Rh3BG067400

Cullin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0017681
Physical Location & Seq
Reverse (-)
4550859 .. 4554424
3566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG067400.1

Sequence Viewer

Length: 960 bp
ATGTCTAGAACGCAGCCTCTTCCCAATTTGGGAGATCCCCGATTTCTGAGATCCGATTGTTGTGACAGGGTTATTTCTGAAAAAGCAAAGAGGATTGTGGAAGGATATCCTGACACAAAGTTCACCTCTGAAGAATATATGAAGTTCCATGCATGTGTTTATACTTTGTGCTATAAACCTGGGGATGACAACAAGGCGTTGCTCCATGAAAAATTTAAGAAGAGCTTGGAAGAGACCATTAATTCCACGGTACTGCCATCTTTAGCAGCCAAAGAAAATGAACTTCTGTTGAGGGAACTTGTGCTGATGTGGTCAAATTACAAGTTAATGGCTAAGTGGTTATGTAGATTCTTTGAATATCTTGACCGCTATTATAGCAGTTTTTGTTGTGGTGTTTCACTTGGTGAGACCTCGATTGATTGCTTCCGCAGTATGGTCTTCAACGTGTTGCATAGTAGAATTCAGGCAGCAGCAATGTCTTTGATTAATGAAGAGCGTCATGGGAAGCAGATTGATCGAAAGCTGCTGCAAGATGTCATGAGTATCTTTATGGAAATTGGCGAAAACAGATCAACATCATATTATGAAAACTTTGTACAGGCTATGCTTGAAGAAACTGCCGCTTTCTACTCCCAATCATCTTCTCAGTGGGTGGTTTATGACTCGTTGACCGATTATATTCAGAAGGTGAACTGGTGCATAATGCAGGAAAAAGAAAGAGCTGGCCACTATCTACATCCCACATCCGTGAAAAAATTAATACAGGTTTTGCAATGCCAGTTGCTGGATATGAACGCACTTAAATTGGTTGAAAAGCTACAGTCTCAGAACTCCAATCAACTGGATTATCAGGAGATATTGTCAAAATGTGCCTGCTTAAGTCTCGGAGAGGAAAGCTCTACACCAACTCTCGCGGAACATCTTTCTGCTTTAATGGCGAAATCTGCTCATATTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Cullin

Protein Analysis

319

Amino Acids

36.86

Weight (kDa)

6.17

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin PF00888 38 - 284 2.8e-46 Cullin alpha solenoid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017681)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g06190 FvH4_6g06190 FvH4_6g06190
rosa_chinensis RchiOBHm_Chr3g0455211
rosa_laevigata RLG00000025377
rosa_multiflora Rmu_sc0002169.1_g000031
rosa_roxburghii Rroxscaffold_6G00424470
rosa_rugosa Rorug03G0004900 Rorug03G0005000
rosa_samantha Rh3BG067400 Rh3CG065800
rosa_wichuraiana Rw3G005140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 784
AccII CGCG 1 cut(s) 914
AciI CCGC 4 cut(s) 367, 427, 621, 914
AclWI GGATC 2 cut(s) 29, 45
AcoI YGGCCR 1 cut(s) 724
AcsI RAATTY 2 cut(s) 212, 459
AcuI CTGAAG 1 cut(s) 150
AdeI CACNNNGTG 1 cut(s) 404
AfaI GTAC 2 cut(s) 252, 597
AfiI CCNNNNNNNGG 3 cut(s) 29, 433, 784
AflII CTTAAG 1 cut(s) 877
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 4 cut(s) 356, 442, 611, 812
AjnI CCWGG 1 cut(s) 178
AleI CACNNNNGTG 1 cut(s) 746
AluBI AGCT 5 cut(s) 225, 523, 722, 817, 897
AluI AGCT 5 cut(s) 225, 523, 722, 817, 897
Alw26I GTCTC 4 cut(s) 227, 401, 828, 887
AlwI GGATC 2 cut(s) 29, 45
AlwNI CAGNNNCTG 1 cut(s) 784
AoxI GGCC 1 cut(s) 724
ApeKI GCWGC 6 cut(s) 13, 266, 467, 470, 523, 526
ApoI RAATTY 2 cut(s) 212, 459
AseI ATTAAT 3 cut(s) 240, 486, 758
AsuHPI GGTGA 3 cut(s) 115, 416, 700
BalI TGGCCA 1 cut(s) 726
BbsI GAAGAC 1 cut(s) 430
BbvI GCAGC 6 cut(s) 25, 278, 479, 482, 510, 513
BccI CCATC 1 cut(s) 265
BcgI CGANNNNNNTGC 2 cut(s) 497, 531
BciT130I CCWGG 1 cut(s) 180
BcoDI GTCTC 4 cut(s) 227, 401, 828, 887
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 818
BfrI CTTAAG 1 cut(s) 877
BisI GCNGC 7 cut(s) 14, 267, 468, 471, 524, 527, 621
BlsI GCNGC 7 cut(s) 15, 268, 469, 472, 525, 528, 622
Bme1390I CCNGG 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 430
BplI GAGNNNNNCTC 2 cut(s) 881, 913
BsaBI GATNNNNATC 1 cut(s) 574
BsaI GGTCTC 2 cut(s) 227, 401
BsaJI CCNNGG 2 cut(s) 179, 246
BsaXI ACNNNNNCTCC 2 cut(s) 845, 875
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 433, 784
Bse1I ACTGG 3 cut(s) 698, 778, 846
Bse3DI GCAATG 2 cut(s) 480, 779
Bse8I GATNNNNATC 1 cut(s) 574
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 2 cut(s) 179, 246
BseGI GGATG 3 cut(s) 190, 736, 743
BseJI GATNNNNATC 1 cut(s) 574
BseLI CCNNNNNNNGG 3 cut(s) 29, 433, 784
BseMI GCAATG 2 cut(s) 480, 779
BseMII CTCAG 3 cut(s) 38, 659, 839
BseNI ACTGG 3 cut(s) 698, 778, 846
BseXI GCAGC 6 cut(s) 25, 278, 479, 482, 510, 513
Bsh1236I CGCG 1 cut(s) 914
BshFI GGCC 1 cut(s) 726
BslI CCNNNNNNNGG 3 cut(s) 29, 433, 784
BsmAI GTCTC 4 cut(s) 227, 401, 828, 887
BsnI GGCC 1 cut(s) 726
Bso31I GGTCTC 2 cut(s) 227, 401
Bsp1407I TGTACA 1 cut(s) 595
Bsp143I GATC 4 cut(s) 34, 50, 514, 569
BspACI CCGC 4 cut(s) 367, 427, 621, 914
BspANI GGCC 1 cut(s) 726
BspCNI CTCAG 3 cut(s) 39, 658, 838
BspFNI CGCG 1 cut(s) 914
BspHI TCATGA 1 cut(s) 537
BspPI GGATC 2 cut(s) 29, 45
BspQI GCTCTTC 2 cut(s) 215, 486
BspTI CTTAAG 1 cut(s) 877
BspTNI GGTCTC 2 cut(s) 227, 401
BsrDI GCAATG 2 cut(s) 480, 779
BsrGI TGTACA 1 cut(s) 595
BsrI ACTGG 3 cut(s) 698, 778, 846
BssECI CCNNGG 2 cut(s) 179, 246
BssMI GATC 4 cut(s) 34, 50, 514, 569
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 250, 822
Bst6I CTCTTC 4 cut(s) 24, 215, 225, 486
BstAFI CTTAAG 1 cut(s) 877
BstAUI TGTACA 1 cut(s) 595
BstC8I GCNNGC 2 cut(s) 724, 874
BstDEI CTNAG 4 cut(s) 47, 333, 645, 825
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 3 cut(s) 190, 736, 743
BstFNI CGCG 1 cut(s) 914
BstKTI GATC 4 cut(s) 37, 53, 517, 572
BstMAI GTCTC 4 cut(s) 227, 401, 828, 887
BstMBI GATC 4 cut(s) 34, 50, 514, 569
BstMWI GCNNNNNNNGC 3 cut(s) 375, 935, 944
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 818
BstUI CGCG 1 cut(s) 914
BstV1I GCAGC 6 cut(s) 25, 278, 479, 482, 510, 513
BstV2I GAAGAC 1 cut(s) 430
BstX2I RGATCY 2 cut(s) 34, 50
BstXI CCANNNNNNTGG 1 cut(s) 841
BstYI RGATCY 2 cut(s) 34, 50
BsuRI GGCC 1 cut(s) 726
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 3 cut(s) 190, 736, 743
BtsIMutI CAGTG 1 cut(s) 653
Cac8I GCNNGC 2 cut(s) 724, 874
CaiI CAGNNNCTG 1 cut(s) 784
CciI TCATGA 1 cut(s) 537
CseI GACGC 1 cut(s) 485
Csp6I GTAC 2 cut(s) 251, 596
CviAII CATG 5 cut(s) 149, 153, 206, 500, 538
CviQI GTAC 2 cut(s) 251, 596
DdeI CTNAG 4 cut(s) 47, 333, 645, 825
DpnI GATC 4 cut(s) 36, 52, 516, 571
DpnII GATC 4 cut(s) 34, 50, 514, 569
DraIII CACNNNGTG 1 cut(s) 404
EaeI YGGCCR 1 cut(s) 724
Eam1104I CTCTTC 4 cut(s) 24, 215, 225, 486
EarI CTCTTC 4 cut(s) 24, 215, 225, 486
Eco31I GGTCTC 2 cut(s) 227, 401
Eco32I GATATC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 150
EcoRI GAATTC 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 178
EcoRV GATATC 1 cut(s) 107
EcoT22I ATGCAT 1 cut(s) 154
FaeI CATG 5 cut(s) 152, 156, 209, 503, 541
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FatI CATG 5 cut(s) 148, 152, 205, 499, 537
Fnu4HI GCNGC 7 cut(s) 14, 267, 468, 471, 524, 527, 621
FokI GGATG 3 cut(s) 197, 723, 730
Fsp4HI GCNGC 7 cut(s) 14, 267, 468, 471, 524, 527, 621
FspBI CTAG 1 cut(s) 6
GluI GCNGC 7 cut(s) 14, 267, 468, 471, 524, 527, 621
HaeIII GGCC 1 cut(s) 726
HgaI GACGC 1 cut(s) 485
Hin1II CATG 5 cut(s) 152, 156, 209, 503, 541
HincII GTYRAC 1 cut(s) 669
HindII GTYRAC 1 cut(s) 669
HinfI GANTC 2 cut(s) 348, 662
HphI GGTGA 3 cut(s) 115, 416, 700
Hpy166II GTNNAC 3 cut(s) 123, 669, 691
Hpy188I TCNGA 7 cut(s) 48, 55, 79, 130, 684, 828, 887
Hpy188III TCNNGA 5 cut(s) 6, 110, 362, 538, 851
Hpy8I GTNNAC 3 cut(s) 123, 669, 691
HpyAV CCTTC 2 cut(s) 95, 679
HpyCH4III ACNGT 2 cut(s) 250, 822
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 6 cut(s) 152, 451, 529, 699, 706, 772
HpyF10VI GCNNNNNNNGC 3 cut(s) 375, 935, 944
HpyF3I CTNAG 4 cut(s) 47, 333, 645, 825
HpySE526I ACGT 1 cut(s) 444
Hsp92II CATG 5 cut(s) 152, 156, 209, 503, 541
Kzo9I GATC 4 cut(s) 34, 50, 514, 569
LguI GCTCTTC 2 cut(s) 215, 486
LmnI GCTCC 1 cut(s) 207
Lsp1109I GCAGC 6 cut(s) 25, 278, 479, 482, 510, 513
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 62
MalI GATC 4 cut(s) 36, 52, 516, 571
MboI GATC 4 cut(s) 34, 50, 514, 569
MboII GAAGA 8 cut(s) 11, 143, 232, 242, 430, 503, 623, 633
MflI RGATCY 2 cut(s) 34, 50
MlsI TGGCCA 1 cut(s) 726
MluCI AATT 8 cut(s) 25, 212, 241, 316, 459, 555, 755, 803
MluNI TGGCCA 1 cut(s) 726
MlyI GAGTC 1 cut(s) 656
MnlI CCTC 6 cut(s) 27, 84, 136, 285, 421, 883
Mox20I TGGCCA 1 cut(s) 726
Mph1103I ATGCAT 1 cut(s) 154
MscI TGGCCA 1 cut(s) 726
MseI TTAA 8 cut(s) 216, 240, 326, 486, 758, 801, 878, 932
MslI CAYNNNNRTG 2 cut(s) 153, 746
Msp20I TGGCCA 1 cut(s) 726
MspCI CTTAAG 1 cut(s) 877
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 1 cut(s) 914
MwoI GCNNNNNNNGC 3 cut(s) 375, 935, 944
NdeII GATC 4 cut(s) 34, 50, 514, 569
NlaIII CATG 5 cut(s) 152, 156, 209, 503, 541
NmuCI GTSAC 1 cut(s) 62
NsiI ATGCAT 1 cut(s) 154
NspI RCATGY 1 cut(s) 156
OliI CACNNNNGTG 1 cut(s) 746
PagI TCATGA 1 cut(s) 537
PciSI GCTCTTC 2 cut(s) 215, 486
PfeI GAWTC 1 cut(s) 348
PflMI CCANNNNNTGG 1 cut(s) 784
PkrI GCNGC 7 cut(s) 15, 268, 469, 472, 525, 528, 622
PleI GAGTC 1 cut(s) 656
PpsI GAGTC 1 cut(s) 656
PshBI ATTAAT 3 cut(s) 240, 486, 758
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PstNI CAGNNNCTG 1 cut(s) 784
PsuI RGATCY 2 cut(s) 34, 50
RsaI GTAC 2 cut(s) 252, 597
RsaNI GTAC 2 cut(s) 251, 596
RseI CAYNNNNRTG 2 cut(s) 153, 746
SapI GCTCTTC 2 cut(s) 215, 486
SaqAI TTAA 8 cut(s) 216, 240, 326, 486, 758, 801, 878, 932
SatI GCNGC 7 cut(s) 14, 267, 468, 471, 524, 527, 621
Sau3AI GATC 4 cut(s) 34, 50, 514, 569
SchI GAGTC 1 cut(s) 656
ScrFI CCNGG 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 818
SmiMI CAYNNNNRTG 2 cut(s) 153, 746
SmlI CTYRAG 1 cut(s) 877
SmoI CTYRAG 1 cut(s) 877
Sse9I AATT 8 cut(s) 25, 212, 241, 316, 459, 555, 755, 803
SsiI CCGC 4 cut(s) 367, 427, 621, 914
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 178
TaaI ACNGT 2 cut(s) 250, 822
TaiI ACGT 1 cut(s) 447
TaqI TCGA 2 cut(s) 413, 517
TaqII GACCGA 1 cut(s) 686
TasI AATT 8 cut(s) 25, 212, 241, 316, 459, 555, 755, 803
TatI WGTACW 1 cut(s) 595
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 1 cut(s) 348
Tru1I TTAA 8 cut(s) 216, 240, 326, 486, 758, 801, 878, 932
Tru9I TTAA 8 cut(s) 216, 240, 326, 486, 758, 801, 878, 932
TscAI CASTG 1 cut(s) 653
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 6 cut(s) 13, 266, 467, 470, 523, 526
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 7 cut(s) 155, 222, 294, 504, 600, 806, 944
TspGWI ACGGA 1 cut(s) 736
TspRI CASTG 1 cut(s) 653
Van91I CCANNNNNTGG 1 cut(s) 784
Vha464I CTTAAG 1 cut(s) 877
VspI ATTAAT 3 cut(s) 240, 486, 758
XapI RAATTY 2 cut(s) 212, 459
XbaI TCTAGA 1 cut(s) 5
XceI RCATGY 1 cut(s) 156
XspI CTAG 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.