut(s) 832
PmlI CACGTG 1 cut(s) 832
PpsI GAGTC 4 cut(s) 555, 590, 1072, 1118
Ppu21I YACGTR 1 cut(s) 832
PpuMI RGGWCCY 1 cut(s) 229
PsiI TTATAA 1 cut(s) 324
Psp1406I AACGTT 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 229
Psp6I CCWGG 2 cut(s) 986, 1133
PspCI CACGTG 1 cut(s) 832
PspGI CCWGG 2 cut(s) 986, 1133
PspN4I GGNNCC 5 cut(s) 81, 101, 152, 498, 790
PspPI GGNCC 3 cut(s) 99, 229, 238
PspPPI RGGWCCY 1 cut(s) 229
PstI CTGCAG 1 cut(s) 841
PsuI RGATCY 1 cut(s) 788
RsaI GTAC 2 cut(s) 370, 1237
RsaNI GTAC 2 cut(s) 369, 1236
SapI GCTCTTC 1 cut(s) 771
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 4 cut(s) 549, 582, 1131, 1225
Sau3AI GATC 4 cut(s) 788, 826, 1005, 1138
Sau96I GGNCC 3 cut(s) 99, 229, 238
SchI GAGTC 4 cut(s) 555, 590, 1073, 1119
ScrFI CCNGG 2 cut(s) 988, 1135
SduI GDGCHC 2 cut(s) 82, 155
SfaNI GCATC 4 cut(s) 363, 562, 655, 1027
SfcI CTRYAG 2 cut(s) 636, 837
SinI GGWCC 3 cut(s) 99, 229, 238
SsiI CCGC 3 cut(s) 439, 604, 1225
SspMI CTAG 5 cut(s) 47, 522, 545, 1049, 1086
StyD4I CCNGG 2 cut(s) 986, 1133
TaaI ACNGT 2 cut(s) 368, 1151
TaiI ACGT 3 cut(s) 38, 258, 834
TaqI TCGA 5 cut(s) 22, 39, 120, 375, 586
TatI WGTACW 1 cut(s) 368
TauI GCSGC 1 cut(s) 1227
TfiI GAWTC 4 cut(s) 482, 859, 890, 1094
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 4 cut(s) 341, 625, 1156, 1201
TseI GCWGC 3 cut(s) 548, 581, 1130
TspDTI ATGAA 8 cut(s) 411, 464, 495, 660, 789, 882, 1185, 1191
TspGWI ACGGA 4 cut(s) 72, 871, 932, 986
TspRI CASTG 4 cut(s) 341, 625, 1156, 1201
VpaK11BI GGWCC 3 cut(s) 99, 229, 238
XapI RAATTY 4 cut(s) 184, 190, 398, 647
XcmI CCANNNNNNNNNTGG 1 cut(s) 1252
XmnI GAANNNNTTC 2 cut(s) 515, 1207
XspI CTAG 5 cut(s) 47, 522, 545, 1049, 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.