Rorug03G0005000

Cullin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0017681
Physical Location & Seq
Reverse (-)
402811 .. 403273
463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0005000.1

Sequence Viewer

Length: 417 bp
ATGCGCAAGGTTTGTGCCTTGGAGCTCCTAAGTGCAAAGCGCGTGCAGTCGTTTTCATCATTGAGAGAAGAAGAGACATGGAATCTTGTTCAGTCAATTACTCAATTATCTTGTTCAGTCAATTACTCAAAGAGTTTAATTACATCATTGGTCCACGAAACGATTAGGCTTACTACAGGCTTTGGTGTGCCAGATCTGTTCCCTTCGCTCCAATTGCTCAATCATGTCACAGGGACCAAGTCTGCCGTTGAAAAACTGCATGGAAAGATGGACATGATTCTTGTTGATATTATCAATGATCATAAACAAGAAGATCAAGATCTGGTCGACGTGCTTCTACAACTTCAAGAGTCTGGTGAGCTCCAATTCCAACTCACAGCCAACCATATCAAAGCTGTAACCTTGTTAAGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04340 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04340 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Cullin

Protein Analysis

138

Amino Acids

15.56

Weight (kDa)

6.18

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017681)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g06190 FvH4_6g06190 FvH4_6g06190
rosa_chinensis RchiOBHm_Chr3g0455211
rosa_laevigata RLG00000025377
rosa_multiflora Rmu_sc0002169.1_g000031
rosa_roxburghii Rroxscaffold_6G00424470
rosa_rugosa Rorug03G0004900 Rorug03G0005000
rosa_samantha Rh3BG067400 Rh3CG065800
rosa_wichuraiana Rw3G005140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AccI GTMKAC 1 cut(s) 327
AccII CGCG 1 cut(s) 42
AgsI TTSAA 2 cut(s) 251, 347
AjiI CACGTC 1 cut(s) 331
AluBI AGCT 3 cut(s) 25, 361, 395
AluI AGCT 3 cut(s) 25, 361, 395
Alw21I GWGCWC 2 cut(s) 27, 363
Alw26I GTCTC 1 cut(s) 68
AspLEI GCGC 2 cut(s) 6, 42
AspS9I GGNCC 2 cut(s) 151, 234
AsuHPI GGTGA 1 cut(s) 368
AvaII GGWCC 2 cut(s) 151, 234
BanII GRGCYC 2 cut(s) 27, 363
Bbv12I GWGCWC 2 cut(s) 27, 363
BccI CCATC 1 cut(s) 262
BceAI ACGGC 1 cut(s) 230
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 174
BglII AGATCT 2 cut(s) 193, 319
Bme18I GGWCC 2 cut(s) 151, 234
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 2 cut(s) 151, 234
BmiI GGNNCC 1 cut(s) 235
BsaBI GATNNNNATC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 18
Bse8I GATNNNNATC 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 18
BseJI GATNNNNATC 1 cut(s) 318
BsgI GTGCAG 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 42
BsiHKAI GWGCWC 2 cut(s) 27, 363
BslFI GGGAC 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 247
Bsp1286I GDGCHC 2 cut(s) 27, 363
Bsp143I GATC 4 cut(s) 193, 298, 313, 319
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 4 cut(s) 193, 298, 313, 319
BssT1I CCWWGG 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 29
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 2 cut(s) 6, 42
BstKTI GATC 4 cut(s) 196, 301, 316, 322
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 4 cut(s) 193, 298, 313, 319
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 174
BstUI CGCG 1 cut(s) 42
BstX2I RGATCY 2 cut(s) 193, 319
BstYI RGATCY 2 cut(s) 193, 319
BtrI CACGTC 1 cut(s) 331
Cac8I GCNNGC 1 cut(s) 44
CfoI GCGC 2 cut(s) 6, 42
Cfr13I GGNCC 2 cut(s) 151, 234
CviAII CATG 4 cut(s) 78, 224, 260, 274
CviJI RGCY 6 cut(s) 25, 169, 180, 361, 380, 395
CviKI_1 RGCY 6 cut(s) 25, 169, 180, 361, 380, 395
DdeI CTNAG 1 cut(s) 29
DpnI GATC 4 cut(s) 195, 300, 315, 321
DpnII GATC 4 cut(s) 193, 298, 313, 319
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Ecl136II GAGCTC 2 cut(s) 25, 361
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 2 cut(s) 27, 363
Eco47I GGWCC 2 cut(s) 151, 234
Eco53kI GAGCTC 2 cut(s) 25, 361
EcoICRI GAGCTC 2 cut(s) 25, 361
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 2 cut(s) 27, 363
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 4 cut(s) 81, 227, 263, 277
FaiI YATR 6 cut(s) 79, 225, 261, 275, 303, 387
FaqI GGGAC 1 cut(s) 247
FatI CATG 4 cut(s) 77, 223, 259, 273
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 1 cut(s) 327
FriOI GRGCYC 2 cut(s) 27, 363
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 41
HhaI GCGC 2 cut(s) 6, 42
Hin1II CATG 4 cut(s) 81, 227, 263, 277
Hin6I GCGC 2 cut(s) 4, 40
HinP1I GCGC 2 cut(s) 4, 40
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 3 cut(s) 82, 277, 350
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 2 cut(s) 154, 328
Hpy188III TCNNGA 2 cut(s) 317, 347
Hpy8I GTNNAC 2 cut(s) 154, 328
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 1 cut(s) 213
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 3 cut(s) 35, 46, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 1 cut(s) 29
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 4 cut(s) 81, 227, 263, 277
HspAI GCGC 2 cut(s) 4, 40
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 4 cut(s) 193, 298, 313, 319
LmnI GCTCC 4 cut(s) 22, 30, 213, 366
LpnPI CCDG 5 cut(s) 162, 204, 216, 308, 339
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 2 cut(s) 226, 397
MalI GATC 4 cut(s) 195, 300, 315, 321
MboI GATC 4 cut(s) 193, 298, 313, 319
MboII GAAGA 3 cut(s) 80, 83, 323
MfeI CAATTG 1 cut(s) 212
MflI RGATCY 2 cut(s) 193, 319
MhlI GDGCHC 2 cut(s) 27, 363
MluCI AATT 6 cut(s) 96, 104, 121, 138, 212, 365
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 394
MseI TTAA 2 cut(s) 137, 407
MunI CAATTG 1 cut(s) 212
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 214
NdeII GATC 4 cut(s) 193, 298, 313, 319
NlaIII CATG 4 cut(s) 81, 227, 263, 277
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 226
NsbI TGCGCA 1 cut(s) 5
PfeI GAWTC 2 cut(s) 82, 277
PflFI GACNNNGTC 1 cut(s) 238
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
Psp124BI GAGCTC 2 cut(s) 27, 363
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 2 cut(s) 151, 234
PsuI RGATCY 2 cut(s) 193, 319
PsyI GACNNNGTC 1 cut(s) 238
SacI GAGCTC 2 cut(s) 27, 363
SalI GTCGAC 1 cut(s) 326
SaqAI TTAA 2 cut(s) 137, 407
Sau3AI GATC 4 cut(s) 193, 298, 313, 319
Sau96I GGNCC 2 cut(s) 151, 234
SchI GAGTC 1 cut(s) 359
SduI GDGCHC 2 cut(s) 27, 363
SetI ASST 6 cut(s) 12, 27, 333, 363, 397, 404
SfcI CTRYAG 1 cut(s) 174
SinI GGWCC 2 cut(s) 151, 234
Sse9I AATT 6 cut(s) 96, 104, 121, 138, 212, 365
SstI GAGCTC 2 cut(s) 27, 363
StyI CCWWGG 1 cut(s) 18
TaiI ACGT 1 cut(s) 333
TaqI TCGA 1 cut(s) 327
TasI AATT 6 cut(s) 96, 104, 121, 138, 212, 365
TfiI GAWTC 2 cut(s) 82, 277
Tru1I TTAA 2 cut(s) 137, 407
Tru9I TTAA 2 cut(s) 137, 407
TseFI GTSAC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 45
Tth111I GACNNNGTC 1 cut(s) 238
VpaK11BI GGWCC 2 cut(s) 151, 234
XmiI GTMKAC 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.