FvH4_6g05290

39S ribosomal protein L45

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013393
Physical Location & Seq
Reverse (-)
2975459 .. 2979406
3948 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05290.t1

Sequence Viewer

Length: 900 bp
ATGATGGCTTTCAGAGGCTTAAAGACAATTCGGGCTCTGTTCCGTGCGACCCAGATTCAAGAACCTGCCTATCTGCTTGGAAGCTCGAGAAGCTACACAACTGGTATTTCAAATGTTGCTGAACTTAATAACCGGAATGTGTACTCAAGCTTATTCCATGGAGCACTTCCTTGGACTTCTAGAAATGCTATGACGCTGCGTTCTTCAATGGCGGTCGAGTTGCCAATGCTGTTGAGTGAGAAAAGGTTGCTGTCCACACAAGTAAAAGCTCCTGCTCAGGCAAGAAAAATGGGAGGACTTACCGTTTCCATGACAAGTCCTGGATTTATCTATGAGCCTTATGCACCTCGTGAAAAAGTGCCATTTTTCCGGAGGTGGTTCACCAGAAGTGGCTGGAGAAGAACAAAAGAAGAAATTATTTTAGAGCTTAAAAGTGCATATGCTATTCATAAATTAAGGAAATCGGGATATTCAAAGAATCTATTCTACAAAGAAGCAGTCACTGTATACAAGGAGATAAATACTCTATTGGCAACTGGAGACAAAAACACTTTACGGAAAGCAGTTACGGAGAAAATGTACTCTGAACTAAAGAATGAAATAAAACAGAGAGAATCCATATGGAGTAAGGTTTATTGGGAAATGGTGGAGCCCATTGAAAAAATACGCACCTTGCGAGCACGAGTGATTGGTGTTGATCCAAAAGATCTTGAAAAGGTGTTTATACAGATTACACTTGAGTTTCTGTCAAAGCAGAAATTCGAAGCATACGACTCAAAGGGTTCTGTTGTTTCTGGAGATAAATCTAAGGAGGTCCTTGTCCGTGATATCTGGGTATTTGAAAAGTCTCTCTTCCATCCTAAATCTTTCTGGCGTCTATGTGGGAGGATTACTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim44

Protein Analysis

300

Amino Acids

34.65

Weight (kDa)

10.04

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim44 PF04280 145 - 295 3e-22 Tim44-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27395 AT5G27395
fragaria_vesca FvH4_6g05290
malus_domestica MD04G1209800.v1.1 MD12G1224400.v1.1
prunus_persica Prupe.6G330700_v2.0.a1 Prupe.6G330700_v2.0.a1
pyrus_communis pycom04g18600 pycom12g21000
rosa_chinensis RchiOBHm_Chr3g0454031
rosa_laevigata RLG00000025488
rosa_multiflora Rmu_sc0019265.1_g000003 Rmu_sc0020385.1_g000006
rosa_rugosa Rorug02G0652400
rosa_samantha Rh3AG055100 Rh3BG056700 Rh3DG057200
rosa_wichuraiana Rw3G004230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 73
AccI GTMKAC 1 cut(s) 507
AccIII TCCGGA 1 cut(s) 369
AciI CCGC 1 cut(s) 212
AclWI GGATC 1 cut(s) 692
AcsI RAATTY 1 cut(s) 758
AcyI GRCGYC 1 cut(s) 874
AdeI CACNNNGTG 1 cut(s) 350
AfaI GTAC 2 cut(s) 143, 581
AgsI TTSAA 7 cut(s) 59, 111, 207, 474, 659, 713, 842
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 5 cut(s) 84, 93, 150, 269, 427
AluI AGCT 5 cut(s) 84, 93, 150, 269, 427
Alw21I GWGCWC 2 cut(s) 166, 682
Alw26I GTCTC 2 cut(s) 534, 852
AlwI GGATC 1 cut(s) 692
AlwNI CAGNNNCTG 1 cut(s) 503
Ama87I CYCGRG 1 cut(s) 85
Aor13HI TCCGGA 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 758
ArsI GACNNNNNNTTYG 2 cut(s) 483, 515
Asp700I GAANNNNTTC 1 cut(s) 482
AspS9I GGNCC 1 cut(s) 814
AsuHPI GGTGA 1 cut(s) 373
AsuII TTCGAA 1 cut(s) 762
AvaI CYCGRG 1 cut(s) 85
AvaII GGWCC 1 cut(s) 814
BanII GRGCYC 2 cut(s) 37, 654
BauI CACGAG 2 cut(s) 348, 681
Bbv12I GWGCWC 2 cut(s) 166, 682
BbvI GCAGC 1 cut(s) 183
BccI CCATC 1 cut(s) 864
BciT130I CCWGG 1 cut(s) 321
BcoDI GTCTC 2 cut(s) 534, 852
BfaI CTAG 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 73
BglII AGATCT 1 cut(s) 706
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 321
Bme18I GGWCC 1 cut(s) 814
BmeT110I CYCGRG 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 814
BmiI GGNNCC 1 cut(s) 651
BmrFI CCNGG 1 cut(s) 321
BplI GAGNNNNNCTC 1 cut(s) 877
BpmI CTGGAG 3 cut(s) 415, 558, 816
Bpu10I CCTNAGC 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 762
BpuEI CTTGAG 2 cut(s) 130, 758
BsaHI GRCGYC 1 cut(s) 874
BsaJI CCNNGG 2 cut(s) 157, 170
BsaWI WCCGGW 2 cut(s) 132, 369
BsaXI ACNNNNNCTCC 2 cut(s) 563, 593
Bse1I ACTGG 2 cut(s) 106, 541
BseAI TCCGGA 1 cut(s) 369
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 2 cut(s) 157, 170
BseGI GGATG 1 cut(s) 856
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 2 cut(s) 106, 541
BseXI GCAGC 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 216
BsiEI CGRYCG 1 cut(s) 216
BsiHKAI GWGCWC 2 cut(s) 166, 682
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 2 cut(s) 133, 370
BsmAI GTCTC 2 cut(s) 534, 852
BsoBI CYCGRG 1 cut(s) 85
Bsp119I TTCGAA 1 cut(s) 762
Bsp1286I GDGCHC 4 cut(s) 37, 166, 654, 682
Bsp13I TCCGGA 1 cut(s) 369
Bsp143I GATC 2 cut(s) 697, 706
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 1 cut(s) 212
BspCNI CTCAG 1 cut(s) 289
BspEI TCCGGA 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 651
BspMI ACCTGC 1 cut(s) 73
BspPI GGATC 1 cut(s) 692
BspT104I TTCGAA 1 cut(s) 762
BsrI ACTGG 2 cut(s) 106, 541
BssECI CCNNGG 2 cut(s) 157, 170
BssMI GATC 2 cut(s) 697, 706
BssNAI GTATAC 1 cut(s) 508
BssNI GRCGYC 1 cut(s) 874
BssSI CACGAG 2 cut(s) 348, 681
BssT1I CCWWGG 2 cut(s) 157, 170
Bst1107I GTATAC 1 cut(s) 508
Bst2BI CACGAG 2 cut(s) 348, 681
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 2 cut(s) 304, 505
Bst6I CTCTTC 1 cut(s) 857
BstACI GRCGYC 1 cut(s) 874
BstBI TTCGAA 1 cut(s) 762
BstC8I GCNNGC 1 cut(s) 678
BstDEI CTNAG 2 cut(s) 276, 807
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 1 cut(s) 856
BstKTI GATC 2 cut(s) 700, 709
BstMAI GTCTC 2 cut(s) 534, 852
BstMBI GATC 2 cut(s) 697, 706
BstMCI CGRYCG 1 cut(s) 216
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 319
BstV1I GCAGC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 706
BstYI RGATCY 1 cut(s) 706
BstZ17I GTATAC 1 cut(s) 508
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 1 cut(s) 856
BtsIMutI CAGTG 1 cut(s) 501
BveI ACCTGC 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 678
CaiI CAGNNNCTG 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 814
CseI GACGC 2 cut(s) 202, 863
Csp6I GTAC 2 cut(s) 142, 580
CviAII CATG 2 cut(s) 158, 310
CviQI GTAC 2 cut(s) 142, 580
DdeI CTNAG 2 cut(s) 276, 807
DpnI GATC 2 cut(s) 699, 708
DpnII GATC 2 cut(s) 697, 706
DraIII CACNNNGTG 1 cut(s) 350
Eam1104I CTCTTC 1 cut(s) 857
EarI CTCTTC 1 cut(s) 857
Eco130I CCWWGG 2 cut(s) 157, 170
Eco24I GRGCYC 2 cut(s) 37, 654
Eco32I GATATC 1 cut(s) 829
Eco47I GGWCC 1 cut(s) 814
Eco88I CYCGRG 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 814
EcoRII CCWGG 1 cut(s) 319
EcoRV GATATC 1 cut(s) 829
EcoT14I CCWWGG 2 cut(s) 157, 170
EcoT38I GRGCYC 2 cut(s) 37, 654
ErhI CCWWGG 2 cut(s) 157, 170
FaeI CATG 2 cut(s) 161, 313
FalI AAGNNNNNCTT 2 cut(s) 836, 868
FatI CATG 2 cut(s) 157, 309
FauNDI CATATG 2 cut(s) 439, 620
FblI GTMKAC 1 cut(s) 507
Fnu4HI GCNGC 1 cut(s) 197
FokI GGATG 1 cut(s) 843
FriOI GRGCYC 2 cut(s) 37, 654
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 1 cut(s) 180
GluI GCNGC 1 cut(s) 197
GsuI CTGGAG 3 cut(s) 415, 558, 816
HapII CCGG 2 cut(s) 133, 370
HgaI GACGC 2 cut(s) 202, 863
Hin1I GRCGYC 1 cut(s) 874
Hin1II CATG 2 cut(s) 161, 313
HindIII AAGCTT 1 cut(s) 148
HinfI GANTC 4 cut(s) 55, 478, 614, 773
HpaII CCGG 2 cut(s) 133, 370
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 4 cut(s) 142, 255, 381, 508
Hpy188I TCNGA 2 cut(s) 14, 586
Hpy188III TCNNGA 8 cut(s) 59, 87, 180, 350, 370, 465, 710, 795
Hpy8I GTNNAC 4 cut(s) 142, 255, 381, 508
HpyCH4III ACNGT 2 cut(s) 304, 505
HpyCH4V TGCA 2 cut(s) 344, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 2 cut(s) 276, 807
Hsp92I GRCGYC 1 cut(s) 874
Hsp92II CATG 2 cut(s) 161, 313
Kpn2I TCCGGA 1 cut(s) 369
Kzo9I GATC 2 cut(s) 697, 706
LmnI GCTCC 3 cut(s) 161, 274, 649
Lsp1109I GCAGC 1 cut(s) 183
MaeI CTAG 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 499, 565
MalI GATC 2 cut(s) 699, 708
MboI GATC 2 cut(s) 697, 706
MboII GAAGA 4 cut(s) 195, 411, 422, 844
MflI RGATCY 1 cut(s) 706
MhlI GDGCHC 4 cut(s) 37, 166, 654, 682
MluCI AATT 4 cut(s) 27, 414, 452, 758
MlyI GAGTC 1 cut(s) 767
MnlI CCTC 6 cut(s) 8, 287, 357, 366, 805, 879
MroI TCCGGA 1 cut(s) 369
MroXI GAANNNNTTC 1 cut(s) 482
MseI TTAA 4 cut(s) 20, 126, 429, 455
MspI CCGG 2 cut(s) 133, 370
MspR9I CCNGG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 1 cut(s) 90
NcoI CCATGG 1 cut(s) 157
NdeI CATATG 2 cut(s) 439, 620
NdeII GATC 2 cut(s) 697, 706
NlaIII CATG 2 cut(s) 161, 313
NlaIV GGNNCC 1 cut(s) 651
NmuCI GTSAC 1 cut(s) 499
NspV TTCGAA 1 cut(s) 762
PaeR7I CTCGAG 1 cut(s) 85
PcsI WCGNNNNNNNCGW 2 cut(s) 673, 768
PdmI GAANNNNTTC 1 cut(s) 482
PfeI GAWTC 3 cut(s) 55, 478, 614
PfoI TCCNGGA 1 cut(s) 319
PkrI GCNGC 1 cut(s) 198
PleI GAGTC 1 cut(s) 767
PpsI GAGTC 1 cut(s) 767
PpuMI RGGWCCY 1 cut(s) 814
Psp5II RGGWCCY 1 cut(s) 814
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 651
PspPI GGNCC 1 cut(s) 814
PspPPI RGGWCCY 1 cut(s) 814
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 1 cut(s) 706
RsaI GTAC 2 cut(s) 143, 581
RsaNI GTAC 2 cut(s) 142, 580
SaqAI TTAA 4 cut(s) 20, 126, 429, 455
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 2 cut(s) 697, 706
Sau96I GGNCC 1 cut(s) 814
SchI GAGTC 1 cut(s) 767
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 4 cut(s) 37, 166, 654, 682
Sfr274I CTCGAG 1 cut(s) 85
SfuI TTCGAA 1 cut(s) 762
SinI GGWCC 1 cut(s) 814
SlaI CTCGAG 1 cut(s) 85
SmlI CTYRAG 3 cut(s) 85, 145, 737
SmoI CTYRAG 3 cut(s) 85, 145, 737
Sse9I AATT 4 cut(s) 27, 414, 452, 758
SsiI CCGC 1 cut(s) 212
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 2 cut(s) 157, 170
TaaI ACNGT 2 cut(s) 304, 505
TaqI TCGA 3 cut(s) 86, 216, 762
TasI AATT 4 cut(s) 27, 414, 452, 758
TatI WGTACW 2 cut(s) 141, 579
TfiI GAWTC 3 cut(s) 55, 478, 614
Tru1I TTAA 4 cut(s) 20, 126, 429, 455
Tru9I TTAA 4 cut(s) 20, 126, 429, 455
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 2 cut(s) 437, 612
TspGWI ACGGA 4 cut(s) 32, 571, 584, 812
TspRI CASTG 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 814
XapI RAATTY 1 cut(s) 758
XbaI TCTAGA 1 cut(s) 179
XhoI CTCGAG 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 507
XmnI GAANNNNTTC 1 cut(s) 482
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.