Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005138

Physical Location & Seq

Genomic Coordinates Forward (+)

43135023 .. 43139029

Gene Structure 4007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00422150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGACGAAATGGATTTGGCAGTCAACATTTTGGAGAACTTAACTAAGGTTCCTAGATTTGACACACTCGTCATGTTTCTTTCATCCAACGACAAGGCTGATCTTGCCAAGATATGGGATGAAGTGTTCTACAATGAAGCAACCCCCATTGAGTTTGCTGAAAAGCTTGATAACCTGCGTACAAAGTACTGCCTTAAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0097255

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP3_C TPR_1 TPR_8

Protein Analysis

67

Amino Acids

7.89

Weight (kDa)

4.62

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPAP3_C	PF13877	5 - 32	3.2e-07	Potential Monad-binding region of RPAP3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56440 AT1G56440
fragaria_vesca	FvH4_6g07471 FvH4_6g07471 FvH4_6g07471 FvH4_6g07471 FvH4_6g07471 FvH4_6g07471
malus_domestica	MD12G1205500.v1.1
prunus_persica	Prupe.3G076000_v2.0.a1 Prupe.3G076000_v2.0.a1 Prupe.3G076000_v2.0.a1 Prupe.3G076000_v2.0.a1
pyrus_communis	pycom12g19340
rosa_chinensis	RchiOBHm_Chr3g0457141 RchiOBHm_Chr3g0457161 RchiOBHm_Chr3g0457171
rosa_laevigata	RLG00000025245
rosa_roxburghii	Rroxscaffold_6G00422140 Rroxscaffold_6G00422150
rosa_rugosa	Rorug03G0019200 Rorug03G0019200 Rorug03G0019200
rosa_samantha	Rh3AG079000 Rh3BG080700 Rh3CG080800 Rh3DG082600 Rh3DG082700
rosa_wichuraiana	Rw3G006780 Rw3G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
Acc36I	ACCTGC	1 cut(s)	183
AccB7I	CCANNNNNTGG	1 cut(s)	114
AfaI	GTAC	2 cut(s)	181, 188
AfiI	CCNNNNNNNGG	1 cut(s)	114
AflII	CTTAAG	1 cut(s)	194
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
BfaI	CTAG	1 cut(s)	54
BfrI	CTTAAG	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	183
BmcAI	AGTACT	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
BseGI	GGATG	2 cut(s)	83, 124
BseLI	CCNNNNNNNGG	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	183
BspTI	CTTAAG	1 cut(s)	194
BssMI	GATC	1 cut(s)	100
BstAFI	CTTAAG	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	83, 124
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BtsCI	GGATG	2 cut(s)	83, 124
BveI	ACCTGC	1 cut(s)	183
Csp6I	GTAC	2 cut(s)	180, 187
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	2 cut(s)	98, 166
CviKI_1	RGCY	2 cut(s)	98, 166
CviQI	GTAC	2 cut(s)	180, 187
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
FaeI	CATG	1 cut(s)	76
FaiI	YATR	2 cut(s)	74, 115
FatI	CATG	1 cut(s)	72
FokI	GGATG	2 cut(s)	70, 131
FspBI	CTAG	1 cut(s)	54
Hin1II	CATG	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	1 cut(s)	188
MaeI	CTAG	1 cut(s)	54
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	111
MseI	TTAA	2 cut(s)	41, 195
MspCI	CTTAAG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	51
PflMI	CCANNNNNTGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	51
RsaI	GTAC	2 cut(s)	181, 188
RsaNI	GTAC	2 cut(s)	180, 187
SaqAI	TTAA	2 cut(s)	41, 195
Sau3AI	GATC	1 cut(s)	100
ScaI	AGTACT	1 cut(s)	188
SetI	ASST	3 cut(s)	51, 168, 177
SgeI	CNNG	8 cut(s)	66, 80, 85, 106, 116, 121, 179, 187
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SspMI	CTAG	1 cut(s)	54
TatI	WGTACW	1 cut(s)	186
Tru1I	TTAA	2 cut(s)	41, 195
Tru9I	TTAA	2 cut(s)	41, 195
TspDTI	ATGAA	3 cut(s)	72, 135, 150
Van91I	CCANNNNNTGG	1 cut(s)	114
Vha464I	CTTAAG	1 cut(s)	194
XspI	CTAG	1 cut(s)	54
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.