Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011220.1

Orthogroup ID

OG0011573

Physical Location & Seq

Genomic Coordinates Reverse (-)

1976 .. 3624

Gene Structure 1649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011220.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggcaaaccaatctgaaccaagcactgctaccagcacagatgatctgaagttgcaccggtgggcggtatgggccatcccaccggatagcatttgtaagagagttaaaacggtgatggaggccctccggaaagaatttggtgggtctgaggtcgagccccacatcaccgttgcggggtccattctcttcaatcgctcagaggccattgagaagttcatcggtgcatgtaatgagataaacccctatgtttgtcaagtcgatcaacttgagactagcaaattctacttccaatgtgtttccctagtctttcagacagatcatcagttaacacaggaaactggactcctcgctgggcgtatgtattgcaatagtggtaatatgccacatctgaatctcctttatggggagctgacagatgaagagaagaaaagtgctcaaggaaaagttagtgttctggatgagaccattaccagcctcaatttcaccatagatcgccttgcgcgcactgtacaaatgtcacgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

174

Amino Acids

19.52

Weight (kDa)

5.38

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011573)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07330
rosa_chinensis	RchiOBHm_Chr3g0456941 RchiOBHm_Chr3g0457361
rosa_laevigata	RLG00000025232 RLG00000025262
rosa_multiflora	Rmu_sc0005442.1_g000007 Rmu_sc0011220.1_g000001 Rmu_sc0016008.1_g000002
rosa_roxburghii	Rroxscaffold_6G00421950 Rroxscaffold_6G00422350
rosa_rugosa	Rorug03G0017500 Rorug03G0020100
rosa_samantha	Rh3AG077500 Rh3AG080300 Rh3BG079400 Rh3BG082100 Rh3CG079300 Rh3CG082400 Rh3DG081100
rosa_wichuraiana	Rw3G006640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	502
AccIII	TCCGGA	1 cut(s)	126
AciI	CCGC	2 cut(s)	65, 173
AcsI	RAATTY	2 cut(s)	134, 278
AcuI	CTGAAG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	510
AfiI	CCNNNNNNNGG	3 cut(s)	64, 174, 403
AgeI	ACCGGT	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	190
AluBI	AGCT	1 cut(s)	409
AluI	AGCT	1 cut(s)	409
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	2 cut(s)	263, 455
Aor13HI	TCCGGA	1 cut(s)	126
AoxI	GGCC	3 cut(s)	72, 120, 201
ApoI	RAATTY	2 cut(s)	134, 278
AsiGI	ACCGGT	1 cut(s)	57
AspLEI	GCGC	2 cut(s)	502, 504
AspS9I	GGNCC	3 cut(s)	72, 121, 177
AsuHPI	GGTGA	3 cut(s)	124, 157, 475
AvaII	GGWCC	1 cut(s)	177
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	436
BccI	CCATC	2 cut(s)	83, 109
BcoDI	GTCTC	2 cut(s)	263, 455
BfaI	CTAG	2 cut(s)	273, 302
Bme18I	GGWCC	1 cut(s)	177
BmgT120I	GGNCC	3 cut(s)	72, 121, 177
BmiI	GGNNCC	1 cut(s)	178
BpuEI	CTTGAG	2 cut(s)	287, 420
BsaI	GGTCTC	1 cut(s)	455
BsaWI	WCCGGW	3 cut(s)	57, 82, 126
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 174, 403
Bse118I	RCCGGY	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	343
BseAI	TCCGGA	1 cut(s)	126
BseGI	GGATG	2 cut(s)	75, 463
BseLI	CCNNNNNNNGG	3 cut(s)	64, 174, 403
BseMII	CTCAG	2 cut(s)	138, 210
BseNI	ACTGG	1 cut(s)	343
BsePI	GCGCGC	1 cut(s)	500
BseRI	GAGGAG	1 cut(s)	335
BseYI	CCCAGC	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	502
BshFI	GGCC	3 cut(s)	74, 122, 203
BshTI	ACCGGT	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	436
BsiSI	CCGG	3 cut(s)	58, 83, 127
BslI	CCNNNNNNNGG	3 cut(s)	64, 174, 403
BsmAI	GTCTC	2 cut(s)	263, 455
BsnI	GGCC	3 cut(s)	74, 122, 203
Bso31I	GGTCTC	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	159, 436
Bsp13I	TCCGGA	1 cut(s)	126
Bsp1407I	TGTACA	1 cut(s)	508
Bsp143I	GATC	4 cut(s)	43, 259, 316, 490
BspACI	CCGC	2 cut(s)	65, 173
BspANI	GGCC	3 cut(s)	74, 122, 203
BspCNI	CTCAG	2 cut(s)	139, 209
BspEI	TCCGGA	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	178
BspTNI	GGTCTC	1 cut(s)	455
BsrFI	RCCGGY	1 cut(s)	57
BsrGI	TGTACA	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	343
BssAI	RCCGGY	1 cut(s)	57
BssHII	GCGCGC	1 cut(s)	500
BssMI	GATC	4 cut(s)	43, 259, 316, 490
Bst4CI	ACNGT	3 cut(s)	112, 169, 508
Bst6I	CTCTTC	2 cut(s)	191, 414
BstAUI	TGTACA	1 cut(s)	508
BstC8I	GCNNGC	1 cut(s)	502
BstDEI	CTNAG	2 cut(s)	147, 196
BstF5I	GGATG	2 cut(s)	75, 463
BstFNI	CGCG	1 cut(s)	502
BstHHI	GCGC	2 cut(s)	502, 504
BstKTI	GATC	4 cut(s)	46, 262, 319, 493
BstMAI	GTCTC	2 cut(s)	263, 455
BstMBI	GATC	4 cut(s)	43, 259, 316, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 501
BstNSI	RCATGY	1 cut(s)	228
BstUI	CGCG	1 cut(s)	502
BsuRI	GGCC	3 cut(s)	74, 122, 203
BtsCI	GGATG	2 cut(s)	75, 463
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	24, 504
Cac8I	GCNNGC	1 cut(s)	502
CfoI	GCGC	2 cut(s)	502, 504
Cfr10I	RCCGGY	1 cut(s)	57
Cfr13I	GGNCC	3 cut(s)	72, 121, 177
Csp6I	GTAC	1 cut(s)	509
CspAI	ACCGGT	1 cut(s)	57
CviAII	CATG	1 cut(s)	225
CviJI	RGCY	6 cut(s)	74, 122, 157, 203, 409, 474
CviKI_1	RGCY	6 cut(s)	74, 122, 157, 203, 409, 474
CviQI	GTAC	1 cut(s)	509
DdeI	CTNAG	2 cut(s)	147, 196
DpnI	GATC	4 cut(s)	45, 261, 318, 492
DpnII	GATC	4 cut(s)	43, 259, 316, 490
Eam1104I	CTCTTC	2 cut(s)	191, 414
EarI	CTCTTC	2 cut(s)	191, 414
Eco24I	GRGCYC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	1 cut(s)	228
FaiI	YATR	7 cut(s)	70, 226, 246, 359, 380, 402, 488
FatI	CATG	1 cut(s)	224
FauI	CCCGC	1 cut(s)	166
FokI	GGATG	2 cut(s)	62, 470
FriOI	GRGCYC	1 cut(s)	159
FspBI	CTAG	2 cut(s)	273, 302
GlaI	GCGC	2 cut(s)	501, 503
GsaI	CCCAGC	1 cut(s)	354
HaeIII	GGCC	3 cut(s)	74, 122, 203
HapII	CCGG	3 cut(s)	58, 83, 127
HhaI	GCGC	2 cut(s)	502, 504
Hin1II	CATG	1 cut(s)	228
Hin6I	GCGC	2 cut(s)	500, 502
HinP1I	GCGC	2 cut(s)	500, 502
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HinfI	GANTC	2 cut(s)	342, 391
HpaI	GTTAAC	1 cut(s)	327
HpaII	CCGG	3 cut(s)	58, 83, 127
HphI	GGTGA	3 cut(s)	124, 157, 475
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	6 cut(s)	16, 48, 148, 199, 312, 390
Hpy188III	TCNNGA	3 cut(s)	127, 455, 519
Hpy8I	GTNNAC	1 cut(s)	327
HpyCH4III	ACNGT	3 cut(s)	112, 169, 508
HpyCH4V	TGCA	3 cut(s)	55, 224, 366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 501
HpyF3I	CTNAG	2 cut(s)	147, 196
Hsp92II	CATG	1 cut(s)	228
HspAI	GCGC	2 cut(s)	500, 502
Kpn2I	TCCGGA	1 cut(s)	126
KspAI	GTTAAC	1 cut(s)	327
Kzo9I	GATC	4 cut(s)	43, 259, 316, 490
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	9 cut(s)	46, 71, 96, 140, 317, 324, 336, 440, 484
MaeI	CTAG	2 cut(s)	273, 302
MaeIII	GTNAC	1 cut(s)	516
MalI	GATC	4 cut(s)	45, 261, 318, 492
MboI	GATC	4 cut(s)	43, 259, 316, 490
MboII	GAAGA	3 cut(s)	178, 431, 436
MhlI	GDGCHC	2 cut(s)	159, 436
MluCI	AATT	3 cut(s)	134, 278, 478
MlyI	GAGTC	1 cut(s)	336
MnlI	CCTC	6 cut(s)	112, 134, 142, 193, 356, 485
MroI	TCCGGA	1 cut(s)	126
MseI	TTAA	2 cut(s)	105, 326
MspI	CCGG	3 cut(s)	58, 83, 127
MvnI	CGCG	1 cut(s)	502
MwoI	GCNNNNNNNGC	2 cut(s)	71, 501
NdeII	GATC	4 cut(s)	43, 259, 316, 490
NlaIII	CATG	1 cut(s)	228
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	516
NspI	RCATGY	1 cut(s)	228
PauI	GCGCGC	1 cut(s)	500
PfeI	GAWTC	1 cut(s)	391
PinAI	ACCGGT	1 cut(s)	57
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
PspFI	CCCAGC	1 cut(s)	350
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	3 cut(s)	72, 121, 177
PteI	GCGCGC	1 cut(s)	500
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
SaqAI	TTAA	2 cut(s)	105, 326
Sau3AI	GATC	4 cut(s)	43, 259, 316, 490
Sau96I	GGNCC	3 cut(s)	72, 121, 177
SchI	GAGTC	1 cut(s)	336
SduI	GDGCHC	2 cut(s)	159, 436
SetI	ASST	2 cut(s)	153, 411
SgrAI	CRCCGGYG	1 cut(s)	57
SinI	GGWCC	1 cut(s)	177
SmlI	CTYRAG	2 cut(s)	266, 435
SmoI	CTYRAG	2 cut(s)	266, 435
Sse9I	AATT	3 cut(s)	134, 278, 478
SsiI	CCGC	2 cut(s)	65, 173
SspMI	CTAG	2 cut(s)	273, 302
TaaI	ACNGT	3 cut(s)	112, 169, 508
TaqI	TCGA	2 cut(s)	153, 258
TasI	AATT	3 cut(s)	134, 278, 478
TatI	WGTACW	1 cut(s)	508
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	2 cut(s)	105, 326
Tru9I	TTAA	2 cut(s)	105, 326
TscAI	CASTG	2 cut(s)	31, 511
TseFI	GTSAC	1 cut(s)	516
Tsp45I	GTSAC	1 cut(s)	516
TspDTI	ATGAA	2 cut(s)	205, 432
TspRI	CASTG	2 cut(s)	31, 511
VpaK11BI	GGWCC	1 cut(s)	177
XapI	RAATTY	2 cut(s)	134, 278
XceI	RCATGY	1 cut(s)	228
XspI	CTAG	2 cut(s)	273, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.