FvH4_6g06190

Cullin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017681
Physical Location & Seq
Reverse (-)
3542418 .. 3546397
3980 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g06190.t2

Sequence Viewer

Length: 933 bp
ATGCAGTTTATACAACTTGATGAAGGTTTAGTGATTATAGATGAGGCATTTCAAAAGGCAAAGAAGATTGTGGAAGGATACCCTGAAACAAAGTTCACAACTGAAGAATATATGAAGTTCCATGCATGTGTTTACACTTTGTGCTATAAACCTGGGGATGGCAACAAGGCTGTTCTCCATGAAAAGTTTAGGAGGAGCTTGGAAGAGACCATTAACTCCACGGTACTGCCCTCTTTAGCCGCTAAAGAAAATGAACTTCTGTTGAGGGAATTGGTGCTTATGTGGTCAAATTACAAGTTAATGGCCAGGTGGTTATGTAGATTCTTTGAGTATCTGGACCGCTATTATAGCAGTTTTTGTTGTGGAGTTTCACTTGGTGAGACCTCAATTGATTGCTTCCGCAATTTGGTCTTCAACGTGTTGCTTAGTAGAATACAGGCAGCTGCATTGTCTTTGATTTGTGAAGAGCGTCATGGGAAGCAGATTGATACAAAGATGCTGCAAGATGTCATGAGTATCTTTATGGAAATTGGCAAAAACATATCAACACCATACTATGAAAACTTTGTGCAGGCAATGCTTGATGAAAGTGCCGCTTTCTACTCCCAGTTATCTTCTCAGTGGGTGGTGCATGACTCATTGACTGATTATATTCAGAAGGTGAACTGGTGCATGATGCAGGAAAAAGAAAGAGCTGGCCACTATCTAGATCCGACATCCGTGATTAAATTAATACAGGTGTTGCGGTGCCAGTTGCTGGATATGAAAGCACTTAAATTAGTTGAAAAGCTACAGTCTCAGAACTCCAGTCAACTGGATTATCAGGAGATATTGTCGAAATGTGCCGGCTTAGATCTTGGAGAGGAAAGCTCTACATCAACTCTCGGGGATCATCTTTCTGCTTTAATGGCAAAATCAGCTCATATTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Cullin

Protein Analysis

311

Amino Acids

35.67

Weight (kDa)

5.56

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin PF00888 2 - 173 6e-32 Cullin alpha solenoid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017681)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g06190 FvH4_6g06190 FvH4_6g06190
rosa_chinensis RchiOBHm_Chr3g0455211
rosa_laevigata RLG00000025377
rosa_multiflora Rmu_sc0002169.1_g000031
rosa_roxburghii Rroxscaffold_6G00424470
rosa_rugosa Rorug03G0004900 Rorug03G0005000
rosa_samantha Rh3BG067400 Rh3CG065800
rosa_wichuraiana Rw3G005140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 747
AccB7I CCANNNNNTGG 1 cut(s) 757
AciI CCGC 5 cut(s) 240, 340, 400, 594, 745
AclWI GGATC 2 cut(s) 704, 897
AcoI YGGCCR 2 cut(s) 303, 697
AcuI CTGAAG 1 cut(s) 123
AdeI CACNNNGTG 2 cut(s) 141, 377
AfaI GTAC 1 cut(s) 225
AfiI CCNNNNNNNGG 3 cut(s) 158, 406, 757
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 3 cut(s) 53, 415, 785
AjnI CCWGG 2 cut(s) 151, 305
AluBI AGCT 6 cut(s) 198, 443, 695, 790, 870, 920
AluI AGCT 6 cut(s) 198, 443, 695, 790, 870, 920
Alw26I GTCTC 3 cut(s) 200, 374, 801
AlwI GGATC 2 cut(s) 704, 897
AlwNI CAGNNNCTG 1 cut(s) 757
Ama87I CYCGRG 1 cut(s) 884
AoxI GGCC 2 cut(s) 303, 697
ApeKI GCWGC 3 cut(s) 440, 443, 499
AseI ATTAAT 1 cut(s) 731
AspS9I GGNCC 1 cut(s) 337
AsuHPI GGTGA 2 cut(s) 389, 673
AvaI CYCGRG 1 cut(s) 884
AvaII GGWCC 1 cut(s) 337
BalI TGGCCA 2 cut(s) 305, 699
BanI GGYRCC 1 cut(s) 747
BbsI GAAGAC 1 cut(s) 403
BbvI GCAGC 3 cut(s) 430, 452, 486
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 2 cut(s) 153, 307
BciVI GTATCC 1 cut(s) 71
BcoDI GTCTC 3 cut(s) 200, 374, 801
BfaI CTAG 1 cut(s) 707
BfmI CTRYAG 1 cut(s) 791
BfuI GTATCC 1 cut(s) 71
BglII AGATCT 1 cut(s) 853
BisI GCNGC 5 cut(s) 240, 441, 444, 500, 594
BlsI GCNGC 5 cut(s) 241, 442, 445, 501, 595
Bme1390I CCNGG 2 cut(s) 153, 307
Bme18I GGWCC 1 cut(s) 337
BmeT110I CYCGRG 1 cut(s) 884
BmgT120I GGNCC 1 cut(s) 337
BmiI GGNNCC 1 cut(s) 749
BmrFI CCNGG 2 cut(s) 153, 307
BmrI ACTGGG 1 cut(s) 601
BmsI GCATC 2 cut(s) 486, 666
BmuI ACTGGG 1 cut(s) 601
BpiI GAAGAC 1 cut(s) 403
BplI GAGNNNNNCTC 2 cut(s) 854, 886
BpmI CTGGAG 1 cut(s) 790
BsaI GGTCTC 2 cut(s) 200, 374
BsaJI CCNNGG 2 cut(s) 152, 219
BsaXI ACNNNNNCTCC 2 cut(s) 818, 848
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 406, 757
Bse118I RCCGGY 1 cut(s) 845
Bse1I ACTGG 5 cut(s) 607, 671, 751, 807, 819
Bse3DI GCAATG 1 cut(s) 582
BseBI CCWGG 2 cut(s) 153, 307
BseDI CCNNGG 2 cut(s) 152, 219
BseGI GGATG 2 cut(s) 163, 716
BseLI CCNNNNNNNGG 3 cut(s) 158, 406, 757
BseMI GCAATG 1 cut(s) 582
BseMII CTCAG 2 cut(s) 632, 812
BseNI ACTGG 5 cut(s) 607, 671, 751, 807, 819
BseRI GAGGAG 1 cut(s) 208
BseXI GCAGC 3 cut(s) 430, 452, 486
BsgI GTGCAG 1 cut(s) 590
BshFI GGCC 2 cut(s) 305, 699
BshNI GGYRCC 1 cut(s) 747
BsiHKCI CYCGRG 1 cut(s) 884
BsiSI CCGG 1 cut(s) 846
BslI CCNNNNNNNGG 3 cut(s) 158, 406, 757
BsmAI GTCTC 3 cut(s) 200, 374, 801
BsnI GGCC 2 cut(s) 305, 699
Bso31I GGTCTC 2 cut(s) 200, 374
BsoBI CYCGRG 1 cut(s) 884
Bsp143I GATC 3 cut(s) 709, 853, 889
BspACI CCGC 5 cut(s) 240, 340, 400, 594, 745
BspANI GGCC 2 cut(s) 305, 699
BspCNI CTCAG 2 cut(s) 631, 811
BspHI TCATGA 1 cut(s) 510
BspLI GGNNCC 1 cut(s) 749
BspPI GGATC 2 cut(s) 704, 897
BspQI GCTCTTC 1 cut(s) 459
BspT107I GGYRCC 1 cut(s) 747
BspTNI GGTCTC 2 cut(s) 200, 374
BsrDI GCAATG 1 cut(s) 582
BsrFI RCCGGY 1 cut(s) 845
BsrI ACTGG 5 cut(s) 607, 671, 751, 807, 819
BssAI RCCGGY 1 cut(s) 845
BssECI CCNNGG 2 cut(s) 152, 219
BssMI GATC 3 cut(s) 709, 853, 889
Bst2UI CCWGG 2 cut(s) 153, 307
Bst4CI ACNGT 2 cut(s) 223, 795
Bst6I CTCTTC 2 cut(s) 198, 459
BstAPI GCANNNNNTGC 1 cut(s) 577
BstC8I GCNNGC 3 cut(s) 573, 697, 847
BstDEI CTNAG 4 cut(s) 425, 618, 798, 850
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 163, 716
BstKTI GATC 3 cut(s) 712, 856, 892
BstMAI GTCTC 3 cut(s) 200, 374, 801
BstMBI GATC 3 cut(s) 709, 853, 889
BstMWI GCNNNNNNNGC 4 cut(s) 348, 577, 908, 917
BstNI CCWGG 2 cut(s) 153, 307
BstNSI RCATGY 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 151, 305
BstSFI CTRYAG 1 cut(s) 791
BstV1I GCAGC 3 cut(s) 430, 452, 486
BstV2I GAAGAC 1 cut(s) 403
BstX2I RGATCY 2 cut(s) 709, 853
BstXI CCANNNNNNTGG 1 cut(s) 814
BstYI RGATCY 2 cut(s) 709, 853
BsuI GTATCC 1 cut(s) 71
BsuRI GGCC 2 cut(s) 305, 699
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 2 cut(s) 163, 716
BtsIMutI CAGTG 1 cut(s) 626
Cac8I GCNNGC 3 cut(s) 573, 697, 847
CaiI CAGNNNCTG 1 cut(s) 757
CciI TCATGA 1 cut(s) 510
Cfr10I RCCGGY 1 cut(s) 845
Cfr13I GGNCC 1 cut(s) 337
CseI GACGC 1 cut(s) 458
Csp6I GTAC 1 cut(s) 224
CviAII CATG 7 cut(s) 122, 126, 179, 473, 511, 632, 673
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 4 cut(s) 425, 618, 798, 850
DpnI GATC 3 cut(s) 711, 855, 891
DpnII GATC 3 cut(s) 709, 853, 889
DraIII CACNNNGTG 2 cut(s) 141, 377
EaeI YGGCCR 2 cut(s) 303, 697
Eam1104I CTCTTC 2 cut(s) 198, 459
EarI CTCTTC 2 cut(s) 198, 459
Eco31I GGTCTC 2 cut(s) 200, 374
Eco47I GGWCC 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 884
EcoRII CCWGG 2 cut(s) 151, 305
EcoT22I ATGCAT 1 cut(s) 127
FaeI CATG 7 cut(s) 125, 129, 182, 476, 514, 635, 676
FalI AAGNNNNNCTT 2 cut(s) 580, 612
FatI CATG 7 cut(s) 121, 125, 178, 472, 510, 631, 672
Fnu4HI GCNGC 5 cut(s) 240, 441, 444, 500, 594
FokI GGATG 2 cut(s) 170, 703
Fsp4HI GCNGC 5 cut(s) 240, 441, 444, 500, 594
FspBI CTAG 1 cut(s) 707
GluI GCNGC 5 cut(s) 240, 441, 444, 500, 594
GsuI CTGGAG 1 cut(s) 790
HaeIII GGCC 2 cut(s) 305, 699
HapII CCGG 1 cut(s) 846
HgaI GACGC 1 cut(s) 458
Hin1II CATG 7 cut(s) 125, 129, 182, 476, 514, 635, 676
HincII GTYRAC 1 cut(s) 812
HindII GTYRAC 1 cut(s) 812
HinfI GANTC 2 cut(s) 321, 635
HpaII CCGG 1 cut(s) 846
HphI GGTGA 2 cut(s) 389, 673
Hpy166II GTNNAC 4 cut(s) 96, 133, 664, 812
Hpy188I TCNGA 3 cut(s) 657, 714, 801
Hpy188III TCNNGA 4 cut(s) 335, 511, 707, 824
Hpy8I GTNNAC 4 cut(s) 96, 133, 664, 812
HpyAV CCTTC 3 cut(s) 17, 68, 652
HpyCH4III ACNGT 2 cut(s) 223, 795
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 8 cut(s) 4, 125, 446, 502, 571, 631, 672, 679
HpyF10VI GCNNNNNNNGC 4 cut(s) 348, 577, 908, 917
HpyF3I CTNAG 4 cut(s) 425, 618, 798, 850
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 7 cut(s) 125, 129, 182, 476, 514, 635, 676
KroI GCCGGC 1 cut(s) 845
KroNI GCCGGC 1 cut(s) 847
Kzo9I GATC 3 cut(s) 709, 853, 889
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 1 cut(s) 195
Lsp1109I GCAGC 3 cut(s) 430, 452, 486
LweI GCATC 2 cut(s) 486, 666
MaeI CTAG 1 cut(s) 707
MaeII ACGT 1 cut(s) 417
MalI GATC 3 cut(s) 711, 855, 891
MboI GATC 3 cut(s) 709, 853, 889
MboII GAAGA 6 cut(s) 76, 116, 215, 403, 476, 606
MfeI CAATTG 1 cut(s) 387
MflI RGATCY 2 cut(s) 709, 853
MlsI TGGCCA 2 cut(s) 305, 699
MluCI AATT 7 cut(s) 269, 289, 387, 403, 528, 728, 776
MluNI TGGCCA 2 cut(s) 305, 699
MlyI GAGTC 1 cut(s) 629
MmeI TCCRAC 1 cut(s) 737
MnlI CCTC 6 cut(s) 37, 186, 241, 258, 394, 856
Mox20I TGGCCA 2 cut(s) 305, 699
Mph1103I ATGCAT 1 cut(s) 127
MroNI GCCGGC 1 cut(s) 845
MscI TGGCCA 2 cut(s) 305, 699
MseI TTAA 6 cut(s) 213, 299, 726, 731, 774, 905
MslI CAYNNNNRTG 1 cut(s) 126
Msp20I TGGCCA 2 cut(s) 305, 699
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 1 cut(s) 846
MspR9I CCNGG 2 cut(s) 153, 307
MunI CAATTG 1 cut(s) 387
MvaI CCWGG 2 cut(s) 153, 307
MwoI GCNNNNNNNGC 4 cut(s) 348, 577, 908, 917
NaeI GCCGGC 1 cut(s) 847
NdeII GATC 3 cut(s) 709, 853, 889
NgoMIV GCCGGC 1 cut(s) 845
NlaIII CATG 7 cut(s) 125, 129, 182, 476, 514, 635, 676
NlaIV GGNNCC 1 cut(s) 749
NsiI ATGCAT 1 cut(s) 127
NspI RCATGY 1 cut(s) 129
PagI TCATGA 1 cut(s) 510
PciSI GCTCTTC 1 cut(s) 459
PdiI GCCGGC 1 cut(s) 847
PfeI GAWTC 1 cut(s) 321
PflMI CCANNNNNTGG 1 cut(s) 757
PkrI GCNGC 5 cut(s) 241, 442, 445, 501, 595
PleI GAGTC 1 cut(s) 629
PpsI GAGTC 1 cut(s) 629
PshBI ATTAAT 1 cut(s) 731
Psp6I CCWGG 2 cut(s) 151, 305
PspGI CCWGG 2 cut(s) 151, 305
PspN4I GGNNCC 1 cut(s) 749
PspPI GGNCC 1 cut(s) 337
PstNI CAGNNNCTG 1 cut(s) 757
PsuI RGATCY 2 cut(s) 709, 853
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 126
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 6 cut(s) 213, 299, 726, 731, 774, 905
SatI GCNGC 5 cut(s) 240, 441, 444, 500, 594
Sau3AI GATC 3 cut(s) 709, 853, 889
Sau96I GGNCC 1 cut(s) 337
SchI GAGTC 1 cut(s) 629
ScrFI CCNGG 2 cut(s) 153, 307
SfaNI GCATC 2 cut(s) 486, 666
SfcI CTRYAG 1 cut(s) 791
SinI GGWCC 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 126
Sse9I AATT 7 cut(s) 269, 289, 387, 403, 528, 728, 776
SsiI CCGC 5 cut(s) 240, 340, 400, 594, 745
SspMI CTAG 1 cut(s) 707
StyD4I CCNGG 2 cut(s) 151, 305
TaaI ACNGT 2 cut(s) 223, 795
TaiI ACGT 1 cut(s) 420
TaqI TCGA 1 cut(s) 836
TasI AATT 7 cut(s) 269, 289, 387, 403, 528, 728, 776
TauI GCSGC 2 cut(s) 242, 596
TfiI GAWTC 1 cut(s) 321
Tru1I TTAA 6 cut(s) 213, 299, 726, 731, 774, 905
Tru9I TTAA 6 cut(s) 213, 299, 726, 731, 774, 905
TscAI CASTG 1 cut(s) 626
TseI GCWGC 3 cut(s) 440, 443, 499
TspDTI ATGAA 8 cut(s) 36, 128, 195, 267, 573, 600, 779, 917
TspGWI ACGGA 1 cut(s) 709
TspRI CASTG 1 cut(s) 626
Van91I CCANNNNNTGG 1 cut(s) 757
VpaK11BI GGWCC 1 cut(s) 337
VspI ATTAAT 1 cut(s) 731
XbaI TCTAGA 1 cut(s) 706
XceI RCATGY 1 cut(s) 129
XspI CTAG 1 cut(s) 707
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.