FvH4_6g10210

Non-specific serine threonine protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
6063530 .. 6067199
3670 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10210.t1

Sequence Viewer

Length: 1416 bp
ATGGAAAACAAAGGGAGTGTGCTGATGCAGCGATACGAACTGGGGAGGTTATTAGGCCAAGGAACCTTTGCCAAGGTCTACCATGCTAGGAACCTCAAAACCAACATGAGTGTGGCCATAAAGATAATTGACAAAGAGAGGATCTTGAAGGTCGGGATGATTGATCAGATCAAGCGTGAAATTTCTGTGATGCGGTTGATTAGACATCCAAATGTGGTGGAGCTTTATGAGGTGATGGCCAGCAAAACCAAGATTTACTTTGTCATGGAGTATGTCAAAGGTGGTGAGCTCTTCGACAAGGTCTCCAAAGGCAAGCTAAAGGAGGATGTTGCTAGGAAGTACTTTCAACAGCTCGTCAGTGCTGTTGACTACTGCCATAGTAGAGGTGTATACCATCGTGATCTGAAACCAGAAAACCTACTTTTGGATGAGAATGGAAATCTAAAGGTTTCAGATTTTGGACTGAGTGCCCTTGGTGAATCCAAGCGCCAAGATGGATTGCTTCATACAACCTGTGGGACTCCTGCATATGTTGCCCCAGAAGTAATAAACAGGAAAGGCTATGATGGTGCCAAAGCTGACATTTGGTCATGTGGGGTGGTATTGTTTGTTCTATTGGCTGGCTATCTTCCATTTCATGATGCAAATCTGATGGAGTTGTATAGGAAGATTGGTAAGGGGGAATTCAAATTCCCTAACTGGTTTACTCCTGAAGTACGCAGGTTGCTGTCAAAGATATTTGACCCAAATCCAAATACTCGGATATCTTTGTCTAAAGTAATGCAATCTTCTTGGTTCCGAAAGGGGCTGGTCCAGAAACCTGCAATTGTTGAATTACCAGTGAAAGAGCTTGCCCCTCTGGATGCTGATTCCATTTTTGGACCTGGTGAAGATAACAATTCTGTGACAGAGGCAAAGCAAGAATTAGTGCAGAAGCCGTCTAACTTGAACGCTTTCGATATCATCTCCTACTCCGCTGGCTTTGATTTGTCTGGACTGTTTGAAGAGGCTGAACAGAAAAAAGAAGTGCGGTTTACATCCAACAAAACTGCTTCAACCATCATCAGCAAGCTGGAAGACATAGCCAAGCGTCTGAAACTCAAAATCAAGAAGAAAGATGGAGGGTTGTTAAGAATGGAAGGGTCCACGGAAGGCAGGAAAGGGGTTTTGGGCATTGAAACTGAGATCTTCGAGATCACCCCGTCTTTTCACTTGGTGGAGGTGAAGAAGTCTAGTGGAGATACATTAGAGTATCAGAAGGTCATGAAAAAGGAGGTAAGACCAGGTCTCAAGGACATTATTTGGACTTGGCAAGGGGAGCAACAGCCGCAGCAACAAGAGCCACCACAACCAGAGCAGCAAGAGCAACAACCTTTGACGCTCCCAGTTCAAGTAGCCTCTCCCCAGGAGGCATAA

Protein Analysis

472

Amino Acids

53.28

Weight (kDa)

9.0

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 12 - 266 7.9e-78 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 13 - 262 1.7e-42 Protein tyrosine and serine/threonine kinase
ABC1 PF03109 83 - 167 5.6e-06 ABC1 atypical kinase-like domain
Kinase-like PF14531 100 - 250 3.2e-07 Kinase-like
NAF PF03822 313 - 371 1.1e-23 NAF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01810 AT5G01810 AT5G01810
fragaria_vesca FvH4_6g10210
malus_domestica MD04G1171600.v1.1 MD12G1185000.v1.1
prunus_persica Prupe.6G290400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0460951
rosa_laevigata RLG00000024964
rosa_multiflora Rmu_sc0021377.1_g000007
rosa_roxburghii Rroxscaffold_6G00419010
rosa_rugosa Rorug03G0047100
rosa_samantha Rh3AG104600 Rh3BG108300 Rh3DG110100
rosa_wichuraiana Rw3G008920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 711, 829
AccB1I GGYRCC 1 cut(s) 569
AccI GTMKAC 2 cut(s) 78, 390
AciI CCGC 4 cut(s) 193, 975, 1030, 1328
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 2 cut(s) 114, 237
AcsI RAATTY 3 cut(s) 180, 683, 689
AcuI CTGAAG 1 cut(s) 732
AdeI CACNNNGTG 1 cut(s) 1216
AfaI GTAC 2 cut(s) 341, 717
AfiI CCNNNNNNNGG 1 cut(s) 424
AgsI TTSAA 9 cut(s) 148, 347, 688, 833, 949, 1004, 1056, 1178, 1391
AhdI GACNNNNNGTC 1 cut(s) 586
AjnI CCWGG 3 cut(s) 883, 1282, 1404
AjuI GAANNNNNNNTTGG 2 cut(s) 1151, 1183
AluBI AGCT 7 cut(s) 223, 289, 316, 352, 578, 850, 1072
AluI AGCT 7 cut(s) 223, 289, 316, 352, 578, 850, 1072
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 2 cut(s) 307, 1292
AlwI GGATC 1 cut(s) 149
AoxI GGCC 3 cut(s) 55, 114, 237
ApeKI GCWGC 3 cut(s) 28, 1330, 1357
ApoI RAATTY 3 cut(s) 180, 683, 689
Asp700I GAANNNNTTC 1 cut(s) 953
AspLEI GCGC 1 cut(s) 489
AspS9I GGNCC 3 cut(s) 811, 881, 1143
AsuHPI GGTGA 6 cut(s) 244, 296, 488, 899, 1189, 1234
AvaII GGWCC 3 cut(s) 811, 881, 1143
BaeGI GKGCMC 1 cut(s) 472
BalI TGGCCA 2 cut(s) 116, 239
BanI GGYRCC 1 cut(s) 569
BanII GRGCYC 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 1083
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 3 cut(s) 40, 1342, 1369
BccI CCATC 7 cut(s) 229, 402, 488, 560, 646, 1067, 1112
BceAI ACGGC 1 cut(s) 922
BciT130I CCWGG 3 cut(s) 885, 1284, 1406
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 307, 1292
BfaI CTAG 3 cut(s) 87, 333, 1233
BfoI RGCGCY 1 cut(s) 490
BfuAI ACCTGC 2 cut(s) 711, 829
BglII AGATCT 1 cut(s) 1185
BisI GCNGC 4 cut(s) 29, 1328, 1331, 1358
BlsI GCNGC 4 cut(s) 30, 1329, 1332, 1359
BmcAI AGTACT 1 cut(s) 341
Bme1390I CCNGG 3 cut(s) 885, 1284, 1406
Bme18I GGWCC 3 cut(s) 811, 881, 1143
BmeRI GACNNNNNGTC 1 cut(s) 586
BmgT120I GGNCC 3 cut(s) 811, 881, 1143
BmiI GGNNCC 5 cut(s) 64, 92, 571, 797, 1144
BmrFI CCNGG 3 cut(s) 885, 1284, 1406
BmrI ACTGGG 2 cut(s) 50, 1379
BmsI GCATC 4 cut(s) 15, 180, 631, 853
BmuI ACTGGG 2 cut(s) 50, 1379
BpiI GAAGAC 1 cut(s) 1083
BpuEI CTTGAG 1 cut(s) 1274
BsaBI GATNNNNATC 1 cut(s) 645
BsaI GGTCTC 2 cut(s) 307, 1292
BsaJI CCNNGG 5 cut(s) 58, 72, 472, 1146, 1404
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 424
Bse1I ACTGG 4 cut(s) 45, 704, 839, 1385
Bse8I GATNNNNATC 1 cut(s) 645
BseBI CCWGG 3 cut(s) 885, 1284, 1406
BseDI CCNNGG 5 cut(s) 58, 72, 472, 1146, 1404
BseGI GGATG 6 cut(s) 162, 205, 331, 433, 868, 1037
BseJI GATNNNNATC 1 cut(s) 645
BseLI CCNNNNNNNGG 1 cut(s) 424
BseMII CTCAG 2 cut(s) 455, 1173
BseNI ACTGG 4 cut(s) 45, 704, 839, 1385
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 3 cut(s) 40, 1342, 1369
BsgI GTGCAG 1 cut(s) 950
BshFI GGCC 3 cut(s) 57, 116, 239
BshNI GGYRCC 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 291
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 1 cut(s) 424
BsmAI GTCTC 2 cut(s) 307, 1292
BsmFI GGGAC 1 cut(s) 532
BsnI GGCC 3 cut(s) 57, 116, 239
Bso31I GGTCTC 2 cut(s) 307, 1292
Bsp1286I GDGCHC 2 cut(s) 291, 472
Bsp143I GATC 6 cut(s) 141, 163, 168, 400, 1185, 1194
BspACI CCGC 4 cut(s) 193, 975, 1030, 1328
BspANI GGCC 3 cut(s) 57, 116, 239
BspCNI CTCAG 2 cut(s) 456, 1174
BspHI TCATGA 2 cut(s) 637, 1263
BspLI GGNNCC 5 cut(s) 64, 92, 571, 797, 1144
BspMI ACCTGC 2 cut(s) 711, 829
BspPI GGATC 1 cut(s) 149
BspQI GCTCTTC 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 569
BspTNI GGTCTC 2 cut(s) 307, 1292
BsrI ACTGG 4 cut(s) 45, 704, 839, 1385
BssECI CCNNGG 5 cut(s) 58, 72, 472, 1146, 1404
BssMI GATC 6 cut(s) 141, 163, 168, 400, 1185, 1194
BssNAI GTATAC 1 cut(s) 391
BssT1I CCWWGG 3 cut(s) 58, 72, 472
Bst1107I GTATAC 1 cut(s) 391
Bst2UI CCWGG 3 cut(s) 885, 1284, 1406
Bst4CI ACNGT 1 cut(s) 999
Bst6I CTCTTC 2 cut(s) 296, 999
BstAPI GCANNNNNTGC 1 cut(s) 533
BstC8I GCNNGC 6 cut(s) 241, 314, 622, 852, 979, 1070
BstDEI CTNAG 2 cut(s) 464, 1182
BstDSI CCRYGG 1 cut(s) 1146
BstF5I GGATG 6 cut(s) 162, 205, 331, 433, 868, 1037
BstH2I RGCGCY 1 cut(s) 490
BstHHI GCGC 1 cut(s) 489
BstKTI GATC 6 cut(s) 144, 166, 171, 403, 1188, 1197
BstMAI GTCTC 2 cut(s) 307, 1292
BstMBI GATC 6 cut(s) 141, 163, 168, 400, 1185, 1194
BstMWI GCNNNNNNNGC 6 cut(s) 28, 533, 1318, 1327, 1339, 1363
BstNI CCWGG 3 cut(s) 885, 1284, 1406
BstSCI CCNGG 3 cut(s) 883, 1282, 1404
BstSLI GKGCMC 1 cut(s) 472
BstV1I GCAGC 3 cut(s) 40, 1342, 1369
BstV2I GAAGAC 1 cut(s) 1083
BstX2I RGATCY 2 cut(s) 141, 1185
BstYI RGATCY 2 cut(s) 141, 1185
BstZ17I GTATAC 1 cut(s) 391
BsuRI GGCC 3 cut(s) 57, 116, 239
BtgI CCRYGG 1 cut(s) 1146
BtsCI GGATG 6 cut(s) 162, 205, 331, 433, 868, 1037
BtsIMutI CAGTG 2 cut(s) 364, 846
BveI ACCTGC 2 cut(s) 711, 829
Cac8I GCNNGC 6 cut(s) 241, 314, 622, 852, 979, 1070
CciI TCATGA 2 cut(s) 637, 1263
CfoI GCGC 1 cut(s) 489
Cfr13I GGNCC 3 cut(s) 811, 881, 1143
CseI GACGC 2 cut(s) 1079, 1387
CsiI ACCWGGT 2 cut(s) 883, 1282
Csp6I GTAC 2 cut(s) 340, 716
CspCI CAANNNNNGTGG 2 cut(s) 198, 233
CviAII CATG 6 cut(s) 83, 106, 265, 591, 638, 1264
CviQI GTAC 2 cut(s) 340, 716
DdeI CTNAG 2 cut(s) 464, 1182
DpnI GATC 6 cut(s) 143, 165, 170, 402, 1187, 1196
DpnII GATC 6 cut(s) 141, 163, 168, 400, 1185, 1194
DraIII CACNNNGTG 1 cut(s) 1216
DriI GACNNNNNGTC 1 cut(s) 586
EaeI YGGCCR 2 cut(s) 114, 237
Eam1104I CTCTTC 2 cut(s) 296, 999
Eam1105I GACNNNNNGTC 1 cut(s) 586
EarI CTCTTC 2 cut(s) 296, 999
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 3 cut(s) 58, 72, 472
Eco24I GRGCYC 1 cut(s) 291
Eco31I GGTCTC 2 cut(s) 307, 1292
Eco32I GATATC 2 cut(s) 765, 961
Eco47I GGWCC 3 cut(s) 811, 881, 1143
Eco53kI GAGCTC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 732
EcoICRI GAGCTC 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 683
EcoRII CCWGG 3 cut(s) 883, 1282, 1404
EcoRV GATATC 2 cut(s) 765, 961
EcoT14I CCWWGG 3 cut(s) 58, 72, 472
EcoT38I GRGCYC 1 cut(s) 291
ErhI CCWWGG 3 cut(s) 58, 72, 472
FaeI CATG 6 cut(s) 86, 109, 268, 594, 641, 1267
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 1 cut(s) 532
FatI CATG 6 cut(s) 82, 105, 264, 590, 637, 1263
FauNDI CATATG 1 cut(s) 529
FbaI TGATCA 1 cut(s) 163
FblI GTMKAC 2 cut(s) 78, 390
Fnu4HI GCNGC 4 cut(s) 29, 1328, 1331, 1358
FokI GGATG 6 cut(s) 169, 192, 338, 440, 875, 1024
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 4 cut(s) 29, 1328, 1331, 1358
FspBI CTAG 3 cut(s) 87, 333, 1233
GlaI GCGC 1 cut(s) 488
GluI GCNGC 4 cut(s) 29, 1328, 1331, 1358
HaeII RGCGCY 1 cut(s) 490
HaeIII GGCC 3 cut(s) 57, 116, 239
HgaI GACGC 2 cut(s) 1079, 1387
HhaI GCGC 1 cut(s) 489
Hin1II CATG 6 cut(s) 86, 109, 268, 594, 641, 1267
Hin6I GCGC 1 cut(s) 487
HinP1I GCGC 1 cut(s) 487
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 3 cut(s) 479, 520, 869
HphI GGTGA 6 cut(s) 244, 296, 488, 899, 1189, 1234
Hpy166II GTNNAC 6 cut(s) 79, 367, 391, 705, 1035, 1146
Hpy188I TCNGA 8 cut(s) 168, 405, 454, 651, 762, 800, 1095, 1257
Hpy8I GTNNAC 6 cut(s) 79, 367, 391, 705, 1035, 1146
HpyAV CCTTC 4 cut(s) 142, 1133, 1145, 1252
HpyCH4III ACNGT 1 cut(s) 999
HpyCH4V TGCA 6 cut(s) 28, 527, 644, 784, 824, 931
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 533, 1318, 1327, 1339, 1363
HpyF3I CTNAG 2 cut(s) 464, 1182
Hsp92II CATG 6 cut(s) 86, 109, 268, 594, 641, 1267
HspAI GCGC 1 cut(s) 487
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 6 cut(s) 141, 163, 168, 400, 1185, 1194
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 3 cut(s) 220, 1318, 1386
Lsp1109I GCAGC 3 cut(s) 40, 1342, 1369
LweI GCATC 4 cut(s) 15, 180, 631, 853
MabI ACCWGGT 2 cut(s) 883, 1282
MaeI CTAG 3 cut(s) 87, 333, 1233
MaeIII GTNAC 1 cut(s) 904
MalI GATC 6 cut(s) 143, 165, 170, 402, 1187, 1196
MboI GATC 6 cut(s) 141, 163, 168, 400, 1185, 1194
MfeI CAATTG 1 cut(s) 825
MflI RGATCY 2 cut(s) 141, 1185
MhlI GDGCHC 2 cut(s) 291, 472
MlsI TGGCCA 2 cut(s) 116, 239
MluCI AATT 8 cut(s) 126, 180, 683, 689, 825, 833, 898, 923
MluNI TGGCCA 2 cut(s) 116, 239
MlyI GAGTC 1 cut(s) 514
MmeI TCCRAC 1 cut(s) 1065
Mox20I TGGCCA 2 cut(s) 116, 239
MroXI GAANNNNTTC 1 cut(s) 953
MscI TGGCCA 2 cut(s) 116, 239
MseI TTAA 1 cut(s) 1130
MslI CAYNNNNRTG 2 cut(s) 110, 210
Msp20I TGGCCA 2 cut(s) 116, 239
MspA1I CMGCKG 1 cut(s) 977
MspR9I CCNGG 3 cut(s) 885, 1284, 1406
MunI CAATTG 1 cut(s) 825
MvaI CCWGG 3 cut(s) 885, 1284, 1406
MwoI GCNNNNNNNGC 6 cut(s) 28, 533, 1318, 1327, 1339, 1363
NdeI CATATG 1 cut(s) 529
NdeII GATC 6 cut(s) 141, 163, 168, 400, 1185, 1194
NlaIII CATG 6 cut(s) 86, 109, 268, 594, 641, 1267
NlaIV GGNNCC 5 cut(s) 64, 92, 571, 797, 1144
NmuCI GTSAC 1 cut(s) 904
PagI TCATGA 2 cut(s) 637, 1263
PciSI GCTCTTC 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 953
PfeI GAWTC 2 cut(s) 479, 869
PflFI GACNNNGTC 2 cut(s) 299, 1284
PkrI GCNGC 4 cut(s) 30, 1329, 1332, 1359
PleI GAGTC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 514
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 3 cut(s) 883, 1282, 1404
PspGI CCWGG 3 cut(s) 883, 1282, 1404
PspN4I GGNNCC 5 cut(s) 64, 92, 571, 797, 1144
PspPI GGNCC 3 cut(s) 811, 881, 1143
PsrI GAACNNNNNNTAC 2 cut(s) 594, 626
PsuI RGATCY 2 cut(s) 141, 1185
PsyI GACNNNGTC 2 cut(s) 299, 1284
RsaI GTAC 2 cut(s) 341, 717
RsaNI GTAC 2 cut(s) 340, 716
RseI CAYNNNNRTG 2 cut(s) 110, 210
SacI GAGCTC 1 cut(s) 291
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 1130
SatI GCNGC 4 cut(s) 29, 1328, 1331, 1358
Sau3AI GATC 6 cut(s) 141, 163, 168, 400, 1185, 1194
Sau96I GGNCC 3 cut(s) 811, 881, 1143
ScaI AGTACT 1 cut(s) 341
SchI GAGTC 1 cut(s) 514
ScrFI CCNGG 3 cut(s) 885, 1284, 1406
SduI GDGCHC 2 cut(s) 291, 472
SexAI ACCWGGT 2 cut(s) 883, 1282
SfaNI GCATC 4 cut(s) 15, 180, 631, 853
SinI GGWCC 3 cut(s) 811, 881, 1143
SmiMI CAYNNNNRTG 2 cut(s) 110, 210
SmlI CTYRAG 1 cut(s) 1289
SmoI CTYRAG 1 cut(s) 1289
Sse9I AATT 8 cut(s) 126, 180, 683, 689, 825, 833, 898, 923
SsiI CCGC 4 cut(s) 193, 975, 1030, 1328
SspMI CTAG 3 cut(s) 87, 333, 1233
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 3 cut(s) 883, 1282, 1404
StyI CCWWGG 3 cut(s) 58, 72, 472
TaaI ACNGT 1 cut(s) 999
TaqI TCGA 3 cut(s) 294, 957, 1191
TasI AATT 8 cut(s) 126, 180, 683, 689, 825, 833, 898, 923
TatI WGTACW 1 cut(s) 339
TauI GCSGC 1 cut(s) 1330
TfiI GAWTC 2 cut(s) 479, 869
Tru1I TTAA 1 cut(s) 1130
Tru9I TTAA 1 cut(s) 1130
TscAI CASTG 2 cut(s) 364, 846
TseFI GTSAC 1 cut(s) 904
TseI GCWGC 3 cut(s) 28, 1330, 1357
Tsp45I GTSAC 1 cut(s) 904
TspDTI ATGAA 3 cut(s) 494, 626, 1280
TspGWI ACGGA 1 cut(s) 1163
TspRI CASTG 2 cut(s) 364, 846
Tth111I GACNNNGTC 2 cut(s) 299, 1284
VpaK11BI GGWCC 3 cut(s) 811, 881, 1143
XapI RAATTY 3 cut(s) 180, 683, 689
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XmiI GTMKAC 2 cut(s) 78, 390
XmnI GAANNNNTTC 1 cut(s) 953
XspI CTAG 3 cut(s) 87, 333, 1233
ZrmI AGTACT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.