Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011573

Physical Location & Seq

Genomic Coordinates Reverse (-)

4402908 .. 4404023

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCAAACCAATCTGACCCAAGCACTACAAGCACAGATGATCTCAAGTTGTACCGGTGGGCAGCATGGGCCATCCCACCGGACAACATTTGTAAGAGGGTCAAACCGGTGATGGAAGCCCTCCGGAAGGAATTTGGAGGGCCGGAGATCAAGCCTCACATCACCGTTGCCGGGTCCTGTCTCTTCACTCGCTCAGATGCCATTGAGAAGTTCCAAACTGCATGCGGCTCTATAGATCCCTATGTGACAAAAGTCGACCAACTTGAGACTAGCAAGTTCTATTTCCAATCTGTTTCCCTCGTCTTTCAAACAGGTGAAGAGTTTGCAAGGGACACTGGACTTTTCGCTTCGCGAATGTATTGCAATAGTGCTAATATGCCACATTTGAGCTTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

133

Amino Acids

14.78

Weight (kDa)

6.08

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011573)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07330
rosa_chinensis	RchiOBHm_Chr3g0456941 RchiOBHm_Chr3g0457361
rosa_laevigata	RLG00000025232 RLG00000025262
rosa_multiflora	Rmu_sc0005442.1_g000007 Rmu_sc0011220.1_g000001 Rmu_sc0016008.1_g000002
rosa_roxburghii	Rroxscaffold_6G00421950 Rroxscaffold_6G00422350
rosa_rugosa	Rorug03G0017500 Rorug03G0020100
rosa_samantha	Rh3AG077500 Rh3AG080300 Rh3BG079400 Rh3BG082100 Rh3CG079300 Rh3CG082400 Rh3DG081100
rosa_wichuraiana	Rw3G006640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	1 cut(s)	352
AccIII	TCCGGA	1 cut(s)	123
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	127, 171
AgeI	ACCGGT	2 cut(s)	54, 106
AgsI	TTSAA	1 cut(s)	308
AluBI	AGCT	1 cut(s)	390
AluI	AGCT	1 cut(s)	390
Alw26I	GTCTC	2 cut(s)	185, 260
AlwI	GGATC	1 cut(s)	230
Aor13HI	TCCGGA	1 cut(s)	123
AoxI	GGCC	2 cut(s)	69, 140
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	131
AsiGI	ACCGGT	2 cut(s)	54, 106
AspS9I	GGNCC	3 cut(s)	69, 140, 174
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	3 cut(s)	121, 154, 326
AvaII	GGWCC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	2 cut(s)	80, 106
BcgI	CGANNNNNNTGC	2 cut(s)	342, 376
BcnI	CCSGG	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	185, 260
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	2 cut(s)	63, 226
BlsI	GCNGC	2 cut(s)	64, 227
Bme1390I	CCNGG	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	3 cut(s)	69, 140, 174
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	1 cut(s)	187
BoxI	GACNNNNGTC	1 cut(s)	251
BpuEI	CTTGAG	2 cut(s)	29, 284
BpuMI	CCSGG	1 cut(s)	172
BsaWI	WCCGGW	4 cut(s)	54, 79, 106, 123
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 171
Bse118I	RCCGGY	2 cut(s)	54, 106
Bse1I	ACTGG	1 cut(s)	340
BseAI	TCCGGA	1 cut(s)	123
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	2 cut(s)	127, 171
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	352
BshFI	GGCC	2 cut(s)	71, 142
BshTI	ACCGGT	2 cut(s)	54, 106
BsiSI	CCGG	6 cut(s)	55, 80, 107, 124, 143, 171
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	127, 171
BsmAI	GTCTC	2 cut(s)	185, 260
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	2 cut(s)	71, 142
Bsp13I	TCCGGA	1 cut(s)	123
Bsp143I	GATC	3 cut(s)	40, 147, 235
Bsp68I	TCGCGA	1 cut(s)	352
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	2 cut(s)	71, 142
BspCNI	CTCAG	1 cut(s)	206
BspEI	TCCGGA	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	175
BspPI	GGATC	1 cut(s)	230
BsrFI	RCCGGY	2 cut(s)	54, 106
BsrI	ACTGG	1 cut(s)	340
BssAI	RCCGGY	2 cut(s)	54, 106
BssMI	GATC	3 cut(s)	40, 147, 235
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	2 cut(s)	188, 312
BstC8I	GCNNGC	2 cut(s)	223, 392
BstDEI	CTNAG	1 cut(s)	193
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	352
BstKTI	GATC	3 cut(s)	43, 150, 238
BstMAI	GTCTC	2 cut(s)	185, 260
BstMBI	GATC	3 cut(s)	40, 147, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 68
BstNSI	RCATGY	1 cut(s)	225
BstPAI	GACNNNNGTC	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	71, 142
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	333
BtuMI	TCGCGA	1 cut(s)	352
Cac8I	GCNNGC	2 cut(s)	223, 392
Cfr10I	RCCGGY	2 cut(s)	54, 106
Cfr13I	GGNCC	3 cut(s)	69, 140, 174
Csp6I	GTAC	1 cut(s)	52
CspAI	ACCGGT	2 cut(s)	54, 106
CviAII	CATG	2 cut(s)	66, 222
CviJI	RGCY	6 cut(s)	71, 119, 142, 154, 228, 390
CviKI_1	RGCY	6 cut(s)	71, 119, 142, 154, 228, 390
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	193
DpnI	GATC	3 cut(s)	42, 149, 237
DpnII	GATC	3 cut(s)	40, 147, 235
Eam1104I	CTCTTC	2 cut(s)	188, 312
EarI	CTCTTC	2 cut(s)	188, 312
Eco47I	GGWCC	1 cut(s)	174
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	174
FaeI	CATG	2 cut(s)	69, 225
FaiI	YATR	5 cut(s)	67, 223, 233, 243, 377
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	2 cut(s)	65, 221
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	63, 226
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	63, 226
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	2 cut(s)	63, 226
HaeIII	GGCC	2 cut(s)	71, 142
HapII	CCGG	6 cut(s)	55, 80, 107, 124, 143, 171
Hin1II	CATG	2 cut(s)	69, 225
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HpaII	CCGG	6 cut(s)	55, 80, 107, 124, 143, 171
HphI	GGTGA	3 cut(s)	121, 154, 326
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	16, 196
Hpy188III	TCNNGA	2 cut(s)	124, 351
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	3 cut(s)	221, 326, 363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 68
HpyF3I	CTNAG	1 cut(s)	193
Hsp92II	CATG	2 cut(s)	69, 225
Kpn2I	TCCGGA	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	40, 147, 235
LpnPI	CCDG	9 cut(s)	68, 93, 120, 137, 156, 184, 190, 297, 321
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	3 cut(s)	42, 149, 237
MboI	GATC	3 cut(s)	40, 147, 235
MboII	GAAGA	2 cut(s)	175, 329
MflI	RGATCY	1 cut(s)	235
MluCI	AATT	1 cut(s)	131
MnlI	CCTC	5 cut(s)	90, 131, 131, 165, 308
MroI	TCCGGA	1 cut(s)	123
MspI	CCGG	6 cut(s)	55, 80, 107, 124, 143, 171
MspR9I	CCNGG	1 cut(s)	172
MvnI	CGCG	1 cut(s)	352
MwoI	GCNNNNNNNGC	2 cut(s)	30, 68
NciI	CCSGG	1 cut(s)	172
NdeII	GATC	3 cut(s)	40, 147, 235
NlaIII	CATG	2 cut(s)	69, 225
NlaIV	GGNNCC	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	244
NruI	TCGCGA	1 cut(s)	352
NspI	RCATGY	1 cut(s)	225
PaeI	GCATGC	1 cut(s)	225
PinAI	ACCGGT	2 cut(s)	54, 106
PkrI	GCNGC	2 cut(s)	64, 227
PpuMI	RGGWCCY	1 cut(s)	174
PshAI	GACNNNNGTC	1 cut(s)	251
Psp5II	RGGWCCY	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	3 cut(s)	69, 140, 174
PspPPI	RGGWCCY	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	235
RruI	TCGCGA	1 cut(s)	352
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SalI	GTCGAC	1 cut(s)	254
SatI	GCNGC	2 cut(s)	63, 226
Sau3AI	GATC	3 cut(s)	40, 147, 235
Sau96I	GGNCC	3 cut(s)	69, 140, 174
ScrFI	CCNGG	1 cut(s)	172
SetI	ASST	2 cut(s)	316, 392
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	1 cut(s)	231
SinI	GGWCC	1 cut(s)	174
SmlI	CTYRAG	2 cut(s)	44, 263
SmoI	CTYRAG	2 cut(s)	44, 263
SphI	GCATGC	1 cut(s)	225
Sse9I	AATT	1 cut(s)	131
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	1 cut(s)	255
TasI	AATT	1 cut(s)	131
TauI	GCSGC	1 cut(s)	228
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	244
TspRI	CASTG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	174
XagI	CCTNNNNNAGG	1 cut(s)	125
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.