Rh3DG057200

39S ribosomal protein L45

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0013393
Physical Location & Seq
Reverse (-)
3880691 .. 3883596
2906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG057200.1

Sequence Viewer

Length: 591 bp
ATGACAAGCCCAGGATTTATCTATGAGCCTTATGCACCTCGTGAAAAAGTTCCATTTTTCCAGAGATGGTTCACTAGAAGTGGCTGGAGAAGAACAAAAGAAGATATAATTTTAGAGCTTAAAAGTGCATATGCTATTAATAAATTAAGAAAGTCGGGATATTCAAAGAATCTATTCTACAAAGAAGCAATCAATGTATACAAGGAGATAAATACTCTATTGGCAACTGGAGACAAAAACACTTTAAGGAAAGCAGTTACGGAGAAAATGTATTCCGAACTAAAGAATGAAATAAAACAGAGAGAATCCATATGGAGTAAGGTTTATTGGGAAATGGTGGAGCCAATTGTAAAAATACGCACCTTGCGAGCACGACTGATTGGTGTTGATCCAAAAGATCTTGAAAAGGTGTTTATACAGCTTACACTTGAGTTTCTGTCAAAGCAGAAGTTTGAAGCATATGACTCAAAGGGTTCTGTTGTTGCTGGAGATAAATCTAAGGAGGTTCTTGTCCGTGATATCTGGGTATTTGAAAAGTCTCTCTTCCATCCTAAATCTTTCTGGCGTCTTTGTGGGAGGATTACTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim44

Protein Analysis

196

Amino Acids

23.23

Weight (kDa)

9.76

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim44 PF04280 42 - 192 6e-23 Tim44-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27395 AT5G27395
fragaria_vesca FvH4_6g05290
malus_domestica MD04G1209800.v1.1 MD12G1224400.v1.1
prunus_persica Prupe.6G330700_v2.0.a1 Prupe.6G330700_v2.0.a1
pyrus_communis pycom04g18600 pycom12g21000
rosa_chinensis RchiOBHm_Chr3g0454031
rosa_laevigata RLG00000025488
rosa_multiflora Rmu_sc0019265.1_g000003 Rmu_sc0020385.1_g000006
rosa_rugosa Rorug02G0652400
rosa_samantha Rh3AG055100 Rh3BG056700 Rh3DG057200
rosa_wichuraiana Rw3G004230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 198
AclWI GGATC 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 565
AdeI CACNNNGTG 1 cut(s) 41
AgsI TTSAA 4 cut(s) 165, 404, 455, 533
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 2 cut(s) 118, 421
AluI AGCT 2 cut(s) 118, 421
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 2 cut(s) 225, 543
AlwI GGATC 1 cut(s) 383
AseI ATTAAT 1 cut(s) 138
Asp700I GAANNNNTTC 2 cut(s) 48, 173
BauI CACGAG 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 373
BccI CCATC 2 cut(s) 60, 555
BciT130I CCWGG 1 cut(s) 12
BcoDI GTCTC 2 cut(s) 225, 543
BfaI CTAG 1 cut(s) 75
BglII AGATCT 1 cut(s) 397
Bme1390I CCNGG 1 cut(s) 12
BmiI GGNNCC 1 cut(s) 342
BmrFI CCNGG 1 cut(s) 12
BplI GAGNNNNNCTC 1 cut(s) 568
BpmI CTGGAG 3 cut(s) 106, 249, 507
BpuEI CTTGAG 1 cut(s) 449
BsaHI GRCGYC 1 cut(s) 565
BsaJI CCNNGG 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bse1I ACTGG 1 cut(s) 232
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 547
BseNI ACTGG 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 373
BsmAI GTCTC 2 cut(s) 225, 543
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 2 cut(s) 388, 397
BspLI GGNNCC 1 cut(s) 342
BspPI GGATC 1 cut(s) 383
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 2 cut(s) 388, 397
BssNAI GTATAC 1 cut(s) 199
BssNI GRCGYC 1 cut(s) 565
BssSI CACGAG 1 cut(s) 39
Bst1107I GTATAC 1 cut(s) 199
Bst2BI CACGAG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 12
Bst6I CTCTTC 1 cut(s) 548
BstACI GRCGYC 1 cut(s) 565
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 1 cut(s) 498
BstF5I GGATG 1 cut(s) 547
BstKTI GATC 2 cut(s) 391, 400
BstMAI GTCTC 2 cut(s) 225, 543
BstMBI GATC 2 cut(s) 388, 397
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
BstZ17I GTATAC 1 cut(s) 199
BtsCI GGATG 1 cut(s) 547
Cac8I GCNNGC 1 cut(s) 369
CseI GACGC 1 cut(s) 554
CviJI RGCY 6 cut(s) 9, 28, 84, 118, 343, 421
CviKI_1 RGCY 6 cut(s) 9, 28, 84, 118, 343, 421
DdeI CTNAG 1 cut(s) 498
DpnI GATC 2 cut(s) 390, 399
DpnII GATC 2 cut(s) 388, 397
DraIII CACNNNGTG 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 548
EarI CTCTTC 1 cut(s) 548
Eco32I GATATC 1 cut(s) 520
EcoRII CCWGG 1 cut(s) 10
EcoRV GATATC 1 cut(s) 520
FalI AAGNNNNNCTT 2 cut(s) 527, 559
FauNDI CATATG 3 cut(s) 130, 311, 460
FblI GTMKAC 1 cut(s) 198
FokI GGATG 1 cut(s) 534
FspBI CTAG 1 cut(s) 75
GsuI CTGGAG 3 cut(s) 106, 249, 507
HgaI GACGC 1 cut(s) 554
Hin1I GRCGYC 1 cut(s) 565
HinfI GANTC 3 cut(s) 169, 305, 464
Hpy166II GTNNAC 2 cut(s) 72, 199
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 4 cut(s) 41, 61, 156, 401
Hpy8I GTNNAC 2 cut(s) 72, 199
HpyCH4V TGCA 2 cut(s) 35, 128
HpyF3I CTNAG 1 cut(s) 498
Hsp92I GRCGYC 1 cut(s) 565
Kzo9I GATC 2 cut(s) 388, 397
LmnI GCTCC 1 cut(s) 340
LpnPI CCDG 7 cut(s) 24, 70, 74, 213, 471, 508, 547
MaeI CTAG 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 256
MalI GATC 2 cut(s) 390, 399
MboI GATC 2 cut(s) 388, 397
MboII GAAGA 3 cut(s) 102, 113, 535
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 3 cut(s) 108, 143, 345
MlyI GAGTC 1 cut(s) 458
MnlI CCTC 3 cut(s) 48, 496, 570
MroXI GAANNNNTTC 2 cut(s) 48, 173
MseI TTAA 4 cut(s) 120, 138, 146, 245
MspR9I CCNGG 1 cut(s) 12
MunI CAATTG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 12
NdeI CATATG 3 cut(s) 130, 311, 460
NdeII GATC 2 cut(s) 388, 397
NlaIV GGNNCC 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 364
PdmI GAANNNNTTC 2 cut(s) 48, 173
PfeI GAWTC 2 cut(s) 169, 305
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
PshBI ATTAAT 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 342
PsuI RGATCY 1 cut(s) 397
SaqAI TTAA 4 cut(s) 120, 138, 146, 245
Sau3AI GATC 2 cut(s) 388, 397
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 1 cut(s) 373
SetI ASST 7 cut(s) 40, 120, 324, 365, 411, 423, 507
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 3 cut(s) 108, 143, 345
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 10
TasI AATT 3 cut(s) 108, 143, 345
TfiI GAWTC 2 cut(s) 169, 305
Tru1I TTAA 4 cut(s) 120, 138, 146, 245
Tru9I TTAA 4 cut(s) 120, 138, 146, 245
TspDTI ATGAA 1 cut(s) 303
TspGWI ACGGA 2 cut(s) 275, 503
VspI ATTAAT 1 cut(s) 138
XmiI GTMKAC 1 cut(s) 198
XmnI GAANNNNTTC 2 cut(s) 48, 173
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.