Rroxscaffold_6G00430820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018451
Physical Location & Seq
Reverse (-)
50914479 .. 50916254
1776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430820.1

Sequence Viewer

Length: 645 bp
ATGGATGGCAGAGAACAGCATCTTCAATCACTAGGCATTTGCCAAAGGCTCTACAACTTCGTCATGAGAAGCCTAGCCTCACAATCCTTCAAGAGTGTGACTTTAGGCCCTCCAATGATTCAAGGCTTGCCCTCAATTCCTGAGGATGCTGTTCAAGGCTTACCCTCAATTCCTGAGGATGCTGTTCTTAATGAAGCTGGAAATGATATTAAAGACGAAATTTCTCGAGCAATACCTCCAAGGAGAACAGTTAGCATAAATGATGAAGTCGAGGATATGGAGAAAACTCTGAAGTTGAGAAGAAAAAAGAGCAAATCATACGAAAAGTTGAAATCGTTAGACCCACCAAGCAATGGGCAAATCCCTCAGAGATCATCAATTCTGAAGGTGGGTTCTGATTTGAGCAAGAAGATGGCTACATTTGTGAATCAATTACAAGATTGGGAAGATATGGATGCAAGACCATTCCAGCAACCGCTATCATCATCTTCATCTTCATCATCAGCAGGAATTTGCCACAGGCTCTGCAATTTGGTATTGAAAATTGTAGCAGAACAATCCCACAAGACTGTTACTCTAGGCCGATCCGAGGAGTACTCGCGCTCCAGCAGCCAAAGTATCCGATCTGATGGCTTATACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.74

Weight (kDa)

8.4

Isoelectric Point (pI)

68.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g05281
prunus_persica Prupe.6G330800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454021
rosa_laevigata RLG00000025489
rosa_roxburghii Rroxscaffold_6G00430820
rosa_rugosa Rorug02G0652400
rosa_samantha Rh3AG055000 Rh3BG056600 Rh3CG055800 Rh3DG057100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 353
AccII CGCG 1 cut(s) 601
AciI CCGC 1 cut(s) 476
AclWI GGATC 1 cut(s) 579
AcsI RAATTY 2 cut(s) 219, 510
AcuI CTGAAG 2 cut(s) 311, 404
AfaI GTAC 1 cut(s) 596
AfiI CCNNNNNNNGG 2 cut(s) 353, 589
AgsI TTSAA 6 cut(s) 26, 91, 122, 155, 331, 541
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
AlwI GGATC 1 cut(s) 579
AlwNI CAGNNNCTG 1 cut(s) 525
Ama87I CYCGRG 1 cut(s) 225
AoxI GGCC 2 cut(s) 106, 580
ApeKI GCWGC 1 cut(s) 609
ApoI RAATTY 2 cut(s) 219, 510
AspLEI GCGC 1 cut(s) 603
AspS9I GGNCC 1 cut(s) 107
AvaI CYCGRG 1 cut(s) 225
AxyI CCTNAGG 2 cut(s) 141, 174
BbvI GCAGC 1 cut(s) 621
BccI CCATC 2 cut(s) 406, 623
BciVI GTATCC 1 cut(s) 629
BfaI CTAG 3 cut(s) 32, 74, 578
BfuI GTATCC 1 cut(s) 629
BisI GCNGC 1 cut(s) 610
BlsI GCNGC 1 cut(s) 611
BmcAI AGTACT 1 cut(s) 596
BmeT110I CYCGRG 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 107
BmsI GCATC 4 cut(s) 28, 136, 169, 445
BplI GAGNNNNNCTC 2 cut(s) 581, 613
BpmI CTGGAG 1 cut(s) 589
BsaJI CCNNGG 2 cut(s) 239, 588
BsaXI ACNNNNNCTCC 2 cut(s) 587, 617
Bsc4I CCNNNNNNNGG 2 cut(s) 353, 589
Bse21I CCTNAGG 2 cut(s) 141, 174
Bse3DI GCAATG 1 cut(s) 358
BseDI CCNNGG 2 cut(s) 239, 588
BseGI GGATG 4 cut(s) 10, 151, 184, 460
BseLI CCNNNNNNNGG 2 cut(s) 353, 589
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 3 cut(s) 132, 165, 380
BseRI GAGGAG 1 cut(s) 605
BseXI GCAGC 1 cut(s) 621
Bsh1236I CGCG 1 cut(s) 601
BshFI GGCC 2 cut(s) 108, 582
BsiHKCI CYCGRG 1 cut(s) 225
BslI CCNNNNNNNGG 2 cut(s) 353, 589
BsnI GGCC 2 cut(s) 108, 582
BsoBI CYCGRG 1 cut(s) 225
Bsp143I GATC 3 cut(s) 371, 584, 623
BspACI CCGC 1 cut(s) 476
BspANI GGCC 2 cut(s) 108, 582
BspCNI CTCAG 3 cut(s) 133, 166, 379
BspFNI CGCG 1 cut(s) 601
BspHI TCATGA 1 cut(s) 63
BspPI GGATC 1 cut(s) 579
BsrDI GCAATG 1 cut(s) 358
BssECI CCNNGG 2 cut(s) 239, 588
BssMI GATC 3 cut(s) 371, 584, 623
BssT1I CCWWGG 1 cut(s) 239
Bst4CI ACNGT 3 cut(s) 250, 571, 641
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 3 cut(s) 141, 174, 366
BstF5I GGATG 4 cut(s) 10, 151, 184, 460
BstFNI CGCG 1 cut(s) 601
BstHHI GCGC 1 cut(s) 603
BstKTI GATC 3 cut(s) 374, 587, 626
BstMBI GATC 3 cut(s) 371, 584, 623
BstMWI GCNNNNNNNGC 1 cut(s) 609
BstUI CGCG 1 cut(s) 601
BstV1I GCAGC 1 cut(s) 621
Bsu36I CCTNAGG 2 cut(s) 141, 174
BsuI GTATCC 1 cut(s) 629
BsuRI GGCC 2 cut(s) 108, 582
BtsCI GGATG 4 cut(s) 10, 151, 184, 460
Cac8I GCNNGC 1 cut(s) 128
CaiI CAGNNNCTG 1 cut(s) 525
CciI TCATGA 1 cut(s) 63
CfoI GCGC 1 cut(s) 603
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 595
CviAII CATG 1 cut(s) 64
CviQI GTAC 1 cut(s) 595
DdeI CTNAG 3 cut(s) 141, 174, 366
DpnI GATC 3 cut(s) 373, 586, 625
DpnII GATC 3 cut(s) 371, 584, 623
Eco130I CCWWGG 1 cut(s) 239
Eco57I CTGAAG 2 cut(s) 311, 404
Eco81I CCTNAGG 2 cut(s) 141, 174
Eco88I CYCGRG 1 cut(s) 225
EcoO109I RGGNCCY 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 1 cut(s) 67
FaiI YATR 6 cut(s) 65, 257, 278, 319, 452, 637
FatI CATG 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 610
FokI GGATG 4 cut(s) 17, 158, 191, 467
Fsp4HI GCNGC 1 cut(s) 610
FspBI CTAG 3 cut(s) 32, 74, 578
GlaI GCGC 1 cut(s) 602
GluI GCNGC 1 cut(s) 610
GsuI CTGGAG 1 cut(s) 589
HaeIII GGCC 2 cut(s) 108, 582
HhaI GCGC 1 cut(s) 603
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 1 cut(s) 601
HinP1I GCGC 1 cut(s) 601
HinfI GANTC 2 cut(s) 118, 427
Hpy188I TCNGA 7 cut(s) 291, 369, 384, 397, 589, 623, 628
Hpy188III TCNNGA 5 cut(s) 64, 91, 140, 173, 225
HpyAV CCTTC 2 cut(s) 97, 379
HpyCH4III ACNGT 3 cut(s) 250, 571, 641
HpyCH4V TGCA 2 cut(s) 458, 528
HpyF10VI GCNNNNNNNGC 1 cut(s) 609
HpyF3I CTNAG 3 cut(s) 141, 174, 366
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 1 cut(s) 601
Kzo9I GATC 3 cut(s) 371, 584, 623
LmnI GCTCC 1 cut(s) 608
LpnPI CCDG 7 cut(s) 153, 183, 186, 482, 492, 505, 619
Lsp1109I GCAGC 1 cut(s) 621
LweI GCATC 4 cut(s) 28, 136, 169, 445
MaeI CTAG 3 cut(s) 32, 74, 578
MaeIII GTNAC 2 cut(s) 97, 571
MalI GATC 3 cut(s) 373, 586, 625
MboI GATC 3 cut(s) 371, 584, 623
MboII GAAGA 6 cut(s) 14, 312, 421, 458, 480, 486
MluCI AATT 8 cut(s) 135, 168, 219, 378, 431, 510, 529, 543
MseI TTAA 2 cut(s) 189, 210
MvnI CGCG 1 cut(s) 601
MwoI GCNNNNNNNGC 1 cut(s) 609
NdeII GATC 3 cut(s) 371, 584, 623
NlaIII CATG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 97
PaeR7I CTCGAG 1 cut(s) 225
PagI TCATGA 1 cut(s) 63
PfeI GAWTC 2 cut(s) 118, 427
PflMI CCANNNNNTGG 1 cut(s) 353
PkrI GCNGC 1 cut(s) 611
PspPI GGNCC 1 cut(s) 107
PstNI CAGNNNCTG 1 cut(s) 525
RsaI GTAC 1 cut(s) 596
RsaNI GTAC 1 cut(s) 595
SaqAI TTAA 2 cut(s) 189, 210
SatI GCNGC 1 cut(s) 610
Sau3AI GATC 3 cut(s) 371, 584, 623
Sau96I GGNCC 1 cut(s) 107
ScaI AGTACT 1 cut(s) 596
SetI ASST 3 cut(s) 199, 238, 390
SfaNI GCATC 4 cut(s) 28, 136, 169, 445
Sfr274I CTCGAG 1 cut(s) 225
SlaI CTCGAG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
Sse9I AATT 8 cut(s) 135, 168, 219, 378, 431, 510, 529, 543
SsiI CCGC 1 cut(s) 476
SspMI CTAG 3 cut(s) 32, 74, 578
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 3 cut(s) 250, 571, 641
TaqI TCGA 2 cut(s) 226, 270
TasI AATT 8 cut(s) 135, 168, 219, 378, 431, 510, 529, 543
TatI WGTACW 1 cut(s) 594
TfiI GAWTC 2 cut(s) 118, 427
Tru1I TTAA 2 cut(s) 189, 210
Tru9I TTAA 2 cut(s) 189, 210
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 609
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 4 cut(s) 207, 279, 480, 486
Van91I CCANNNNNTGG 1 cut(s) 353
XapI RAATTY 2 cut(s) 219, 510
XhoI CTCGAG 1 cut(s) 225
XspI CTAG 3 cut(s) 32, 74, 578
ZrmI AGTACT 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.