Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011573

Physical Location & Seq

Genomic Coordinates Reverse (-)

1355326 .. 1357366

Gene Structure 2041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0017500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1653 bp

ATGCCGAAAAGTATTCTGATAACTTGTGTTCTTATTTGCTTTGCAATTTATCATGATGATGCCAAGGCAGAACAGCACTGTCCGCCAGCTTCTTGTGGGGATCTCCATGACATTAGGTACCCGTTTCGCTTGATTAGTAATGGTACTACCGTTAACAATTGTCTAGACTCTCCAGTTGAACTTTCATGTGAGCAGAATCGCACCACTTTAAAACTTTTCAATGGCACATATTATGTCATGGGAATCGATTATGAATTGCAGGCAATCCAGGTCGTGGATCCTGGTCTACTAAGTGATACTTGCCCCTTTAGGCCGAATCGCAGTTTGACAAGAGGAGACTTTAACATAGGCCTTGACCAAGAAGCTGACTACCGATCATATGTTAACGTCTCTGGTGGTCACCGACTATATTTTAACCGGGCTGGTGGTTATAGTTATGCAATGTTCTATGATTGCCGGTCGAAAGTTGAGCTCCAAAGCTACTATGGCTACATAAAAATTGATTGCAGTAATAGCTCATCGTCGTGGTTATATTCTTACATTAAGCTGGGAAATGATTTGTCTAATCTTAATGATTTGTCTGAACTTCTACAGTATTGTATTATGACCACCATCACCCTTTTCATGTTAGATGAACATGGTTATTCATTTTCATTTTCTTTCATCCGTGATGAGTTGAGAAAGGGTTTTCAACTTAATTGGTCCTCTCTTGTCCCTGCTAAGTACTGCTACAGCCGATTCCAGTCCCTCTATTGTTTTTGGAAATACTTGAGATACGAAACCTTCCTACATTTTGTACGAGCCCCCAAGATGATCCTCGGATTCAGTCTGACTGTACGAATGGCATTCAGCATCGATGTTTTGCTGTTTTTCTTGTTGTGCAAACTGTCTTGGAAAAAGATCCTGAAGGACGATGATAAGGCCGTTGAAGAATTCTTGGATGCATACAAGAATCTTATGCCAAGCAGGTATTCATATTCAGAAATTAAGACGGTGACGAATTCTTTCAAAGATAAACTTGGTCAGGGAGGTTTTGGTTCTGTTTATAAAGGAGAACTATCAAATGGTCATCTTGTCGCAGTAAAGATGTTGAATGATTCCAAAAGTAAAGGGCAAGATTTCATCAATGAAGTTGGCACAATAGGAAGAATTCATCATGTCAATGTGGTGCAACTAATTGGATTCTGTTCCGAGGGGTCTAAAAGAGCTCTTGTTTATGATTTCATGCCTAATGGATCCCTCGACAAATATATCTTGTGTGATGCAGAAAATAATCCTACTCTAAGTTGGGATAGAATGCATGAGATAGCTCTAGGGGTGGCTCGTGCAATTGAATATCTACACCAGGGATGTGATATTCAAATTCTACATTTTGATATTAAGCCCCACAACATTCTCCTTGATGAAAACTTTAATTCCAAAATTTCAGACTTTGGGCTTGCAAGATTTTACCCGAGAGATCAGAACACTATTTCTGTTACTGCAGCAAGAGGCACAAGGGGATATATAGCTCCAGAAATGTACTACAGAACTATTGGTGGTGTTTCCTACAAAGCTGATGTTTATAGCTTCGGAATGTTGTTAATGGAAATAGCAGGGAGGAGGAAAAACTTGAATCCAGAGCCAAATATACTTCCCTTCCTGGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

550

Amino Acids

62.95

Weight (kDa)

6.67

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	27 - 93	1e-12	Wall-associated receptor kinase galacturonan-binding
PK_Tyr_Ser-Thr	PF07714	336 - 532	3.8e-41	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	337 - 534	8.8e-43	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011573)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07330
rosa_chinensis	RchiOBHm_Chr3g0456941 RchiOBHm_Chr3g0457361
rosa_laevigata	RLG00000025232 RLG00000025262
rosa_multiflora	Rmu_sc0005442.1_g000007 Rmu_sc0011220.1_g000001 Rmu_sc0016008.1_g000002
rosa_roxburghii	Rroxscaffold_6G00421950 Rroxscaffold_6G00422350
rosa_rugosa	Rorug03G0017500 Rorug03G0020100
rosa_samantha	Rh3AG077500 Rh3AG080300 Rh3BG079400 Rh3BG082100 Rh3CG079300 Rh3CG082400 Rh3DG081100
rosa_wichuraiana	Rw3G006640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1047
Acc36I	ACCTGC	1 cut(s)	957
Acc65I	GGTACC	1 cut(s)	117
AccB1I	GGYRCC	1 cut(s)	117
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	286
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	7 cut(s)	108, 272, 285, 808, 895, 1230, 1243
AcsI	RAATTY	5 cut(s)	932, 1000, 1149, 1362, 1422
AcuI	CTGAAG	1 cut(s)	926
AfaI	GTAC	6 cut(s)	119, 145, 725, 798, 837, 1523
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	9 cut(s)	179, 220, 692, 929, 1009, 1093, 1334, 1361, 1615
AjnI	CCWGG	4 cut(s)	267, 280, 1344, 1641
AjuI	GAANNNNNNNTTGG	2 cut(s)	955, 987
Alw21I	GWGCWC	2 cut(s)	474, 1210
Alw26I	GTCTC	2 cut(s)	330, 394
AlwI	GGATC	7 cut(s)	108, 272, 285, 808, 895, 1230, 1243
Ama87I	CYCGRG	1 cut(s)	1453
AoxI	GGCC	3 cut(s)	311, 349, 921
ApeKI	GCWGC	1 cut(s)	1484
ApoI	RAATTY	5 cut(s)	932, 1000, 1149, 1362, 1422
Asp700I	GAANNNNTTC	1 cut(s)	1004
Asp718I	GGTACC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	702
AsuC2I	CCSGG	1 cut(s)	419
AsuHPI	GGTGA	3 cut(s)	392, 607, 1006
AvaI	CYCGRG	1 cut(s)	1453
AvaII	GGWCC	1 cut(s)	702
BaeI	ACNNNNGTAYC	2 cut(s)	135, 168
BamHI	GGATCC	2 cut(s)	277, 1235
BanI	GGYRCC	1 cut(s)	117
BanII	GRGCYC	3 cut(s)	474, 805, 1210
BauI	CACGAG	1 cut(s)	1323
Bbv12I	GWGCWC	2 cut(s)	474, 1210
BbvI	GCAGC	1 cut(s)	1496
BccI	CCATC	1 cut(s)	620
BceAI	ACGGC	1 cut(s)	908
BciT130I	CCWGG	4 cut(s)	269, 282, 1346, 1643
BcnI	CCSGG	1 cut(s)	419
BcoDI	GTCTC	2 cut(s)	330, 394
BfaI	CTAG	2 cut(s)	164, 1313
BfmI	CTRYAG	4 cut(s)	590, 730, 1482, 1525
BfuAI	ACCTGC	1 cut(s)	957
BisI	GCNGC	1 cut(s)	1485
BlsI	GCNGC	1 cut(s)	1486
BmcAI	AGTACT	1 cut(s)	725
Bme1390I	CCNGG	5 cut(s)	269, 282, 419, 1346, 1643
Bme18I	GGWCC	1 cut(s)	702
BmeT110I	CYCGRG	1 cut(s)	1453
BmgT120I	GGNCC	1 cut(s)	702
BmiI	GGNNCC	3 cut(s)	119, 279, 1237
BmrFI	CCNGG	5 cut(s)	269, 282, 419, 1346, 1643
BmsI	GCATC	4 cut(s)	49, 861, 931, 1252
BpmI	CTGGAG	2 cut(s)	156, 1497
BpuEI	CTTGAG	1 cut(s)	790
BpuMI	CCSGG	1 cut(s)	419
Bsa29I	ATCGAT	2 cut(s)	246, 855
BsaJI	CCNNGG	4 cut(s)	63, 817, 1191, 1345
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse118I	RCCGGY	1 cut(s)	456
Bse1I	ACTGG	2 cut(s)	173, 742
Bse3DI	GCAATG	1 cut(s)	447
BseBI	CCWGG	4 cut(s)	269, 282, 1346, 1643
BseCI	ATCGAT	2 cut(s)	246, 855
BseDI	CCNNGG	4 cut(s)	63, 817, 1191, 1345
BseGI	GGATG	3 cut(s)	663, 946, 1355
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMI	GCAATG	1 cut(s)	447
BseNI	ACTGG	2 cut(s)	173, 742
BseRI	GAGGAG	2 cut(s)	348, 1615
BseXI	GCAGC	1 cut(s)	1496
BseYI	CCCAGC	1 cut(s)	547
Bsh1285I	CGRYCG	1 cut(s)	461
BshFI	GGCC	3 cut(s)	313, 351, 923
BshNI	GGYRCC	1 cut(s)	117
BshVI	ATCGAT	2 cut(s)	246, 855
BsiEI	CGRYCG	1 cut(s)	461
BsiHKAI	GWGCWC	2 cut(s)	474, 1210
BsiHKCI	CYCGRG	1 cut(s)	1453
BsiSI	CCGG	2 cut(s)	418, 457
BslFI	GGGAC	2 cut(s)	698, 730
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	2 cut(s)	330, 394
BsmBI	CGTCTC	1 cut(s)	394
BsmFI	GGGAC	2 cut(s)	698, 730
BsmI	GAATGC	2 cut(s)	845, 1302
BsnI	GGCC	3 cut(s)	313, 351, 923
BsoBI	CYCGRG	1 cut(s)	1453
Bsp1286I	GDGCHC	3 cut(s)	474, 805, 1210
Bsp143I	GATC	7 cut(s)	100, 277, 374, 813, 900, 1235, 1459
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	3 cut(s)	313, 351, 923
BspDI	ATCGAT	2 cut(s)	246, 855
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	3 cut(s)	119, 279, 1237
BspMAI	CTGCAG	1 cut(s)	1486
BspMI	ACCTGC	1 cut(s)	957
BspPI	GGATC	7 cut(s)	108, 272, 285, 808, 895, 1230, 1243
BspT107I	GGYRCC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	456
BsrI	ACTGG	2 cut(s)	173, 742
BssAI	RCCGGY	1 cut(s)	456
BssECI	CCNNGG	4 cut(s)	63, 817, 1191, 1345
BssMI	GATC	7 cut(s)	100, 277, 374, 813, 900, 1235, 1459
BssSI	CACGAG	1 cut(s)	1323
BssT1I	CCWWGG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	1323
Bst2UI	CCWGG	4 cut(s)	269, 282, 1346, 1643
Bst4CI	ACNGT	6 cut(s)	80, 151, 594, 835, 888, 994
BstC8I	GCNNGC	3 cut(s)	87, 261, 1440
BstDEI	CTNAG	3 cut(s)	290, 720, 1283
BstEII	GGTNACC	1 cut(s)	398
BstF5I	GGATG	3 cut(s)	663, 946, 1355
BstKTI	GATC	7 cut(s)	103, 280, 377, 816, 903, 1238, 1462
BstMAI	GTCTC	2 cut(s)	330, 394
BstMBI	GATC	7 cut(s)	100, 277, 374, 813, 900, 1235, 1459
BstMCI	CGRYCG	1 cut(s)	461
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 486, 513
BstNI	CCWGG	4 cut(s)	269, 282, 1346, 1643
BstPI	GGTNACC	1 cut(s)	398
BstSCI	CCNGG	5 cut(s)	267, 280, 417, 1344, 1641
BstSFI	CTRYAG	4 cut(s)	590, 730, 1482, 1525
BstV1I	GCAGC	1 cut(s)	1496
BstX2I	RGATCY	4 cut(s)	100, 277, 900, 1235
BstYI	RGATCY	4 cut(s)	100, 277, 900, 1235
Bsu15I	ATCGAT	2 cut(s)	246, 855
BsuRI	GGCC	3 cut(s)	313, 351, 923
BsuTUI	ATCGAT	2 cut(s)	246, 855
BtsCI	GGATG	3 cut(s)	663, 946, 1355
BtsIMutI	CAGTG	1 cut(s)	76
BveI	ACCTGC	1 cut(s)	957
Cac8I	GCNNGC	3 cut(s)	87, 261, 1440
CciI	TCATGA	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	456
Cfr13I	GGNCC	1 cut(s)	702
ClaI	ATCGAT	2 cut(s)	246, 855
Csp6I	GTAC	6 cut(s)	118, 144, 724, 797, 836, 1522
CviAII	CATG	9 cut(s)	53, 107, 186, 238, 625, 638, 1157, 1225, 1301
CviQI	GTAC	6 cut(s)	118, 144, 724, 797, 836, 1522
DdeI	CTNAG	3 cut(s)	290, 720, 1283
DpnI	GATC	7 cut(s)	102, 279, 376, 815, 902, 1237, 1461
DpnII	GATC	7 cut(s)	100, 277, 374, 813, 900, 1235, 1459
DraI	TTTAAA	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	72
Ecl136II	GAGCTC	2 cut(s)	472, 1208
Eco130I	CCWWGG	1 cut(s)	63
Eco147I	AGGCCT	1 cut(s)	351
Eco24I	GRGCYC	3 cut(s)	474, 805, 1210
Eco47I	GGWCC	1 cut(s)	702
Eco53kI	GAGCTC	2 cut(s)	472, 1208
Eco57I	CTGAAG	1 cut(s)	926
Eco88I	CYCGRG	1 cut(s)	1453
Eco91I	GGTNACC	1 cut(s)	398
EcoICRI	GAGCTC	2 cut(s)	472, 1208
EcoO65I	GGTNACC	1 cut(s)	398
EcoRI	GAATTC	3 cut(s)	932, 1000, 1149
EcoRII	CCWGG	4 cut(s)	267, 280, 1344, 1641
EcoT14I	CCWWGG	1 cut(s)	63
EcoT22I	ATGCAT	2 cut(s)	946, 1302
EcoT38I	GRGCYC	3 cut(s)	474, 805, 1210
ErhI	CCWWGG	1 cut(s)	63
Esp3I	CGTCTC	1 cut(s)	394
FaeI	CATG	9 cut(s)	56, 110, 189, 241, 628, 641, 1160, 1228, 1304
FalI	AAGNNNNNCTT	4 cut(s)	283, 315, 1002, 1034
FaqI	GGGAC	2 cut(s)	698, 730
FatI	CATG	9 cut(s)	52, 106, 185, 237, 624, 637, 1156, 1224, 1300
FauNDI	CATATG	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	1485
FokI	GGATG	3 cut(s)	650, 953, 1362
FriOI	GRGCYC	3 cut(s)	474, 805, 1210
Fsp4HI	GCNGC	1 cut(s)	1485
FspBI	CTAG	2 cut(s)	164, 1313
GluI	GCNGC	1 cut(s)	1485
GsaI	CCCAGC	1 cut(s)	551
GsuI	CTGGAG	2 cut(s)	156, 1497
HaeIII	GGCC	3 cut(s)	313, 351, 923
HapII	CCGG	2 cut(s)	418, 457
Hin1II	CATG	9 cut(s)	56, 110, 189, 241, 628, 641, 1160, 1228, 1304
HincII	GTYRAC	2 cut(s)	154, 385
HindII	GTYRAC	2 cut(s)	154, 385
HpaI	GTTAAC	2 cut(s)	154, 385
HpaII	CCGG	2 cut(s)	418, 457
HphI	GGTGA	3 cut(s)	392, 607, 1006
Hpy166II	GTNNAC	3 cut(s)	154, 287, 385
Hpy188I	TCNGA	9 cut(s)	18, 583, 821, 831, 982, 1192, 1429, 1464, 1574
Hpy188III	TCNNGA	5 cut(s)	53, 164, 904, 1514, 1619
Hpy8I	GTNNAC	3 cut(s)	154, 287, 385
Hpy99I	CGWCG	1 cut(s)	526
HpyAV	CCTTC	3 cut(s)	793, 901, 1648
HpyCH4III	ACNGT	6 cut(s)	80, 151, 594, 835, 888, 994
HpyCH4IV	ACGT	1 cut(s)	387
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 486, 513
HpyF3I	CTNAG	3 cut(s)	290, 720, 1283
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	9 cut(s)	56, 110, 189, 241, 628, 641, 1160, 1228, 1304
KpnI	GGTACC	1 cut(s)	121
KspAI	GTTAAC	2 cut(s)	154, 385
Kzo9I	GATC	7 cut(s)	100, 277, 374, 813, 900, 1235, 1459
LmnI	GCTCC	2 cut(s)	477, 1516
Lsp1109I	GCAGC	1 cut(s)	1496
LweI	GCATC	4 cut(s)	49, 861, 931, 1252
MaeI	CTAG	2 cut(s)	164, 1313
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	3 cut(s)	398, 994, 1477
MalI	GATC	7 cut(s)	102, 279, 376, 815, 902, 1237, 1461
MboI	GATC	7 cut(s)	100, 277, 374, 813, 900, 1235, 1459
MboII	GAAGA	2 cut(s)	941, 1158
MfeI	CAATTG	2 cut(s)	157, 1329
MflI	RGATCY	4 cut(s)	100, 277, 900, 1235
MhlI	GDGCHC	3 cut(s)	474, 805, 1210
MlyI	GAGTC	1 cut(s)	161
Mph1103I	ATGCAT	2 cut(s)	946, 1302
MroXI	GAANNNNTTC	1 cut(s)	1004
MslI	CAYNNNNRTG	3 cut(s)	57, 523, 1161
MspI	CCGG	2 cut(s)	418, 457
MspR9I	CCNGG	5 cut(s)	269, 282, 419, 1346, 1643
MunI	CAATTG	2 cut(s)	157, 1329
Mva1269I	GAATGC	2 cut(s)	845, 1302
MvaI	CCWGG	4 cut(s)	269, 282, 1346, 1643
MwoI	GCNNNNNNNGC	3 cut(s)	82, 486, 513
NciI	CCSGG	1 cut(s)	419
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	7 cut(s)	100, 277, 374, 813, 900, 1235, 1459
NlaIII	CATG	9 cut(s)	56, 110, 189, 241, 628, 641, 1160, 1228, 1304
NlaIV	GGNNCC	3 cut(s)	119, 279, 1237
NmuCI	GTSAC	2 cut(s)	398, 994
NsiI	ATGCAT	2 cut(s)	946, 1302
PagI	TCATGA	1 cut(s)	52
PceI	AGGCCT	1 cut(s)	351
PctI	GAATGC	2 cut(s)	845, 1302
PdmI	GAANNNNTTC	1 cut(s)	1004
PfeI	GAWTC	9 cut(s)	196, 243, 316, 738, 822, 952, 1097, 1182, 1615
PflMI	CCANNNNNTGG	1 cut(s)	274
PfoI	TCCNGGA	1 cut(s)	1641
PkrI	GCNGC	1 cut(s)	1486
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PsiI	TTATAA	1 cut(s)	1047
Psp124BI	GAGCTC	2 cut(s)	474, 1210
Psp6I	CCWGG	4 cut(s)	267, 280, 1344, 1641
PspEI	GGTNACC	1 cut(s)	398
PspFI	CCCAGC	1 cut(s)	547
PspGI	CCWGG	4 cut(s)	267, 280, 1344, 1641
PspN4I	GGNNCC	3 cut(s)	119, 279, 1237
PspPI	GGNCC	1 cut(s)	702
PstI	CTGCAG	1 cut(s)	1486
PsuI	RGATCY	4 cut(s)	100, 277, 900, 1235
RsaI	GTAC	6 cut(s)	119, 145, 725, 798, 837, 1523
RsaNI	GTAC	6 cut(s)	118, 144, 724, 797, 836, 1522
RseI	CAYNNNNRTG	3 cut(s)	57, 523, 1161
SacI	GAGCTC	2 cut(s)	474, 1210
SatI	GCNGC	1 cut(s)	1485
Sau3AI	GATC	7 cut(s)	100, 277, 374, 813, 900, 1235, 1459
Sau96I	GGNCC	1 cut(s)	702
ScaI	AGTACT	1 cut(s)	725
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	5 cut(s)	269, 282, 419, 1346, 1643
SduI	GDGCHC	3 cut(s)	474, 805, 1210
SfaNI	GCATC	4 cut(s)	49, 861, 931, 1252
SfcI	CTRYAG	4 cut(s)	590, 730, 1482, 1525
SinI	GGWCC	1 cut(s)	702
SmiMI	CAYNNNNRTG	3 cut(s)	57, 523, 1161
SmlI	CTYRAG	1 cut(s)	769
SmoI	CTYRAG	1 cut(s)	769
SseBI	AGGCCT	1 cut(s)	351
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	2 cut(s)	164, 1313
SstI	GAGCTC	2 cut(s)	474, 1210
StuI	AGGCCT	1 cut(s)	351
StyD4I	CCNGG	5 cut(s)	267, 280, 417, 1344, 1641
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	6 cut(s)	80, 151, 594, 835, 888, 994
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	4 cut(s)	246, 461, 855, 1242
TatI	WGTACW	2 cut(s)	723, 1521
TfiI	GAWTC	9 cut(s)	196, 243, 316, 738, 822, 952, 1097, 1182, 1615
TscAI	CASTG	1 cut(s)	83
TseFI	GTSAC	2 cut(s)	398, 994
TseI	GCWGC	1 cut(s)	1484
Tsp45I	GTSAC	2 cut(s)	398, 994
TspGWI	ACGGA	1 cut(s)	656
TspRI	CASTG	1 cut(s)	83
Van91I	CCANNNNNTGG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	702
XapI	RAATTY	5 cut(s)	932, 1000, 1149, 1362, 1422
XbaI	TCTAGA	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	482
XmiI	GTMKAC	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	1004
XspI	CTAG	2 cut(s)	164, 1313
ZrmI	AGTACT	1 cut(s)	725
Zsp2I	ATGCAT	2 cut(s)	946, 1302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.