Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005138

Physical Location & Seq

Genomic Coordinates Reverse (-)

6370864 .. 6371351

Gene Structure 488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42392

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGCTTATCTCCAATGAGTATATTTTCCTCAATGATTCAATGAAAGGCTTACCTGCACCTTTGGCTTATTTCTCTGGCAGTGATGAAATGGCTTTAACAGTCAGTTTTTTGGAGAACTTAACTAAAGTTCCTAGATTTGACACACTCATCATGTTTCTTTCTTCCAAGGACAAGGATGATCTTGCTAAGACATGGGATGAAGTGTTCTACTATGAGGTGATCCCCATTGAGTTTGCTGAAAAGCTTGATAACCTGCGTACAAAGTACTGCCTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0097255

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP3_C TPR_1 TPR_8

Protein Analysis

92

Amino Acids

10.7

Weight (kDa)

4.56

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPAP3_C	PF13877	24 - 58	2.5e-07	Potential Monad-binding region of RPAP3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56440 AT1G56440
fragaria_vesca	FvH4_6g07471 FvH4_6g07471 FvH4_6g07471 FvH4_6g07471 FvH4_6g07471 FvH4_6g07471
malus_domestica	MD12G1205500.v1.1
prunus_persica	Prupe.3G076000_v2.0.a1 Prupe.3G076000_v2.0.a1 Prupe.3G076000_v2.0.a1 Prupe.3G076000_v2.0.a1
pyrus_communis	pycom12g19340
rosa_chinensis	RchiOBHm_Chr3g0457141 RchiOBHm_Chr3g0457161 RchiOBHm_Chr3g0457171
rosa_laevigata	RLG00000025245
rosa_roxburghii	Rroxscaffold_6G00422140 Rroxscaffold_6G00422150
rosa_rugosa	Rorug03G0019200 Rorug03G0019200 Rorug03G0019200
rosa_samantha	Rh3AG079000 Rh3BG080700 Rh3CG080800 Rh3DG082600 Rh3DG082700
rosa_wichuraiana	Rw3G006780 Rw3G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	61, 261
AclWI	GGATC	1 cut(s)	214
AfaI	GTAC	2 cut(s)	259, 266
AflII	CTTAAG	1 cut(s)	272
AgsI	TTSAA	1 cut(s)	39
AloI	GAACNNNNNNTCC	2 cut(s)	188, 220
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
AlwI	GGATC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	229
BfaI	CTAG	1 cut(s)	132
BfrI	CTTAAG	1 cut(s)	272
BfuAI	ACCTGC	2 cut(s)	61, 261
BmcAI	AGTACT	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	2 cut(s)	181, 202
BsgI	GTGCAG	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	178, 219
BspMI	ACCTGC	2 cut(s)	61, 261
BspPI	GGATC	1 cut(s)	214
BspTI	CTTAAG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	2 cut(s)	178, 219
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	100
BstAFI	CTTAAG	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	2 cut(s)	181, 202
BstKTI	GATC	2 cut(s)	181, 222
BstMBI	GATC	2 cut(s)	178, 219
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	181, 202
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	85
BveI	ACCTGC	2 cut(s)	61, 261
Csp6I	GTAC	2 cut(s)	258, 265
CviAII	CATG	2 cut(s)	151, 192
CviJI	RGCY	4 cut(s)	48, 65, 92, 244
CviKI_1	RGCY	4 cut(s)	48, 65, 92, 244
CviQI	GTAC	2 cut(s)	258, 265
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	2 cut(s)	180, 221
DpnII	GATC	2 cut(s)	178, 219
Eco130I	CCWWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	154, 195
FaiI	YATR	4 cut(s)	21, 152, 193, 213
FatI	CATG	2 cut(s)	150, 191
FokI	GGATG	2 cut(s)	188, 209
FspBI	CTAG	1 cut(s)	132
Hin1II	CATG	2 cut(s)	154, 195
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	1 cut(s)	35
HphI	GGTGA	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	154, 195
Kzo9I	GATC	2 cut(s)	178, 219
LpnPI	CCDG	3 cut(s)	60, 66, 266
MaeI	CTAG	1 cut(s)	132
MalI	GATC	2 cut(s)	180, 221
MboI	GATC	2 cut(s)	178, 219
MboII	GAAGA	1 cut(s)	153
MnlI	CCTC	2 cut(s)	38, 208
MseI	TTAA	3 cut(s)	95, 119, 273
MspCI	CTTAAG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	2 cut(s)	178, 219
NlaIII	CATG	2 cut(s)	154, 195
PfeI	GAWTC	1 cut(s)	35
RsaI	GTAC	2 cut(s)	259, 266
RsaNI	GTAC	2 cut(s)	258, 265
SaqAI	TTAA	3 cut(s)	95, 119, 273
Sau3AI	GATC	2 cut(s)	178, 219
ScaI	AGTACT	1 cut(s)	266
SetI	ASST	5 cut(s)	55, 61, 219, 246, 255
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SspMI	CTAG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	100
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	3 cut(s)	95, 119, 273
Tru9I	TTAA	3 cut(s)	95, 119, 273
TscAI	CASTG	1 cut(s)	85
TspDTI	ATGAA	3 cut(s)	56, 99, 213
TspRI	CASTG	1 cut(s)	85
Vha464I	CTTAAG	1 cut(s)	272
XspI	CTAG	1 cut(s)	132
ZrmI	AGTACT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.