Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005138

Physical Location & Seq

Genomic Coordinates Reverse (-)

4482452 .. 4486528

Gene Structure 4077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07471.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCTAGGGCTCCAAGCAAGCACGGCCGCGACCAAGCTCTGGACTGGGAGCTTTCGCTCAAGGACAAGGACAAGAAAATGAGGCCACAACAACCCAACAAGGAAGCTCCGAAATCAAGAGATTTTGGAACTAGTTCCTACTCGACAAATTATGAACCAATGAATACAGTATCAAGTAGTTTCACTTCTGAAGATGGTCTTCCAGATGCTGCTTCGGAAAAGGACTTGGGTAATGAGTATTTTAAGCAGAAGAAGTTTAAGGAAGCTATTGACTGCTATTCAAGAAGCATTGCCTTAACTCCAACAGCGGTAGCTTTTGCAAATAGGGCAATGTCATATATCAAAATCAAAAGATTCCAGGAAGCTGAGAATGACTGTACAGAGGCCTTGAATTTGGATGATCGCTATATAAAAGCATACTCACGACGTGCAACAGCTAGAAAAGAACTAGGAAAACTTAAAGAATCTATTGAGGATGCAGAGTTTGCTCTGAGGTTGGAGCCACACAACCAAGAAATCAAGAAACAGTATGCTGAGGCCAAATCTTTGTATGAGAAAGGAATTCTTCAGAAGGTATCTGGAGCGATAAAAATCTCTGAACAAGACAAGCAGAAAGTGGAGAAGTCGGGTACCACAGTGAATGGACACAGCATCCAGCCTGTCTCTAGTACTACTCAAAGGACAGAAACGACTGCAGTTGGAGATCACACTAAGAAAATTAACACAAATGGGAAGCAAGCGTCAAAGTTATCAGTACAAGAACTTGCTTCTCGAGCTGCTTCACGAGCCAAGGCTCTAGCTGCAGAAAACATCACACCACCAAGTTCAGCTTATCAATTTGAGGCTTCTTGGAGAGGACTCTCTGGAGATCGTGCTCTTCAGGCTAAATTGTTGAAGGCTATATCTCCCAGTGCACTGCCGCAGATATTCAAAAATGCTTTGACTGTTCACATACTAGTTGATATTCTCAAGTGTGTGACAACCTTTTTTATTGACGAAATGGATTTGGCCGTCAGTGTTTTGGAGAACTTAACTAAGGTTCCTAGATTTGACACACTCATCATGTTTCTATCATCCAACGACAAGGCTGATCTTGCTAAGATATGGGATGAAGTGTTTTACAATGAAGCAACCCCCATTGAGTTTGCTGAAAAGCTTGATAACCTGCGTGCAAAGTACTGCCTCAAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0097255

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP3_C TPR_1 TPR_8

Protein Analysis

398

Amino Acids

44.49

Weight (kDa)

9.01

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	37 - 113	2.8e-08	Serine/threonine-protein kinase BSK1-like, TPR repeats
TPR_1	PF00515	48 - 75	2.3e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56440 AT1G56440
fragaria_vesca	FvH4_6g07471 FvH4_6g07471 FvH4_6g07471 FvH4_6g07471 FvH4_6g07471 FvH4_6g07471
malus_domestica	MD12G1205500.v1.1
prunus_persica	Prupe.3G076000_v2.0.a1 Prupe.3G076000_v2.0.a1 Prupe.3G076000_v2.0.a1 Prupe.3G076000_v2.0.a1
pyrus_communis	pycom12g19340
rosa_chinensis	RchiOBHm_Chr3g0457141 RchiOBHm_Chr3g0457161 RchiOBHm_Chr3g0457171
rosa_laevigata	RLG00000025245
rosa_roxburghii	Rroxscaffold_6G00422140 Rroxscaffold_6G00422150
rosa_rugosa	Rorug03G0019200 Rorug03G0019200 Rorug03G0019200
rosa_samantha	Rh3AG079000 Rh3BG080700 Rh3CG080800 Rh3DG082600 Rh3DG082700
rosa_wichuraiana	Rw3G006780 Rw3G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1173
Acc65I	GGTACC	1 cut(s)	629
AccB1I	GGYRCC	1 cut(s)	629
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccII	CGCG	1 cut(s)	30
AciI	CCGC	3 cut(s)	28, 308, 920
AcoI	YGGCCR	2 cut(s)	25, 1008
AcsI	RAATTY	2 cut(s)	391, 561
AcuI	CTGAAG	3 cut(s)	210, 551, 863
AdeI	CACNNNGTG	1 cut(s)	428
AfaI	GTAC	5 cut(s)	379, 631, 670, 756, 1178
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	4 cut(s)	282, 391, 895, 931
AhlI	ACTAGT	2 cut(s)	131, 955
AjiI	CACGTC	1 cut(s)	428
AjnI	CCWGG	1 cut(s)	357
Alw21I	GWGCWC	2 cut(s)	877, 916
Alw26I	GTCTC	1 cut(s)	667
Alw44I	GTGCAC	1 cut(s)	912
AlwNI	CAGNNNCTG	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	771
AoxI	GGCC	5 cut(s)	25, 83, 384, 537, 1008
ApaLI	GTGCAC	1 cut(s)	912
ApeKI	GCWGC	3 cut(s)	209, 776, 800
ApoI	RAATTY	2 cut(s)	391, 561
Asp700I	GAANNNNTTC	1 cut(s)	133
Asp718I	GGTACC	1 cut(s)	629
AvaI	CYCGRG	1 cut(s)	771
BaeGI	GKGCMC	1 cut(s)	916
BaeI	ACNNNNGTAYC	2 cut(s)	621, 654
BanI	GGYRCC	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	13
BarI	GAAGNNNNNNTAC	2 cut(s)	169, 201
BauI	CACGAG	1 cut(s)	783
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	2 cut(s)	877, 916
BbvCI	CCTCAGC	1 cut(s)	534
BbvI	GCAGC	3 cut(s)	196, 763, 787
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	2 cut(s)	40, 995
BciT130I	CCWGG	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	667
BcuI	ACTAGT	2 cut(s)	131, 955
BfaI	CTAG	8 cut(s)	6, 132, 438, 449, 666, 797, 956, 1044
BfmI	CTRYAG	2 cut(s)	693, 801
BfuAI	ACCTGC	1 cut(s)	1173
BisI	GCNGC	5 cut(s)	28, 210, 777, 801, 920
BlsI	GCNGC	5 cut(s)	29, 211, 778, 802, 921
BmcAI	AGTACT	2 cut(s)	670, 1178
Bme1390I	CCNGG	1 cut(s)	359
BmeT110I	CYCGRG	1 cut(s)	771
BmgBI	CACGTC	1 cut(s)	428
BmiI	GGNNCC	4 cut(s)	12, 501, 631, 1041
BmrFI	CCNGG	1 cut(s)	359
BmrI	ACTGGG	2 cut(s)	55, 903
BmsI	GCATC	3 cut(s)	196, 466, 660
BmuI	ACTGGG	2 cut(s)	55, 903
BpiI	GAAGAC	1 cut(s)	191
BpmI	CTGGAG	2 cut(s)	600, 885
Bpu10I	CCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	3 cut(s)	44, 953, 1169
BsaBI	GATNNNNATC	1 cut(s)	590
BsaJI	CCNNGG	1 cut(s)	789
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	50, 909
Bse3DI	GCAATG	2 cut(s)	288, 336
Bse8I	GATNNNNATC	1 cut(s)	590
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	789
BseGI	GGATG	5 cut(s)	403, 481, 651, 1073, 1114
BseJI	GATNNNNATC	1 cut(s)	590
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	2 cut(s)	288, 336
BseMII	CTCAG	3 cut(s)	357, 482, 525
BseNI	ACTGG	2 cut(s)	50, 909
BseSI	GKGCMC	1 cut(s)	916
BseX3I	CGGCCG	1 cut(s)	25
BseXI	GCAGC	3 cut(s)	196, 763, 787
Bsh1236I	CGCG	1 cut(s)	30
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	5 cut(s)	27, 85, 386, 539, 1010
BshNI	GGYRCC	1 cut(s)	629
BsiEI	CGRYCG	1 cut(s)	28
BsiHKAI	GWGCWC	2 cut(s)	877, 916
BsiHKCI	CYCGRG	1 cut(s)	771
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	667
BsnI	GGCC	5 cut(s)	27, 85, 386, 539, 1010
BsoBI	CYCGRG	1 cut(s)	771
Bsp1286I	GDGCHC	3 cut(s)	13, 877, 916
Bsp1407I	TGTACA	1 cut(s)	377
Bsp143I	GATC	4 cut(s)	400, 703, 868, 1090
BspACI	CCGC	3 cut(s)	28, 308, 920
BspANI	GGCC	5 cut(s)	27, 85, 386, 539, 1010
BspCNI	CTCAG	3 cut(s)	358, 483, 526
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	4 cut(s)	12, 501, 631, 1041
BspMAI	CTGCAG	2 cut(s)	697, 805
BspMI	ACCTGC	1 cut(s)	1173
BspQI	GCTCTTC	1 cut(s)	882
BspT107I	GGYRCC	1 cut(s)	629
BsrDI	GCAATG	2 cut(s)	288, 336
BsrGI	TGTACA	1 cut(s)	377
BsrI	ACTGG	2 cut(s)	50, 909
BssECI	CCNNGG	1 cut(s)	789
BssMI	GATC	4 cut(s)	400, 703, 868, 1090
BssSI	CACGAG	1 cut(s)	783
BssT1I	CCWWGG	1 cut(s)	789
Bst2BI	CACGAG	1 cut(s)	783
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	5 cut(s)	169, 377, 528, 637, 946
Bst6I	CTCTTC	1 cut(s)	882
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstAUI	TGTACA	1 cut(s)	377
BstC8I	GCNNGC	3 cut(s)	20, 738, 1170
BstDEI	CTNAG	6 cut(s)	366, 491, 534, 711, 1035, 1098
BstF5I	GGATG	5 cut(s)	403, 481, 651, 1073, 1114
BstFNI	CGCG	1 cut(s)	30
BstKTI	GATC	4 cut(s)	403, 706, 871, 1093
BstMAI	GTCTC	1 cut(s)	667
BstMBI	GATC	4 cut(s)	400, 703, 868, 1090
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	8 cut(s)	24, 326, 485, 773, 785, 800, 881, 1094
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	2 cut(s)	693, 801
BstSLI	GKGCMC	1 cut(s)	916
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	3 cut(s)	196, 763, 787
BstV2I	GAAGAC	1 cut(s)	191
BstZI	CGGCCG	1 cut(s)	25
BsuRI	GGCC	5 cut(s)	27, 85, 386, 539, 1010
BtrI	CACGTC	1 cut(s)	428
BtsCI	GGATG	5 cut(s)	403, 481, 651, 1073, 1114
BtsI	GCAGTG	1 cut(s)	914
BtsIMutI	CAGTG	4 cut(s)	642, 914, 916, 1021
BveI	ACCTGC	1 cut(s)	1173
Cac8I	GCNNGC	3 cut(s)	20, 738, 1170
CaiI	CAGNNNCTG	1 cut(s)	209
CseI	GACGC	1 cut(s)	729
Csp6I	GTAC	5 cut(s)	378, 630, 669, 755, 1177
CviAII	CATG	1 cut(s)	1063
CviQI	GTAC	5 cut(s)	378, 630, 669, 755, 1177
DdeI	CTNAG	6 cut(s)	366, 491, 534, 711, 1035, 1098
DpnI	GATC	4 cut(s)	402, 705, 870, 1092
DpnII	GATC	4 cut(s)	400, 703, 868, 1090
DraIII	CACNNNGTG	1 cut(s)	428
EaeI	YGGCCR	2 cut(s)	25, 1008
EagI	CGGCCG	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	882
EarI	CTCTTC	1 cut(s)	882
EclXI	CGGCCG	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	789
Eco147I	AGGCCT	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	13
Eco52I	CGGCCG	1 cut(s)	25
Eco57I	CTGAAG	3 cut(s)	210, 551, 863
Eco88I	CYCGRG	1 cut(s)	771
EcoRI	GAATTC	1 cut(s)	561
EcoRII	CCWGG	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	789
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	789
FaeI	CATG	1 cut(s)	1066
FalI	AAGNNNNNCTT	6 cut(s)	183, 215, 549, 581, 814, 846
FatI	CATG	1 cut(s)	1062
Fnu4HI	GCNGC	5 cut(s)	28, 210, 777, 801, 920
FokI	GGATG	5 cut(s)	410, 488, 638, 1060, 1121
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	5 cut(s)	28, 210, 777, 801, 920
FspBI	CTAG	8 cut(s)	6, 132, 438, 449, 666, 797, 956, 1044
GluI	GCNGC	5 cut(s)	28, 210, 777, 801, 920
GsuI	CTGGAG	2 cut(s)	600, 885
HaeIII	GGCC	5 cut(s)	27, 85, 386, 539, 1010
HgaI	GACGC	1 cut(s)	729
Hin1II	CATG	1 cut(s)	1066
HindIII	AAGCTT	1 cut(s)	1154
HinfI	GANTC	3 cut(s)	354, 464, 858
Hpy166II	GTNNAC	2 cut(s)	914, 949
Hpy188I	TCNGA	6 cut(s)	111, 190, 217, 492, 570, 598
Hpy8I	GTNNAC	2 cut(s)	914, 949
Hpy99I	CGWCG	1 cut(s)	429
HpyAV	CCTTC	2 cut(s)	565, 889
HpyCH4III	ACNGT	5 cut(s)	169, 377, 528, 637, 946
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	7 cut(s)	320, 431, 479, 695, 803, 914, 1172
HpyF10VI	GCNNNNNNNGC	8 cut(s)	24, 326, 485, 773, 785, 800, 881, 1094
HpyF3I	CTNAG	6 cut(s)	366, 491, 534, 711, 1035, 1098
HpySE526I	ACGT	1 cut(s)	427
Hsp92II	CATG	1 cut(s)	1066
KpnI	GGTACC	1 cut(s)	633
Kzo9I	GATC	4 cut(s)	400, 703, 868, 1090
LguI	GCTCTTC	1 cut(s)	882
LmnI	GCTCC	5 cut(s)	16, 49, 112, 499, 581
Lsp1109I	GCAGC	3 cut(s)	196, 763, 787
LweI	GCATC	3 cut(s)	196, 466, 660
MaeI	CTAG	8 cut(s)	6, 132, 438, 449, 666, 797, 956, 1044
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	1 cut(s)	976
MalI	GATC	4 cut(s)	402, 705, 870, 1092
MboI	GATC	4 cut(s)	400, 703, 868, 1090
MboII	GAAGA	5 cut(s)	191, 203, 262, 557, 869
MhlI	GDGCHC	3 cut(s)	13, 877, 916
MluCI	AATT	6 cut(s)	148, 391, 561, 717, 836, 887
MlyI	GAGTC	1 cut(s)	852
MmeI	TCCRAC	4 cut(s)	326, 477, 679, 1101
MnlI	CCTC	8 cut(s)	75, 376, 466, 486, 529, 835, 848, 1193
MroXI	GAANNNNTTC	1 cut(s)	133
MseI	TTAA	6 cut(s)	243, 258, 296, 459, 720, 1031
MspA1I	CMGCKG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	8 cut(s)	24, 326, 485, 773, 785, 800, 881, 1094
NdeII	GATC	4 cut(s)	400, 703, 868, 1090
NlaIII	CATG	1 cut(s)	1066
NlaIV	GGNNCC	4 cut(s)	12, 501, 631, 1041
NmuCI	GTSAC	1 cut(s)	976
PaeR7I	CTCGAG	1 cut(s)	771
PceI	AGGCCT	1 cut(s)	386
PciSI	GCTCTTC	1 cut(s)	882
PdmI	GAANNNNTTC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	354, 464
PflMI	CCANNNNNTGG	1 cut(s)	40
PfoI	TCCNGGA	1 cut(s)	357
PkrI	GCNGC	5 cut(s)	29, 211, 778, 802, 921
PleI	GAGTC	1 cut(s)	852
PpsI	GAGTC	1 cut(s)	852
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	4 cut(s)	12, 501, 631, 1041
PstI	CTGCAG	2 cut(s)	697, 805
PstNI	CAGNNNCTG	1 cut(s)	209
RsaI	GTAC	5 cut(s)	379, 631, 670, 756, 1178
RsaNI	GTAC	5 cut(s)	378, 630, 669, 755, 1177
SapI	GCTCTTC	1 cut(s)	882
SaqAI	TTAA	6 cut(s)	243, 258, 296, 459, 720, 1031
SatI	GCNGC	5 cut(s)	28, 210, 777, 801, 920
Sau3AI	GATC	4 cut(s)	400, 703, 868, 1090
ScaI	AGTACT	2 cut(s)	670, 1178
SchI	GAGTC	1 cut(s)	852
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	3 cut(s)	13, 877, 916
SfaNI	GCATC	3 cut(s)	196, 466, 660
SfcI	CTRYAG	2 cut(s)	693, 801
Sfr274I	CTCGAG	1 cut(s)	771
SlaI	CTCGAG	1 cut(s)	771
SmlI	CTYRAG	4 cut(s)	59, 771, 968, 1184
SmoI	CTYRAG	4 cut(s)	59, 771, 968, 1184
SpeI	ACTAGT	2 cut(s)	131, 955
Sse9I	AATT	6 cut(s)	148, 391, 561, 717, 836, 887
SseBI	AGGCCT	1 cut(s)	386
SsiI	CCGC	3 cut(s)	28, 308, 920
SspMI	CTAG	8 cut(s)	6, 132, 438, 449, 666, 797, 956, 1044
StuI	AGGCCT	1 cut(s)	386
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	789
TaaI	ACNGT	5 cut(s)	169, 377, 528, 637, 946
TaiI	ACGT	1 cut(s)	430
TaqI	TCGA	2 cut(s)	143, 772
TasI	AATT	6 cut(s)	148, 391, 561, 717, 836, 887
TatI	WGTACW	4 cut(s)	377, 668, 754, 1176
TauI	GCSGC	2 cut(s)	30, 922
TfiI	GAWTC	2 cut(s)	354, 464
Tru1I	TTAA	6 cut(s)	243, 258, 296, 459, 720, 1031
Tru9I	TTAA	6 cut(s)	243, 258, 296, 459, 720, 1031
TscAI	CASTG	4 cut(s)	642, 916, 921, 1021
TseFI	GTSAC	1 cut(s)	976
TseI	GCWGC	3 cut(s)	209, 776, 800
Tsp45I	GTSAC	1 cut(s)	976
TspDTI	ATGAA	4 cut(s)	168, 176, 1125, 1140
TspRI	CASTG	4 cut(s)	642, 916, 921, 1021
Van91I	CCANNNNNTGG	1 cut(s)	40
VneI	GTGCAC	1 cut(s)	912
XapI	RAATTY	2 cut(s)	391, 561
XhoI	CTCGAG	1 cut(s)	771
XmnI	GAANNNNTTC	1 cut(s)	133
XspI	CTAG	8 cut(s)	6, 132, 438, 449, 666, 797, 956, 1044
ZrmI	AGTACT	2 cut(s)	670, 1178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.