Rmu_sc0019265.1_g000003

39S ribosomal protein L45

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019265.1
OG0013393
Physical Location & Seq
Reverse (-)
12011 .. 14278
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019265.1_g000003.1.cds

Sequence Viewer

Length: 666 bp
atgatggctttcagaagctcaaacacgattcgtgttctcttgcgtgcgacccagattcaagaatcttcgtatcttcttggatgctcaagaagctacggaactggtatttcaaatgtggccgaacttaatagccggaacatgtactcaagcttatataagggcaatggagcacttccttggacttgtagaaatgctatgacgctgcgttctgcaatggctgtcgagttgccaatcttcttgaatgacaaaaggttgctatccacacaagtaaaagcagctgcccaagcaagacaaatgggagcacttagagtttccatgacaagcccaggatttatctatgagccttatgcacctcgtgaaaaagttccatttttccagagatggttcactagaagtggctggagaagaacaaaagaagatataattttagagcttaaaagtgcatatgctattaataaattaagaaagtcggggtattcaaagaatctattctacaaagaagcaatcaatgtatacaaggagataaatactctattggcaactggagacaaaaacactttaaggaaagcagttacggagaaaatgtattctgtatgcttctgttcttttgatttactgttaagctttctgttcgaaatactatctgctgtatcactgctttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim44

Protein Analysis

221

Amino Acids

25.12

Weight (kDa)

9.92

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27395 AT5G27395
fragaria_vesca FvH4_6g05290
malus_domestica MD04G1209800.v1.1 MD12G1224400.v1.1
prunus_persica Prupe.6G330700_v2.0.a1 Prupe.6G330700_v2.0.a1
pyrus_communis pycom04g18600 pycom12g21000
rosa_chinensis RchiOBHm_Chr3g0454031
rosa_laevigata RLG00000025488
rosa_multiflora Rmu_sc0019265.1_g000003 Rmu_sc0020385.1_g000006
rosa_rugosa Rorug02G0652400
rosa_samantha Rh3AG055100 Rh3BG056700 Rh3DG057200
rosa_wichuraiana Rw3G004230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 513
AcoI YGGCCR 1 cut(s) 117
AdeI CACNNNGTG 1 cut(s) 356
AfaI GTAC 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 4 cut(s) 59, 111, 241, 480
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 6 cut(s) 18, 93, 150, 278, 433, 624
AluI AGCT 6 cut(s) 18, 93, 150, 278, 433, 624
Alw21I GWGCWC 2 cut(s) 172, 304
Alw26I GTCTC 1 cut(s) 540
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 3 cut(s) 202, 275, 278
AseI ATTAAT 1 cut(s) 453
Asp700I GAANNNNTTC 2 cut(s) 363, 488
AsuII TTCGAA 1 cut(s) 633
BauI CACGAG 1 cut(s) 354
Bbv12I GWGCWC 2 cut(s) 172, 304
BbvI GCAGC 3 cut(s) 189, 265, 287
BccI CCATC 1 cut(s) 375
BciT130I CCWGG 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 540
BfaI CTAG 1 cut(s) 390
BisI GCNGC 3 cut(s) 203, 276, 279
BlsI GCNGC 3 cut(s) 204, 277, 280
Bme1390I CCNGG 1 cut(s) 327
BmrFI CCNGG 1 cut(s) 327
BmsI GCATC 1 cut(s) 71
BpmI CTGGAG 2 cut(s) 421, 564
Bpu14I TTCGAA 1 cut(s) 633
BpuEI CTTGAG 2 cut(s) 70, 130
BsaJI CCNNGG 2 cut(s) 176, 325
BsaXI ACNNNNNCTCC 2 cut(s) 569, 599
Bse1I ACTGG 2 cut(s) 106, 547
Bse3DI GCAATG 2 cut(s) 169, 219
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 176, 325
BseGI GGATG 1 cut(s) 86
BseMI GCAATG 2 cut(s) 169, 219
BseNI ACTGG 2 cut(s) 106, 547
BseXI GCAGC 3 cut(s) 189, 265, 287
BshFI GGCC 1 cut(s) 119
BsiHKAI GWGCWC 2 cut(s) 172, 304
BsiSI CCGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 540
BsnI GGCC 1 cut(s) 119
Bsp119I TTCGAA 1 cut(s) 633
Bsp1286I GDGCHC 2 cut(s) 172, 304
BspANI GGCC 1 cut(s) 119
BspT104I TTCGAA 1 cut(s) 633
BsrDI GCAATG 2 cut(s) 169, 219
BsrI ACTGG 2 cut(s) 106, 547
BssECI CCNNGG 2 cut(s) 176, 325
BssNAI GTATAC 1 cut(s) 514
BssSI CACGAG 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 176
Bst1107I GTATAC 1 cut(s) 514
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 618
BstBI TTCGAA 1 cut(s) 633
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 86
BstMAI GTCTC 1 cut(s) 540
BstMWI GCNNNNNNNGC 2 cut(s) 90, 284
BstNI CCWGG 1 cut(s) 327
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 325
BstV1I GCAGC 3 cut(s) 189, 265, 287
BstZ17I GTATAC 1 cut(s) 514
BsuRI GGCC 1 cut(s) 119
BtsCI GGATG 1 cut(s) 86
BtsI GCAGTG 1 cut(s) 653
BtsIMutI CAGTG 1 cut(s) 653
Cac8I GCNNGC 1 cut(s) 45
CseI GACGC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 142
CviAII CATG 2 cut(s) 139, 316
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 1 cut(s) 305
DraIII CACNNNGTG 1 cut(s) 356
EaeI YGGCCR 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 2 cut(s) 142, 319
FatI CATG 2 cut(s) 138, 315
FauNDI CATATG 1 cut(s) 445
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 3 cut(s) 203, 276, 279
FokI GGATG 1 cut(s) 93
Fsp4HI GCNGC 3 cut(s) 203, 276, 279
FspBI CTAG 1 cut(s) 390
GluI GCNGC 3 cut(s) 203, 276, 279
GsuI CTGGAG 2 cut(s) 421, 564
HaeIII GGCC 1 cut(s) 119
HapII CCGG 1 cut(s) 133
HgaI GACGC 1 cut(s) 208
Hin1II CATG 2 cut(s) 142, 319
HindIII AAGCTT 2 cut(s) 148, 622
HinfI GANTC 4 cut(s) 28, 55, 62, 484
HpaII CCGG 1 cut(s) 133
Hpy166II GTNNAC 2 cut(s) 387, 514
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 6 cut(s) 59, 87, 238, 356, 376, 663
Hpy8I GTNNAC 2 cut(s) 387, 514
HpyCH4III ACNGT 1 cut(s) 618
HpyCH4V TGCA 3 cut(s) 212, 350, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 284
HpyF3I CTNAG 1 cut(s) 305
Hsp92II CATG 2 cut(s) 142, 319
LmnI GCTCC 2 cut(s) 167, 299
LpnPI CCDG 8 cut(s) 65, 87, 146, 312, 339, 385, 389, 528
Lsp1109I GCAGC 3 cut(s) 189, 265, 287
LweI GCATC 1 cut(s) 71
MaeI CTAG 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 571
MboII GAAGA 5 cut(s) 57, 65, 226, 417, 428
MhlI GDGCHC 2 cut(s) 172, 304
MluCI AATT 2 cut(s) 423, 458
MnlI CCTC 1 cut(s) 363
MroXI GAANNNNTTC 2 cut(s) 363, 488
MseI TTAA 6 cut(s) 126, 435, 453, 461, 560, 620
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 2 cut(s) 90, 284
NdeI CATATG 1 cut(s) 445
NlaIII CATG 2 cut(s) 142, 319
NspI RCATGY 1 cut(s) 142
NspV TTCGAA 1 cut(s) 633
PciI ACATGT 1 cut(s) 138
PdmI GAANNNNTTC 2 cut(s) 363, 488
PfeI GAWTC 4 cut(s) 28, 55, 62, 484
PkrI GCNGC 3 cut(s) 204, 277, 280
PscI ACATGT 1 cut(s) 138
PshBI ATTAAT 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SaqAI TTAA 6 cut(s) 126, 435, 453, 461, 560, 620
SatI GCNGC 3 cut(s) 203, 276, 279
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 2 cut(s) 172, 304
SetI ASST 8 cut(s) 20, 95, 152, 254, 280, 355, 435, 626
SfaNI GCATC 1 cut(s) 71
SfuI TTCGAA 1 cut(s) 633
SmlI CTYRAG 2 cut(s) 85, 145
SmoI CTYRAG 2 cut(s) 85, 145
Sse9I AATT 2 cut(s) 423, 458
SspMI CTAG 1 cut(s) 390
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 618
TaqI TCGA 2 cut(s) 222, 633
TasI AATT 2 cut(s) 423, 458
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 4 cut(s) 28, 55, 62, 484
Tru1I TTAA 6 cut(s) 126, 435, 453, 461, 560, 620
Tru9I TTAA 6 cut(s) 126, 435, 453, 461, 560, 620
TscAI CASTG 1 cut(s) 660
TseI GCWGC 3 cut(s) 202, 275, 278
TspGWI ACGGA 2 cut(s) 111, 590
TspRI CASTG 1 cut(s) 660
VspI ATTAAT 1 cut(s) 453
XceI RCATGY 1 cut(s) 142
XmiI GTMKAC 1 cut(s) 513
XmnI GAANNNNTTC 2 cut(s) 363, 488
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.