Rorug03G0020100

Cyclic phosphodiesterase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011573
Physical Location & Seq
Reverse (-)
1591504 .. 1595260
3757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0020100.1

Sequence Viewer

Length: 1398 bp
ATGAGATGGTATAATAAGCCAATTGATTCGCATTCTCTGATTGACTGTGCCTCTTCTTCTCCGGCGATTTTCCGGCGAAAGATGAGCGAAGAAGAAAACGCCGGCGAGCTTCTGAATCAGTTCGAACAGATTTTGGAGTCCGATCCTGCAATTGATGAGATTGGATTTGTTCATCCATCCATGTTTGTCAACTTGAATGAAGAGGCATCCTCATCATCTGATGGTATTAGTAATGTGGTGTGCTCAGCAGATGGGAGTGCAGTGTTTTGGAATAGGGATCATAAGTTGGGAATTTCGACGGATGTTCTTATTCCATTATATAAGGAAGCTAAGCGCGCGCTGATGGCAGCAAATCGACAATATAAGGGAGTTAATAGCACATCTGATGTAACTGGGATTGAGAGTTCTGTATGTGACTCATTATCGTTGGGTAACAGTGTTGAAAGTGAAGTCATGAAGCATAGCAGGGCTGTTTTGTTAGTGAGTTCTGATTTTGGCACTGCTTGGCATTCCAGGAAGATGGTGTTGTTAAAGAAGCAAGAGCTCTCAATATTATTGGATGAACTTCTATTCTCAGCGCTTGTTCTTTCATATGCACCTAAATCGGAGCATGCTTGGAGCCACAGGCGATGGGTTATCAAGTTAATTGCTGGAAAGTGTTCAACTTTGCAAGAGATTGTCACCAAAGAGTCTGAGCTGGTGGAGAAAATAGCTGAGAGGTCAAAAATGAATTACCGTGCATGGTATCATCGTTGCTGGTTGGTGACCTACATGACAACAGAGCTGTCTCTACATGAATTAAAGAGATCTAAAAACTGGGCTGGCTTGCATGTCGCTGACCATAGTTGCTTCCATTATCGCAGACAGCTAATGCTTAGGATTTTAGAGGACAGATGCTGTAAACAAGAAAATGTAGCTTCTAGTTATAGTGTTAAAATAAATCAATTGTGGAAGGAGGAGCTTGAATGGAATGAAACGTTGATAAAGCGCTACATAGGAAGAGAGGCTCTATGGCTTCATCGACGGTTCCTATCCTTATTATGGATAAAACATTTTTTAACTGGTCACACGGGTCTGCCTGGGGATTGGAAGCACAAAACCAGCATGAATAATGACTTTGGTATCTTTGTGGATAATGAGTTGCATCTCCTGCAGTCCTGCTCCATCATTCCAGATGATGATTTTGATGATTACCAAGCACAGGCTACATATTCTACTACTTACATGTTATGGTTAATTAAGCAAATCCCTGATTCTGGTGGCGTTGAATTTCGGGAGAATCTAAGAACCAGAAACTTGAAAGCCCTGCTGAACAAGGCATGCCCTGAAAGGTCCTCAACTTGGGATTCTATAATGGCCTATGTCGAAACATCCGACCATTATGCAAAAGAGAGTTAG

Protein Analysis

465

Amino Acids

53.53

Weight (kDa)

6.33

Isoelectric Point (pI)

57.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPTA PF01239 186 - 214 1.5e-06 Protein prenyltransferase alpha subunit repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 336, 338
AclI AACGTT 1 cut(s) 977
AclWI GGATC 2 cut(s) 137, 285
AcsI RAATTY 2 cut(s) 291, 1268
AfeI AGCGCT 2 cut(s) 579, 989
AfiI CCNNNNNNNGG 4 cut(s) 1041, 1201, 1256, 1341
AflIII ACRYGT 1 cut(s) 1224
AgsI TTSAA 6 cut(s) 196, 443, 663, 965, 1268, 1300
AjnI CCWGG 2 cut(s) 512, 1078
AloI GAACNNNNNNTCC 2 cut(s) 388, 420
AluBI AGCT 9 cut(s) 109, 329, 544, 697, 713, 784, 868, 917, 961
AluI AGCT 9 cut(s) 109, 329, 544, 697, 713, 784, 868, 917, 961
Alw21I GWGCWC 2 cut(s) 245, 546
Alw26I GTCTC 1 cut(s) 792
AlwI GGATC 2 cut(s) 137, 285
AlwNI CAGNNNCTG 1 cut(s) 897
Aor51HI AGCGCT 2 cut(s) 579, 989
AoxI GGCC 1 cut(s) 1356
ApeKI GCWGC 1 cut(s) 347
ApoI RAATTY 2 cut(s) 291, 1268
Asp700I GAANNNNTTC 2 cut(s) 119, 658
AspLEI GCGC 5 cut(s) 336, 338, 340, 580, 990
AspS9I GGNCC 1 cut(s) 1332
AsuHPI GGTGA 2 cut(s) 673, 775
AsuII TTCGAA 1 cut(s) 123
AvaII GGWCC 1 cut(s) 1332
BaeI ACNNNNGTAYC 2 cut(s) 1105, 1138
BanII GRGCYC 1 cut(s) 546
Bbv12I GWGCWC 2 cut(s) 245, 546
BbvI GCAGC 1 cut(s) 359
BccI CCATC 7 cut(s) 184, 215, 245, 337, 514, 624, 1172
BcgI CGANNNNNNTGC 4 cut(s) 585, 619, 1364, 1398
BciT130I CCWGG 2 cut(s) 514, 1080
BcoDI GTCTC 1 cut(s) 792
BfaI CTAG 1 cut(s) 921
BfmI CTRYAG 1 cut(s) 1151
BfoI RGCGCY 2 cut(s) 581, 991
BglII AGATCT 1 cut(s) 806
BisI GCNGC 1 cut(s) 348
BlpI GCTNAGC 2 cut(s) 244, 330
BlsI GCNGC 1 cut(s) 349
Bme1390I CCNGG 2 cut(s) 514, 1080
Bme18I GGWCC 1 cut(s) 1332
BmgT120I GGNCC 1 cut(s) 1332
BmiI GGNNCC 2 cut(s) 620, 1028
BmrFI CCNGG 2 cut(s) 514, 1080
BmrI ACTGGG 2 cut(s) 402, 826
BmsI GCATC 3 cut(s) 215, 884, 1153
BmuI ACTGGG 2 cut(s) 402, 826
BplI GAGNNNNNCTC 2 cut(s) 194, 226
Bpu10I CCTNAGC 1 cut(s) 875
Bpu1102I GCTNAGC 2 cut(s) 244, 330
Bpu14I TTCGAA 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 1079
Bsc4I CCNNNNNNNGG 4 cut(s) 1041, 1201, 1256, 1341
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 3 cut(s) 397, 821, 1066
BseBI CCWGG 2 cut(s) 514, 1080
BseDI CCNNGG 1 cut(s) 1079
BseGI GGATG 6 cut(s) 172, 176, 206, 307, 565, 1370
BseLI CCNNNNNNNGG 4 cut(s) 1041, 1201, 1256, 1341
BseMII CTCAG 4 cut(s) 258, 588, 684, 705
BseNI ACTGG 3 cut(s) 397, 821, 1066
BsePI GCGCGC 2 cut(s) 334, 336
BseRI GAGGAG 1 cut(s) 971
BseXI GCAGC 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 279
Bsh1236I CGCG 2 cut(s) 336, 338
BshFI GGCC 1 cut(s) 1358
BsiHKAI GWGCWC 2 cut(s) 245, 546
BsiSI CCGG 3 cut(s) 62, 73, 102
BslI CCNNNNNNNGG 4 cut(s) 1041, 1201, 1256, 1341
BsmAI GTCTC 1 cut(s) 792
BsmI GAATGC 2 cut(s) 31, 508
BsnI GGCC 1 cut(s) 1358
Bsp119I TTCGAA 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 245, 546
Bsp143I GATC 3 cut(s) 142, 277, 806
Bsp1720I GCTNAGC 2 cut(s) 244, 330
BspANI GGCC 1 cut(s) 1358
BspCNI CTCAG 4 cut(s) 257, 587, 685, 706
BspFNI CGCG 2 cut(s) 336, 338
BspHI TCATGA 1 cut(s) 453
BspLI GGNNCC 2 cut(s) 620, 1028
BspMAI CTGCAG 1 cut(s) 1155
BspPI GGATC 2 cut(s) 137, 285
BspT104I TTCGAA 1 cut(s) 123
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 3 cut(s) 397, 821, 1066
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 1079
BssHII GCGCGC 2 cut(s) 334, 336
BssMI GATC 3 cut(s) 142, 277, 806
Bst2UI CCWGG 2 cut(s) 514, 1080
Bst4CI ACNGT 4 cut(s) 47, 437, 737, 1026
Bst6I CTCTTC 3 cut(s) 58, 195, 994
BstAPI GCANNNNNTGC 1 cut(s) 1150
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 8 cut(s) 103, 107, 336, 338, 612, 823, 827, 1321
BstDEI CTNAG 7 cut(s) 244, 330, 574, 693, 714, 875, 1283
BstEII GGTNACC 1 cut(s) 763
BstF5I GGATG 6 cut(s) 172, 176, 206, 307, 565, 1370
BstFNI CGCG 2 cut(s) 336, 338
BstH2I RGCGCY 2 cut(s) 581, 991
BstHHI GCGC 5 cut(s) 336, 338, 340, 580, 990
BstKTI GATC 3 cut(s) 145, 280, 809
BstMAI GTCTC 1 cut(s) 792
BstMBI GATC 3 cut(s) 142, 277, 806
BstMWI GCNNNNNNNGC 3 cut(s) 335, 344, 1150
BstNI CCWGG 2 cut(s) 514, 1080
BstNSI RCATGY 4 cut(s) 614, 833, 1228, 1323
BstPI GGTNACC 1 cut(s) 763
BstSCI CCNGG 2 cut(s) 512, 1078
BstSFI CTRYAG 1 cut(s) 1151
BstUI CGCG 2 cut(s) 336, 338
BstV1I GCAGC 1 cut(s) 359
BstX2I RGATCY 1 cut(s) 806
BstXI CCANNNNNNTGG 1 cut(s) 520
BstYI RGATCY 1 cut(s) 806
BsuRI GGCC 1 cut(s) 1358
BtgZI GCGATG 1 cut(s) 643
BtsCI GGATG 6 cut(s) 172, 176, 206, 307, 565, 1370
BtsI GCAGTG 2 cut(s) 267, 498
BtsIMutI CAGTG 3 cut(s) 267, 442, 498
Cac8I GCNNGC 8 cut(s) 103, 107, 336, 338, 612, 823, 827, 1321
CaiI CAGNNNCTG 1 cut(s) 897
CciI TCATGA 1 cut(s) 453
CfoI GCGC 5 cut(s) 336, 338, 340, 580, 990
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 1332
DdeI CTNAG 7 cut(s) 244, 330, 574, 693, 714, 875, 1283
DpnI GATC 3 cut(s) 144, 279, 808
DpnII GATC 3 cut(s) 142, 277, 806
Eam1104I CTCTTC 3 cut(s) 58, 195, 994
EarI CTCTTC 3 cut(s) 58, 195, 994
Ecl136II GAGCTC 1 cut(s) 544
Eco24I GRGCYC 1 cut(s) 546
Eco47I GGWCC 1 cut(s) 1332
Eco47III AGCGCT 2 cut(s) 579, 989
Eco53kI GAGCTC 1 cut(s) 544
Eco91I GGTNACC 1 cut(s) 763
EcoICRI GAGCTC 1 cut(s) 544
EcoO109I RGGNCCY 1 cut(s) 1332
EcoO65I GGTNACC 1 cut(s) 763
EcoRII CCWGG 2 cut(s) 512, 1078
EcoT38I GRGCYC 1 cut(s) 546
FauNDI CATATG 1 cut(s) 592
Fnu4HI GCNGC 1 cut(s) 348
FokI GGATG 6 cut(s) 159, 163, 193, 314, 572, 1357
FriOI GRGCYC 1 cut(s) 546
Fsp4HI GCNGC 1 cut(s) 348
FspBI CTAG 1 cut(s) 921
GlaI GCGC 5 cut(s) 335, 337, 339, 579, 989
GluI GCNGC 1 cut(s) 348
HaeII RGCGCY 2 cut(s) 581, 991
HaeIII GGCC 1 cut(s) 1358
HapII CCGG 3 cut(s) 62, 73, 102
HhaI GCGC 5 cut(s) 336, 338, 340, 580, 990
Hin6I GCGC 5 cut(s) 334, 336, 338, 578, 988
HinP1I GCGC 5 cut(s) 334, 336, 338, 578, 988
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 8 cut(s) 26, 115, 137, 416, 689, 1253, 1279, 1346
HpaII CCGG 3 cut(s) 62, 73, 102
HphI GGTGA 2 cut(s) 673, 775
Hpy166II GTNNAC 2 cut(s) 190, 902
Hpy188I TCNGA 9 cut(s) 39, 114, 142, 220, 385, 490, 607, 694, 1375
Hpy188III TCNNGA 3 cut(s) 454, 1172, 1274
Hpy8I GTNNAC 2 cut(s) 190, 902
Hpy99I CGWCG 2 cut(s) 301, 1026
HpyAV CCTTC 1 cut(s) 946
HpyCH4III ACNGT 4 cut(s) 47, 437, 737, 1026
HpyCH4IV ACGT 1 cut(s) 977
HpyCH4V TGCA 9 cut(s) 149, 260, 596, 670, 740, 829, 1144, 1153, 1385
HpyF10VI GCNNNNNNNGC 3 cut(s) 335, 344, 1150
HpyF3I CTNAG 7 cut(s) 244, 330, 574, 693, 714, 875, 1283
HpySE526I ACGT 1 cut(s) 977
HspAI GCGC 5 cut(s) 334, 336, 338, 578, 988
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Kzo9I GATC 3 cut(s) 142, 277, 806
LmnI GCTCC 4 cut(s) 607, 618, 958, 1166
Lsp1109I GCAGC 1 cut(s) 359
LweI GCATC 3 cut(s) 215, 884, 1153
MaeI CTAG 1 cut(s) 921
MaeII ACGT 1 cut(s) 977
MaeIII GTNAC 6 cut(s) 388, 413, 431, 679, 763, 1064
MalI GATC 3 cut(s) 144, 279, 808
MboI GATC 3 cut(s) 142, 277, 806
MboII GAAGA 7 cut(s) 45, 48, 101, 104, 212, 529, 1011
MfeI CAATTG 3 cut(s) 21, 150, 944
MflI RGATCY 1 cut(s) 806
MhlI GDGCHC 2 cut(s) 245, 546
MluCI AATT 9 cut(s) 21, 150, 291, 645, 730, 797, 944, 1236, 1268
MlyI GAGTC 3 cut(s) 146, 410, 698
MmeI TCCRAC 1 cut(s) 1398
MnlI CCTC 8 cut(s) 61, 196, 220, 711, 880, 949, 997, 1345
MreI CGCCGGCG 1 cut(s) 101
MroNI GCCGGC 1 cut(s) 101
MroXI GAANNNNTTC 2 cut(s) 119, 658
MseI TTAA 8 cut(s) 372, 530, 644, 800, 933, 1058, 1235, 1239
MspI CCGG 3 cut(s) 62, 73, 102
MspR9I CCNGG 2 cut(s) 514, 1080
MunI CAATTG 3 cut(s) 21, 150, 944
Mva1269I GAATGC 2 cut(s) 31, 508
MvaI CCWGG 2 cut(s) 514, 1080
MvnI CGCG 2 cut(s) 336, 338
MwoI GCNNNNNNNGC 3 cut(s) 335, 344, 1150
NaeI GCCGGC 1 cut(s) 103
NdeI CATATG 1 cut(s) 592
NdeII GATC 3 cut(s) 142, 277, 806
NgoMIV GCCGGC 1 cut(s) 101
NlaIV GGNNCC 2 cut(s) 620, 1028
NmuCI GTSAC 4 cut(s) 413, 679, 763, 1064
NspI RCATGY 4 cut(s) 614, 833, 1228, 1323
NspV TTCGAA 1 cut(s) 123
PacI TTAATTAA 1 cut(s) 1239
PaeI GCATGC 2 cut(s) 614, 1323
PagI TCATGA 1 cut(s) 453
PauI GCGCGC 2 cut(s) 334, 336
PciI ACATGT 1 cut(s) 1224
PcsI WCGNNNNNNNCGW 1 cut(s) 1371
PctI GAATGC 2 cut(s) 31, 508
PdiI GCCGGC 1 cut(s) 103
PdmI GAANNNNTTC 2 cut(s) 119, 658
PfeI GAWTC 5 cut(s) 26, 115, 1253, 1279, 1346
PfoI TCCNGGA 1 cut(s) 512
PkrI GCNGC 1 cut(s) 349
PleI GAGTC 3 cut(s) 145, 410, 697
PpsI GAGTC 3 cut(s) 145, 410, 697
PpuMI RGGWCCY 1 cut(s) 1332
PscI ACATGT 1 cut(s) 1224
Psp124BI GAGCTC 1 cut(s) 546
Psp1406I AACGTT 1 cut(s) 977
Psp5II RGGWCCY 1 cut(s) 1332
Psp6I CCWGG 2 cut(s) 512, 1078
PspEI GGTNACC 1 cut(s) 763
PspGI CCWGG 2 cut(s) 512, 1078
PspN4I GGNNCC 2 cut(s) 620, 1028
PspPI GGNCC 1 cut(s) 1332
PspPPI RGGWCCY 1 cut(s) 1332
PstI CTGCAG 1 cut(s) 1155
PstNI CAGNNNCTG 1 cut(s) 897
PsuI RGATCY 1 cut(s) 806
PteI GCGCGC 2 cut(s) 334, 336
SacI GAGCTC 1 cut(s) 546
SaqAI TTAA 8 cut(s) 372, 530, 644, 800, 933, 1058, 1235, 1239
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 3 cut(s) 142, 277, 806
Sau96I GGNCC 1 cut(s) 1332
SchI GAGTC 3 cut(s) 146, 410, 698
ScrFI CCNGG 2 cut(s) 514, 1080
SduI GDGCHC 2 cut(s) 245, 546
SfaNI GCATC 3 cut(s) 215, 884, 1153
SfcI CTRYAG 1 cut(s) 1151
SfuI TTCGAA 1 cut(s) 123
SgrAI CRCCGGYG 1 cut(s) 101
SinI GGWCC 1 cut(s) 1332
SphI GCATGC 2 cut(s) 614, 1323
Sse9I AATT 9 cut(s) 21, 150, 291, 645, 730, 797, 944, 1236, 1268
SspI AATATT 1 cut(s) 552
SspMI CTAG 1 cut(s) 921
SstI GAGCTC 1 cut(s) 546
StyD4I CCNGG 2 cut(s) 512, 1078
TaaI ACNGT 4 cut(s) 47, 437, 737, 1026
TaiI ACGT 1 cut(s) 980
TaqI TCGA 5 cut(s) 123, 296, 355, 1021, 1365
TasI AATT 9 cut(s) 21, 150, 291, 645, 730, 797, 944, 1236, 1268
TfiI GAWTC 5 cut(s) 26, 115, 1253, 1279, 1346
Tru1I TTAA 8 cut(s) 372, 530, 644, 800, 933, 1058, 1235, 1239
Tru9I TTAA 8 cut(s) 372, 530, 644, 800, 933, 1058, 1235, 1239
TscAI CASTG 3 cut(s) 267, 442, 505
TseFI GTSAC 4 cut(s) 413, 679, 763, 1064
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 4 cut(s) 413, 679, 763, 1064
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 3 cut(s) 267, 442, 505
VpaK11BI GGWCC 1 cut(s) 1332
XapI RAATTY 2 cut(s) 291, 1268
XceI RCATGY 4 cut(s) 614, 833, 1228, 1323
XmnI GAANNNNTTC 2 cut(s) 119, 658
XspI CTAG 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.