Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005138

Physical Location & Seq

Genomic Coordinates Reverse (-)

5589477 .. 5592161

Gene Structure 2685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G076000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCAGAAAGTGGGAAAGTTGGATACCAAATTGAACGGACAAAGCGTCCAGCCTGTCTCCAGCAGTGCTCAAATAACAGAAATGACTGCAGTTCAAGATCACACTAAGAGAAATAACACAACTAGGAAGCAAGAGGTGGAGGCATCGGTACAAGAGCTTGCTTCTCGAGCTGCTTCCCGAGTCAAGGCTGTAGCTGCGGAAAAGATCACACCACCAAATTCGGCATATCAATTTGAGGCTATATCTCCAAGTGCATTGCCGCAGATATTCAAAAATGCTTTGACTGTTCCCATACTTCTTGACATTATCAAGTGTGCGGCAACCTTTGTCGTTGAAGAAATGGATTTGGCCGTCAATTATTTGGAGAACTTAACCGGGGTTCCAAGATTTGACACACTCATCATGTTTCTTTCGTCCTCAGACAACGCTGATCTTGTTAAGATATGGGATGAAGTGTTTGACAATGAGGCAACTCCGGTTGAGTATGCCGAGAAGCTTGATAACCTGCATACAAAGTACTGCCCAAGCGATGACAAAGCTCAACAAGTTTCTACTTTACCCTCCTCCACCTCTTGTACTGTAAATTCAAGTTGTAAAAATTTGAAATGCTCCAACGACCCCTTTGAATCTCAAATTGTATCGTGGACAACTTTTCTATCCATTTATCGAGATGTTAAAAGTACATTGCAACTTTTACTTCACTCCTGTTGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0097255

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP3_C TPR_1 TPR_8

Protein Analysis

239

Amino Acids

26.34

Weight (kDa)

5.15

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56440 AT1G56440
fragaria_vesca	FvH4_6g07471 FvH4_6g07471 FvH4_6g07471 FvH4_6g07471 FvH4_6g07471 FvH4_6g07471
malus_domestica	MD12G1205500.v1.1
prunus_persica	Prupe.3G076000_v2.0.a1 Prupe.3G076000_v2.0.a1 Prupe.3G076000_v2.0.a1 Prupe.3G076000_v2.0.a1
pyrus_communis	pycom12g19340
rosa_chinensis	RchiOBHm_Chr3g0457141 RchiOBHm_Chr3g0457161 RchiOBHm_Chr3g0457171
rosa_laevigata	RLG00000025245
rosa_roxburghii	Rroxscaffold_6G00422140 Rroxscaffold_6G00422150
rosa_rugosa	Rorug03G0019200 Rorug03G0019200 Rorug03G0019200
rosa_samantha	Rh3AG079000 Rh3BG080700 Rh3CG080800 Rh3DG082600 Rh3DG082700
rosa_wichuraiana	Rw3G006780 Rw3G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	513
AciI	CCGC	3 cut(s)	197, 260, 317
AcoI	YGGCCR	1 cut(s)	348
AcsI	RAATTY	3 cut(s)	217, 583, 598
AfaI	GTAC	4 cut(s)	150, 518, 577, 682
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	7 cut(s)	34, 95, 271, 335, 588, 604, 626
AhdI	GACNNNNNGTC	1 cut(s)	44
AluBI	AGCT	5 cut(s)	157, 170, 194, 496, 539
AluI	AGCT	5 cut(s)	157, 170, 194, 496, 539
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	61
Ama87I	CYCGRG	2 cut(s)	165, 177
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	2 cut(s)	170, 194
ApoI	RAATTY	3 cut(s)	217, 583, 598
AsuC2I	CCSGG	1 cut(s)	376
AvaI	CYCGRG	2 cut(s)	165, 177
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	157, 181
BceAI	ACGGC	1 cut(s)	335
BciVI	GTATCC	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	2 cut(s)	87, 189
BfuAI	ACCTGC	1 cut(s)	513
BfuI	GTATCC	1 cut(s)	16
BisI	GCNGC	4 cut(s)	171, 195, 260, 318
BlsI	GCNGC	4 cut(s)	172, 196, 261, 319
BmcAI	AGTACT	1 cut(s)	518
Bme1390I	CCNGG	1 cut(s)	376
BmeRI	GACNNNNNGTC	1 cut(s)	44
BmeT110I	CYCGRG	2 cut(s)	165, 177
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	376
BmsI	GCATC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	475
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse3DI	GCAATG	2 cut(s)	254, 683
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMI	GCAATG	2 cut(s)	254, 683
BseMII	CTCAG	1 cut(s)	432
BseRI	GAGGAG	1 cut(s)	553
BseXI	GCAGC	2 cut(s)	157, 181
BshFI	GGCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	70
BsiHKCI	CYCGRG	2 cut(s)	165, 177
BsiSI	CCGG	2 cut(s)	375, 476
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	350
BsoBI	CYCGRG	2 cut(s)	165, 177
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	97, 204, 430
BspACI	CCGC	3 cut(s)	197, 260, 317
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	1 cut(s)	431
BspLI	GGNNCC	1 cut(s)	381
BspMAI	CTGCAG	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	513
BsrDI	GCAATG	2 cut(s)	254, 683
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	3 cut(s)	97, 204, 430
Bst4CI	ACNGT	2 cut(s)	286, 580
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	2 cut(s)	105, 418
BstF5I	GGATG	1 cut(s)	454
BstKTI	GATC	3 cut(s)	100, 207, 433
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	3 cut(s)	97, 204, 430
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 194
BstSCI	CCNGG	1 cut(s)	374
BstSFI	CTRYAG	2 cut(s)	87, 189
BstV1I	GCAGC	2 cut(s)	157, 181
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	350
BtgZI	GCGATG	1 cut(s)	543
BtsCI	GGATG	1 cut(s)	454
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	70
BveI	ACCTGC	1 cut(s)	513
Cac8I	GCNNGC	1 cut(s)	159
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	4 cut(s)	149, 517, 576, 681
CviAII	CATG	1 cut(s)	403
CviJI	RGCY	9 cut(s)	52, 157, 170, 188, 194, 239, 350, 496, 539
CviKI_1	RGCY	9 cut(s)	52, 157, 170, 188, 194, 239, 350, 496, 539
CviQI	GTAC	4 cut(s)	149, 517, 576, 681
DdeI	CTNAG	2 cut(s)	105, 418
DpnI	GATC	3 cut(s)	99, 206, 432
DpnII	GATC	3 cut(s)	97, 204, 430
DriI	GACNNNNNGTC	1 cut(s)	44
EaeI	YGGCCR	1 cut(s)	348
Eam1105I	GACNNNNNGTC	1 cut(s)	44
Eco88I	CYCGRG	2 cut(s)	165, 177
FaeI	CATG	1 cut(s)	406
FaiI	YATR	7 cut(s)	226, 242, 293, 404, 445, 486, 510
FatI	CATG	1 cut(s)	402
Fnu4HI	GCNGC	4 cut(s)	171, 195, 260, 318
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	4 cut(s)	171, 195, 260, 318
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	4 cut(s)	171, 195, 260, 318
GsuI	CTGGAG	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	2 cut(s)	375, 476
HgaI	GACGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	2 cut(s)	180, 626
HpaII	CCGG	2 cut(s)	375, 476
Hpy166II	GTNNAC	1 cut(s)	645
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	5 cut(s)	95, 165, 177, 299, 668
Hpy8I	GTNNAC	1 cut(s)	645
HpyCH4III	ACNGT	2 cut(s)	286, 580
HpyCH4V	TGCA	5 cut(s)	4, 89, 254, 508, 688
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 194
HpyF3I	CTNAG	2 cut(s)	105, 418
Hsp92II	CATG	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	97, 204, 430
LmnI	GCTCC	1 cut(s)	614
LpnPI	CCDG	6 cut(s)	62, 66, 73, 388, 489, 518
Lsp1109I	GCAGC	2 cut(s)	157, 181
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	123
MalI	GATC	3 cut(s)	99, 206, 432
MboI	GATC	3 cut(s)	97, 204, 430
MboII	GAAGA	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	7 cut(s)	29, 217, 230, 355, 583, 598, 633
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	2 cut(s)	636, 689
MnlI	CCTC	8 cut(s)	127, 133, 229, 427, 460, 571, 574, 580
MseI	TTAA	3 cut(s)	371, 438, 675
MspI	CCGG	2 cut(s)	375, 476
MspR9I	CCNGG	1 cut(s)	376
MwoI	GCNNNNNNNGC	2 cut(s)	167, 194
NciI	CCSGG	1 cut(s)	376
NdeII	GATC	3 cut(s)	97, 204, 430
NlaIII	CATG	1 cut(s)	406
NlaIV	GGNNCC	1 cut(s)	381
NmeAIII	GCCGAG	1 cut(s)	514
PaeR7I	CTCGAG	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	626
PkrI	GCNGC	4 cut(s)	172, 196, 261, 319
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	381
PstI	CTGCAG	1 cut(s)	91
RsaI	GTAC	4 cut(s)	150, 518, 577, 682
RsaNI	GTAC	4 cut(s)	149, 517, 576, 681
SaqAI	TTAA	3 cut(s)	371, 438, 675
SatI	GCNGC	4 cut(s)	171, 195, 260, 318
Sau3AI	GATC	3 cut(s)	97, 204, 430
ScaI	AGTACT	1 cut(s)	518
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	376
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	9 cut(s)	138, 159, 172, 196, 326, 498, 507, 541, 572
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	2 cut(s)	87, 189
Sfr274I	CTCGAG	1 cut(s)	165
SlaI	CTCGAG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	7 cut(s)	29, 217, 230, 355, 583, 598, 633
SsiI	CCGC	3 cut(s)	197, 260, 317
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	374
TaaI	ACNGT	2 cut(s)	286, 580
TaqI	TCGA	2 cut(s)	166, 667
TasI	AATT	7 cut(s)	29, 217, 230, 355, 583, 598, 633
TatI	WGTACW	3 cut(s)	516, 575, 680
TauI	GCSGC	2 cut(s)	262, 320
TfiI	GAWTC	1 cut(s)	626
Tru1I	TTAA	3 cut(s)	371, 438, 675
Tru9I	TTAA	3 cut(s)	371, 438, 675
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	2 cut(s)	170, 194
TspDTI	ATGAA	1 cut(s)	465
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	70
XapI	RAATTY	3 cut(s)	217, 583, 598
XhoI	CTCGAG	1 cut(s)	165
XspI	CTAG	1 cut(s)	123
ZrmI	AGTACT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.