Rh3DG057100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
3879581 .. 3880066
486 bp
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UTR
Exon/CDS
Intron
Rh3DG057100.1

Sequence Viewer

Length: 486 bp
ATGGATGGCAGAGAAGAGCATCTTCAATCGCTAGGCATTTGCCAAAGGCTCTACAACTTCATCATGAGAAGCCTAGCCTCACAAGCCTTCAAGAGTGTGAATTTAGGCCCTCCAATGATTCAAGGCTTACCCTCAATTCCTCCTGAGGATGCTGTTCTTAATGAAGCTGGAACTAAATGCAATGGAAAAGTACACCCGAATCTCCCGTCTTCTTGTCCAGATGTTATTAAAGAGGAAATAGAAGATCAAATATCATCAATTGCTTCTCAAGAAAAACCTCTAAGGAAAACAGTCAGCATAAATGATGAAGTCGAGGATATGGAAAAAACTCTGAAGTTGAAAAGAAAAAAGAGCAAATCAAACGAAAAGTGGAATTCGTTAGAGCCACCAAGCAATGAGCAAATCCCTCTGAGATCATCAATTCTGAAGGTGGGTTCTGATTTGAGCAAGAAGATGGCTACATTTGTGAATCATAACTACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.0

Weight (kDa)

7.7

Isoelectric Point (pI)

54.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g05281
prunus_persica Prupe.6G330800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454021
rosa_laevigata RLG00000025489
rosa_roxburghii Rroxscaffold_6G00430820
rosa_rugosa Rorug02G0652400
rosa_samantha Rh3AG055000 Rh3BG056600 Rh3CG055800 Rh3DG057100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 100, 373
AcuI CTGAAG 2 cut(s) 353, 446
AfaI GTAC 1 cut(s) 192
AgsI TTSAA 4 cut(s) 26, 91, 122, 340
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
AoxI GGCC 1 cut(s) 106
ApoI RAATTY 2 cut(s) 100, 373
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
AspS9I GGNCC 1 cut(s) 107
AxyI CCTNAGG 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 201
BccI CCATC 1 cut(s) 448
BfaI CTAG 2 cut(s) 32, 74
BmgT120I GGNCC 1 cut(s) 107
BmsI GCATC 2 cut(s) 28, 139
BpiI GAAGAC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 252
Bse21I CCTNAGG 1 cut(s) 144
Bse3DI GCAATG 2 cut(s) 187, 400
BseGI GGATG 2 cut(s) 10, 154
BseMI GCAATG 2 cut(s) 187, 400
BseMII CTCAG 2 cut(s) 135, 401
BshFI GGCC 1 cut(s) 108
BsnI GGCC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 244, 413
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 2 cut(s) 136, 402
BspHI TCATGA 1 cut(s) 63
BspQI GCTCTTC 1 cut(s) 9
BsrDI GCAATG 2 cut(s) 187, 400
BssMI GATC 2 cut(s) 244, 413
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 9
BstDEI CTNAG 3 cut(s) 144, 281, 410
BstF5I GGATG 2 cut(s) 10, 154
BstKTI GATC 2 cut(s) 247, 416
BstMBI GATC 2 cut(s) 244, 413
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 201
Bsu36I CCTNAGG 1 cut(s) 144
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 2 cut(s) 10, 154
CciI TCATGA 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 191
CviAII CATG 1 cut(s) 64
CviJI RGCY 9 cut(s) 49, 72, 77, 86, 108, 126, 167, 385, 458
CviKI_1 RGCY 9 cut(s) 49, 72, 77, 86, 108, 126, 167, 385, 458
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 3 cut(s) 144, 281, 410
DpnI GATC 2 cut(s) 246, 415
DpnII GATC 2 cut(s) 244, 413
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco57I CTGAAG 2 cut(s) 353, 446
Eco81I CCTNAGG 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 373
FaeI CATG 1 cut(s) 67
FaiI YATR 4 cut(s) 65, 299, 320, 474
FalI AAGNNNNNCTT 1 cut(s) 38
FatI CATG 1 cut(s) 63
FokI GGATG 2 cut(s) 17, 161
FspBI CTAG 2 cut(s) 32, 74
HaeIII GGCC 1 cut(s) 108
Hin1II CATG 1 cut(s) 67
HinfI GANTC 3 cut(s) 118, 199, 469
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 4 cut(s) 333, 411, 426, 439
Hpy188III TCNNGA 5 cut(s) 64, 91, 143, 218, 269
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 97, 421
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 3 cut(s) 144, 281, 410
Hsp92II CATG 1 cut(s) 67
Kzo9I GATC 2 cut(s) 244, 413
LguI GCTCTTC 1 cut(s) 9
LpnPI CCDG 3 cut(s) 153, 156, 231
LweI GCATC 2 cut(s) 28, 139
MaeI CTAG 2 cut(s) 32, 74
MalI GATC 2 cut(s) 246, 415
MboI GATC 2 cut(s) 244, 413
MboII GAAGA 5 cut(s) 14, 26, 201, 254, 463
MfeI CAATTG 1 cut(s) 258
MluCI AATT 5 cut(s) 100, 135, 258, 373, 420
MnlI CCTC 9 cut(s) 88, 120, 139, 142, 150, 226, 288, 307, 417
MseI TTAA 2 cut(s) 159, 228
MunI CAATTG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 2 cut(s) 244, 413
NlaIII CATG 1 cut(s) 67
PagI TCATGA 1 cut(s) 63
PciSI GCTCTTC 1 cut(s) 9
PfeI GAWTC 3 cut(s) 118, 199, 469
PspPI GGNCC 1 cut(s) 107
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 9
SaqAI TTAA 2 cut(s) 159, 228
Sau3AI GATC 2 cut(s) 244, 413
Sau96I GGNCC 1 cut(s) 107
SetI ASST 3 cut(s) 169, 280, 432
SfaNI GCATC 2 cut(s) 28, 139
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 5 cut(s) 100, 135, 258, 373, 420
SspMI CTAG 2 cut(s) 32, 74
TaaI ACNGT 1 cut(s) 292
TaqI TCGA 1 cut(s) 312
TasI AATT 5 cut(s) 100, 135, 258, 373, 420
TatI WGTACW 1 cut(s) 190
TfiI GAWTC 3 cut(s) 118, 199, 469
Tru1I TTAA 2 cut(s) 159, 228
Tru9I TTAA 2 cut(s) 159, 228
TspDTI ATGAA 3 cut(s) 49, 177, 321
XapI RAATTY 2 cut(s) 100, 373
XspI CTAG 2 cut(s) 32, 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.