Rorug03G0004900

Cullin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0017681
Physical Location & Seq
Reverse (-)
402252 .. 402737
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0004900.1

Sequence Viewer

Length: 486 bp
ATGTACTCTGCTGGAAGTGAGACTTCAGCAACTACTATAGAGTGGACAATGGCGGAACTTATGAAAAATCCAATAGTAATGGAGAAAGCACAGGCCGAGATACGCCAAGTTGTTGCAGGAAAGAAGAAAATTCAAGAGGCAGACATTAAGAAACTAGACTACTTGAAGTTGGTCATAAAAGAAACTCTACGTCTGCACCCTCCAGCTCCCTTAATCCCAAGGAAAGCAAACAAAACATGCAAAGTCAGCGGATATGATGTACCGTCTGGAGCCAGGGTATTGGTCAATGCTTGGGCATTAGGAAGAGACCCGAAACATTGGGGCACCAGTGCTGATTGCTTTGAGCCTGAGAGGTTTCAAGGTTCTTCCATTGATTTTAAAGGGTCCGACTTTGAATTCATTCCATTTGGAGCTGGTAAGAGAATGTGTCCAGGCATCTCATTTGGAACTGCTGCTATTGAGATTGCACTTTCTCAGTTGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Cullin

Protein Analysis

161

Amino Acids

17.7

Weight (kDa)

8.97

Isoelectric Point (pI)

25.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 161 5.6e-57 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017681)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g06190 FvH4_6g06190 FvH4_6g06190
rosa_chinensis RchiOBHm_Chr3g0455211
rosa_laevigata RLG00000025377
rosa_multiflora Rmu_sc0002169.1_g000031
rosa_roxburghii Rroxscaffold_6G00424470
rosa_rugosa Rorug03G0004900 Rorug03G0005000
rosa_samantha Rh3BG067400 Rh3CG065800
rosa_wichuraiana Rw3G005140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 323
AciI CCGC 2 cut(s) 53, 249
AcsI RAATTY 2 cut(s) 129, 395
AcuI CTGAAG 1 cut(s) 9
AfaI GTAC 2 cut(s) 5, 261
AgsI TTSAA 4 cut(s) 134, 166, 359, 395
AjnI CCWGG 2 cut(s) 272, 430
AluBI AGCT 2 cut(s) 206, 413
AluI AGCT 2 cut(s) 206, 413
Alw26I GTCTC 2 cut(s) 14, 300
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 452
ApoI RAATTY 2 cut(s) 129, 395
Asp700I GAANNNNTTC 1 cut(s) 399
AspS9I GGNCC 1 cut(s) 384
AvaII GGWCC 1 cut(s) 384
BaeGI GKGCMC 1 cut(s) 326
BanI GGYRCC 1 cut(s) 323
BbvI GCAGC 1 cut(s) 439
BciT130I CCWGG 2 cut(s) 274, 432
BcoDI GTCTC 2 cut(s) 14, 300
BfaI CTAG 2 cut(s) 155, 484
BfmI CTRYAG 1 cut(s) 36
BisI GCNGC 1 cut(s) 453
BlsI GCNGC 1 cut(s) 454
Bme1390I CCNGG 2 cut(s) 274, 432
Bme18I GGWCC 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 384
BmiI GGNNCC 3 cut(s) 271, 325, 385
BmrFI CCNGG 2 cut(s) 274, 432
BmsI GCATC 1 cut(s) 444
BpmI CTGGAG 2 cut(s) 186, 288
BsaI GGTCTC 1 cut(s) 300
BsaJI CCNNGG 2 cut(s) 218, 273
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bse1I ACTGG 1 cut(s) 327
BseBI CCWGG 2 cut(s) 274, 432
BseDI CCNNGG 2 cut(s) 218, 273
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 327
BseSI GKGCMC 1 cut(s) 326
BseXI GCAGC 1 cut(s) 439
BsgI GTGCAG 1 cut(s) 179
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 323
BsmAI GTCTC 2 cut(s) 14, 300
BsnI GGCC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 326
BspACI CCGC 2 cut(s) 53, 249
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 3 cut(s) 271, 325, 385
BspT107I GGYRCC 1 cut(s) 323
BspTNI GGTCTC 1 cut(s) 300
BsrI ACTGG 1 cut(s) 327
BssECI CCNNGG 2 cut(s) 218, 273
BssT1I CCWWGG 1 cut(s) 218
Bst2UI CCWGG 2 cut(s) 274, 432
Bst4CI ACNGT 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 298
BstDEI CTNAG 2 cut(s) 348, 474
BstMAI GTCTC 2 cut(s) 14, 300
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstNI CCWGG 2 cut(s) 274, 432
BstNSI RCATGY 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 272, 430
BstSFI CTRYAG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 439
BstXI CCANNNNNNTGG 1 cut(s) 280
BsuRI GGCC 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 384
Csp6I GTAC 2 cut(s) 4, 260
CviAII CATG 1 cut(s) 237
CviJI RGCY 5 cut(s) 95, 206, 272, 346, 413
CviKI_1 RGCY 5 cut(s) 95, 206, 272, 346, 413
CviQI GTAC 2 cut(s) 4, 260
DdeI CTNAG 2 cut(s) 348, 474
DraI TTTAAA 1 cut(s) 379
Eam1104I CTCTTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 298
EciI GGCGGA 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 218
Eco31I GGTCTC 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 9
EcoRI GAATTC 1 cut(s) 395
EcoRII CCWGG 2 cut(s) 272, 430
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 1 cut(s) 240
FaiI YATR 5 cut(s) 38, 62, 176, 238, 255
FalI AAGNNNNNCTT 2 cut(s) 7, 39
FatI CATG 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 453
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 2 cut(s) 155, 484
GluI GCNGC 1 cut(s) 453
GsuI CTGGAG 2 cut(s) 186, 288
HaeIII GGCC 1 cut(s) 95
Hin1II CATG 1 cut(s) 240
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 2 cut(s) 134, 267
Hpy8I GTNNAC 1 cut(s) 45
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 4 cut(s) 116, 196, 240, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpyF3I CTNAG 2 cut(s) 348, 474
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 1 cut(s) 240
LmnI GCTCC 3 cut(s) 211, 269, 410
Lsp1109I GCAGC 1 cut(s) 439
LweI GCATC 1 cut(s) 444
MaeI CTAG 2 cut(s) 155, 484
MaeII ACGT 1 cut(s) 190
MboII GAAGA 3 cut(s) 136, 315, 357
MhlI GDGCHC 1 cut(s) 326
MluCI AATT 2 cut(s) 129, 395
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 3 cut(s) 130, 210, 345
MroXI GAANNNNTTC 1 cut(s) 399
MseI TTAA 3 cut(s) 147, 212, 378
MspA1I CMGCKG 1 cut(s) 249
MspR9I CCNGG 2 cut(s) 274, 432
MvaI CCWGG 2 cut(s) 274, 432
MwoI GCNNNNNNNGC 1 cut(s) 246
NlaIII CATG 1 cut(s) 240
NlaIV GGNNCC 3 cut(s) 271, 325, 385
NmeAIII GCCGAG 1 cut(s) 121
NspI RCATGY 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 399
PkrI GCNGC 1 cut(s) 454
Psp6I CCWGG 2 cut(s) 272, 430
PspGI CCWGG 2 cut(s) 272, 430
PspN4I GGNNCC 3 cut(s) 271, 325, 385
PspPI GGNCC 1 cut(s) 384
RsaI GTAC 2 cut(s) 5, 261
RsaNI GTAC 2 cut(s) 4, 260
SaqAI TTAA 3 cut(s) 147, 212, 378
SatI GCNGC 1 cut(s) 453
Sau96I GGNCC 1 cut(s) 384
ScrFI CCNGG 2 cut(s) 274, 432
SduI GDGCHC 1 cut(s) 326
SetI ASST 5 cut(s) 193, 208, 356, 364, 415
SfaNI GCATC 1 cut(s) 444
SfcI CTRYAG 1 cut(s) 36
SinI GGWCC 1 cut(s) 384
Sse9I AATT 2 cut(s) 129, 395
SsiI CCGC 2 cut(s) 53, 249
SspMI CTAG 2 cut(s) 155, 484
StyD4I CCNGG 2 cut(s) 272, 430
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 264
TaiI ACGT 1 cut(s) 193
TasI AATT 2 cut(s) 129, 395
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 3 cut(s) 147, 212, 378
Tru9I TTAA 3 cut(s) 147, 212, 378
TscAI CASTG 1 cut(s) 334
TseI GCWGC 1 cut(s) 452
TspDTI ATGAA 2 cut(s) 77, 388
TspRI CASTG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 384
XapI RAATTY 2 cut(s) 129, 395
XceI RCATGY 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 399
XspI CTAG 2 cut(s) 155, 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.