Rh3BG056700

39S ribosomal protein L45

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0013393
Physical Location & Seq
Reverse (-)
3880691 .. 3884588
3898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG056700.1

Sequence Viewer

Length: 969 bp
ATGATGGCTTTCAGAAGCTCAAACACGATTCGTGTTCTCTTGCGTGCGACCCAGATTCAAGAATCTTCGTATCTTCTTGGATGCTCAAGAAGCTACGGAACTGGTATTTCAAATGTGGCCGAACTTAATAGCCGGAACACGTACTCAAGCTTATATAAGGGCAATGGAGCACTTCCTTGGACTTGTAGAAATGCTATGACGCTGCGTTCTGCAATGGCTGTCGAGTTGCCAATCTTCTTGAATAATAAAAGGTTGCTATCCACACAAGTAAAAGCACCTGCCCAAGCAAGACAAATGGGAGCACTTAGAGTTTCCATGACAAGCCCAGGATTTATCTATGAGCCTTATGCACCTCGTGAAAAAGTTCCATTTTTCCAGAGATGGTTCACTAGAAGTGGCTGGAGAAGAACAAAAGAAGATATAATTTTAGAGCTTAAAAGTGCATATGCTATTAATAAATTAAGAAAGTCGGGATATTCAAAGAATCTATTCTACAAAGAAGCAATCAATGTATACAAGGAGGTATGTTCATCTTCTGTTCTCGCTTTTCAATTTTCAATTTTTTATTGCTTCTTTCAGTTGGGCTGTACTCGTACTTCCTTTCACTCATTAATTAACCTTCTTATCCAGATAAATACTCTATTGGCAACTGGAGACAAAAACACTTTAAGGAAAGCAGTTACGGAGAAAATGTATTCCGTATGCTTCTGTTCTTTTGATTTACTGTTAAGCTTTCTGTTCGAAATACTATCTGCTATTGGTGTTGATCCAAAAGATCTTGAAAAGGTGTTTATACAGCTTACACTTGAGTTTCTGTCAAAGCAGAAGTTTGAAGCATATGACTCAAAGGGTTCTGTTGTTGCTGGAGATAAATCTAAGGAGGTTCTTGTCCGTGATATCTGGGTATTTGAAAAGTCTCTCTTCCATCCTAAATCTTTCTGGCGTCTTTGTGGGAGGATTACTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim44

Protein Analysis

322

Amino Acids

36.82

Weight (kDa)

9.71

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim44 PF04280 206 - 318 1e-12 Tim44-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27395 AT5G27395
fragaria_vesca FvH4_6g05290
malus_domestica MD04G1209800.v1.1 MD12G1224400.v1.1
prunus_persica Prupe.6G330700_v2.0.a1 Prupe.6G330700_v2.0.a1
pyrus_communis pycom04g18600 pycom12g21000
rosa_chinensis RchiOBHm_Chr3g0454031
rosa_laevigata RLG00000025488
rosa_multiflora Rmu_sc0019265.1_g000003 Rmu_sc0020385.1_g000006
rosa_rugosa Rorug02G0652400
rosa_samantha Rh3AG055100 Rh3BG056700 Rh3DG057200
rosa_wichuraiana Rw3G004230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 286
AccI GTMKAC 1 cut(s) 513
AclWI GGATC 1 cut(s) 761
AcoI YGGCCR 1 cut(s) 117
AcyI GRCGYC 1 cut(s) 943
AdeI CACNNNGTG 1 cut(s) 356
AfaI GTAC 3 cut(s) 143, 589, 595
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 9 cut(s) 59, 111, 241, 480, 551, 558, 782, 833, 911
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 6 cut(s) 18, 93, 150, 433, 732, 799
AluI AGCT 6 cut(s) 18, 93, 150, 433, 732, 799
Alw21I GWGCWC 2 cut(s) 172, 304
Alw26I GTCTC 2 cut(s) 648, 921
AlwI GGATC 1 cut(s) 761
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 202
AseI ATTAAT 2 cut(s) 453, 611
Asp700I GAANNNNTTC 2 cut(s) 363, 488
AsuII TTCGAA 1 cut(s) 741
BarI GAAGNNNNNNTAC 2 cut(s) 580, 612
BauI CACGAG 1 cut(s) 354
Bbv12I GWGCWC 2 cut(s) 172, 304
BbvI GCAGC 1 cut(s) 189
BccI CCATC 2 cut(s) 375, 933
BciT130I CCWGG 1 cut(s) 327
BcoDI GTCTC 2 cut(s) 648, 921
BfaI CTAG 1 cut(s) 390
BfuAI ACCTGC 1 cut(s) 286
BglII AGATCT 1 cut(s) 775
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
Bme1390I CCNGG 1 cut(s) 327
BmrFI CCNGG 1 cut(s) 327
BmsI GCATC 1 cut(s) 71
BplI GAGNNNNNCTC 1 cut(s) 946
BpmI CTGGAG 3 cut(s) 421, 672, 885
Bpu14I TTCGAA 1 cut(s) 741
BpuEI CTTGAG 3 cut(s) 70, 130, 827
BsaAI YACGTR 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 943
BsaJI CCNNGG 2 cut(s) 176, 325
BsaXI ACNNNNNCTCC 2 cut(s) 677, 707
Bse1I ACTGG 2 cut(s) 106, 655
Bse3DI GCAATG 2 cut(s) 169, 219
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 176, 325
BseGI GGATG 2 cut(s) 86, 925
BseMI GCAATG 2 cut(s) 169, 219
BseNI ACTGG 2 cut(s) 106, 655
BseXI GCAGC 1 cut(s) 189
BshFI GGCC 1 cut(s) 119
BsiHKAI GWGCWC 2 cut(s) 172, 304
BsiSI CCGG 1 cut(s) 133
BsmAI GTCTC 2 cut(s) 648, 921
BsnI GGCC 1 cut(s) 119
Bsp119I TTCGAA 1 cut(s) 741
Bsp1286I GDGCHC 2 cut(s) 172, 304
Bsp143I GATC 2 cut(s) 766, 775
BspANI GGCC 1 cut(s) 119
BspMI ACCTGC 1 cut(s) 286
BspPI GGATC 1 cut(s) 761
BspT104I TTCGAA 1 cut(s) 741
BsrDI GCAATG 2 cut(s) 169, 219
BsrI ACTGG 2 cut(s) 106, 655
BssECI CCNNGG 2 cut(s) 176, 325
BssMI GATC 2 cut(s) 766, 775
BssNAI GTATAC 1 cut(s) 514
BssNI GRCGYC 1 cut(s) 943
BssSI CACGAG 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 176
Bst1107I GTATAC 1 cut(s) 514
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 726
Bst6I CTCTTC 1 cut(s) 926
BstACI GRCGYC 1 cut(s) 943
BstBAI YACGTR 1 cut(s) 141
BstBI TTCGAA 1 cut(s) 741
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 2 cut(s) 305, 876
BstF5I GGATG 2 cut(s) 86, 925
BstKTI GATC 2 cut(s) 769, 778
BstMAI GTCTC 2 cut(s) 648, 921
BstMBI GATC 2 cut(s) 766, 775
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
BstZ17I GTATAC 1 cut(s) 514
BsuRI GGCC 1 cut(s) 119
BtsCI GGATG 2 cut(s) 86, 925
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 45
CseI GACGC 2 cut(s) 208, 932
Csp6I GTAC 3 cut(s) 142, 588, 594
CviAII CATG 1 cut(s) 316
CviQI GTAC 3 cut(s) 142, 588, 594
DdeI CTNAG 2 cut(s) 305, 876
DpnI GATC 2 cut(s) 768, 777
DpnII GATC 2 cut(s) 766, 775
DraIII CACNNNGTG 1 cut(s) 356
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 926
EarI CTCTTC 1 cut(s) 926
Eco130I CCWWGG 1 cut(s) 176
Eco32I GATATC 1 cut(s) 898
EcoRII CCWGG 1 cut(s) 325
EcoRV GATATC 1 cut(s) 898
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 1 cut(s) 319
FalI AAGNNNNNCTT 2 cut(s) 905, 937
FatI CATG 1 cut(s) 315
FauNDI CATATG 2 cut(s) 445, 838
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 1 cut(s) 203
FokI GGATG 2 cut(s) 93, 912
Fsp4HI GCNGC 1 cut(s) 203
FspBI CTAG 1 cut(s) 390
GluI GCNGC 1 cut(s) 203
GsuI CTGGAG 3 cut(s) 421, 672, 885
HaeIII GGCC 1 cut(s) 119
HapII CCGG 1 cut(s) 133
HgaI GACGC 2 cut(s) 208, 932
Hin1I GRCGYC 1 cut(s) 943
Hin1II CATG 1 cut(s) 319
HindIII AAGCTT 2 cut(s) 148, 730
HinfI GANTC 5 cut(s) 28, 55, 62, 484, 842
HpaII CCGG 1 cut(s) 133
Hpy166II GTNNAC 2 cut(s) 387, 514
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 8 cut(s) 59, 87, 238, 356, 376, 471, 628, 779
Hpy8I GTNNAC 2 cut(s) 387, 514
HpyAV CCTTC 1 cut(s) 629
HpyCH4III ACNGT 1 cut(s) 726
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 3 cut(s) 212, 350, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 2 cut(s) 305, 876
HpySE526I ACGT 1 cut(s) 140
Hsp92I GRCGYC 1 cut(s) 943
Hsp92II CATG 1 cut(s) 319
Kzo9I GATC 2 cut(s) 766, 775
LmnI GCTCC 2 cut(s) 167, 299
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 1 cut(s) 71
MaeI CTAG 1 cut(s) 390
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 679
MalI GATC 2 cut(s) 768, 777
MboI GATC 2 cut(s) 766, 775
MboII GAAGA 7 cut(s) 57, 65, 226, 417, 428, 525, 913
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 2 cut(s) 172, 304
MluCI AATT 5 cut(s) 423, 458, 551, 558, 612
MlyI GAGTC 1 cut(s) 836
MnlI CCTC 4 cut(s) 363, 514, 874, 948
MroXI GAANNNNTTC 2 cut(s) 363, 488
MseI TTAA 8 cut(s) 126, 435, 453, 461, 611, 615, 668, 728
MspI CCGG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeI CATATG 2 cut(s) 445, 838
NdeII GATC 2 cut(s) 766, 775
NlaIII CATG 1 cut(s) 319
NspV TTCGAA 1 cut(s) 741
PacI TTAATTAA 1 cut(s) 615
PaqCI CACCTGC 1 cut(s) 286
PdmI GAANNNNTTC 2 cut(s) 363, 488
PfeI GAWTC 4 cut(s) 28, 55, 62, 484
PkrI GCNGC 1 cut(s) 204
PleI GAGTC 1 cut(s) 836
PpsI GAGTC 1 cut(s) 836
Ppu21I YACGTR 1 cut(s) 141
PshBI ATTAAT 2 cut(s) 453, 611
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 775
RsaI GTAC 3 cut(s) 143, 589, 595
RsaNI GTAC 3 cut(s) 142, 588, 594
SaqAI TTAA 8 cut(s) 126, 435, 453, 461, 611, 615, 668, 728
SatI GCNGC 1 cut(s) 203
Sau3AI GATC 2 cut(s) 766, 775
SchI GAGTC 1 cut(s) 836
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 2 cut(s) 172, 304
SfaNI GCATC 1 cut(s) 71
SfuI TTCGAA 1 cut(s) 741
SmlI CTYRAG 3 cut(s) 85, 145, 806
SmoI CTYRAG 3 cut(s) 85, 145, 806
Sse9I AATT 5 cut(s) 423, 458, 551, 558, 612
SspMI CTAG 1 cut(s) 390
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 726
TaiI ACGT 1 cut(s) 143
TaqI TCGA 2 cut(s) 222, 741
TasI AATT 5 cut(s) 423, 458, 551, 558, 612
TatI WGTACW 1 cut(s) 587
TfiI GAWTC 4 cut(s) 28, 55, 62, 484
Tru1I TTAA 8 cut(s) 126, 435, 453, 461, 611, 615, 668, 728
Tru9I TTAA 8 cut(s) 126, 435, 453, 461, 611, 615, 668, 728
TseI GCWGC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 519
TspGWI ACGGA 4 cut(s) 111, 688, 698, 881
VspI ATTAAT 2 cut(s) 453, 611
XmiI GTMKAC 1 cut(s) 513
XmnI GAANNNNTTC 2 cut(s) 363, 488
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.