Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0014952

Physical Location & Seq

Genomic Coordinates Forward (+)

40561248 .. 40562417

Gene Structure 1170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00419010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGAAAACAAAGGGAGTGTGCTGATGCAGCGATATGAATTGGGGAGACTGTTAGGCCAAGGAACCTTTGCCAAGGTATACCATGGTAGGAACCTCAAAACTGGCATGAGTGTGGCCATAAAGATAATTGATAAAGAGAGGGTCTTGAAGGTCGGGATGATTGATCAGATCAAGCGTGAAATTTCTGTGATGCGATTGATTAGACATCCAAATGTGGTGGAGCTTTACGAGGTAATGGCCAGCAAAACCAGGATTTACTTTGTCATGGAGTATGTCAAAGGTGGTGAGCTCTTCGACAAGGTTTCCAAAGGCAAGCTAAAGGAGGATGTTGCTAGAAAGTACTTTCAACAGCTCATCAGTGCTGTTGACTACTGCCACAGTAGAGGTGTATACCATCGTGATCTGAAACCGGAAAACCTACTTTTGGATGAGAATGGAAATCTCAAGGTTTCAGATTTCGGACTGAGTGCCCTTGGTGAATCCAAGCGCCAAGATGGATTGCTTCATACAACCTGTGGGACTCCTGCATATGTTGCCCCAGAAGTAATAAACAGGAAAGGCTATGATGGTGCCAAAGCTGACATTTGGTCATGTGGGGTGATATTATATGTTCTATTGGCTGGCTATCTTCCATTTCATGATGCAAATCTGATGGAGTTGTATAGGAAGATTGGTAAGGGGGAATTCAAATTCCCTAACTGGTTTACTCCTGAAGTACGCAGGTTGCTGTCAAAGATATTCGACCCAAATCCAAATACTCGGATATCTTTGTCTAAAATAATGCAATCTTCTTGGTTCCGTAAGGGGCTGGTCCAAAAGCCTGCAATTGCTGAAGTACCAGTGAAAGAGCTATCCCCTCTGGATGCTGATGCCATTTTTGGACCTGGTGAAGATAACAATTCTGTGACAGAGGCAAAGCAAGAATTAGCGCAGAAGCCGTCTAACTTGAACGCTTTTGATATCATCTCCTACTCGGCTGGCTTTGACTTGTCTGGACTGTTTGAGGAGGCTGATCAGAAAAAAGATGTGCGGTTTACATCCAACAAACCTGCTTCAACCATCATCAGCAAGCTGGAAGACATAGCCAAGCGTCTGAGACTTAAAATCAAGAAGAAGGATGGAGGGTTGTTGAGTATGGAAGGGTCCACGGAAGGTAGGAAGGGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1901701 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

389

Amino Acids

43.78

Weight (kDa)

9.36

Isoelectric Point (pI)

24.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	12 - 266	5.5e-78	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	13 - 262	9.5e-43	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	81 - 167	4e-06	ABC1 atypical kinase-like domain
Kinase-like	PF14531	103 - 250	2.8e-07	Kinase-like
NAF	PF03822	313 - 371	2.5e-24	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01810 AT5G01810 AT5G01810
fragaria_vesca	FvH4_6g10210
malus_domestica	MD04G1171600.v1.1 MD12G1185000.v1.1
prunus_persica	Prupe.6G290400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0460951
rosa_laevigata	RLG00000024964
rosa_multiflora	Rmu_sc0021377.1_g000007
rosa_roxburghii	Rroxscaffold_6G00419010
rosa_rugosa	Rorug03G0047100
rosa_samantha	Rh3AG104600 Rh3BG108300 Rh3DG110100
rosa_wichuraiana	Rw3G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	711, 1057
AccB1I	GGYRCC	1 cut(s)	569
AccI	GTMKAC	2 cut(s)	78, 390
AciI	CCGC	1 cut(s)	1030
AcoI	YGGCCR	2 cut(s)	114, 237
AcsI	RAATTY	3 cut(s)	180, 683, 689
AcuI	CTGAAG	2 cut(s)	732, 852
AfaI	GTAC	3 cut(s)	341, 717, 837
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	5 cut(s)	148, 347, 688, 949, 1056
AhdI	GACNNNNNGTC	1 cut(s)	586
AjnI	CCWGG	2 cut(s)	248, 883
AluBI	AGCT	7 cut(s)	223, 289, 316, 352, 578, 850, 1072
AluI	AGCT	7 cut(s)	223, 289, 316, 352, 578, 850, 1072
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	2 cut(s)	40, 1090
AoxI	GGCC	3 cut(s)	55, 114, 237
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	3 cut(s)	180, 683, 689
AspLEI	GCGC	2 cut(s)	489, 931
AspS9I	GGNCC	3 cut(s)	811, 881, 1143
AsuHPI	GGTGA	4 cut(s)	296, 488, 610, 899
AvaII	GGWCC	3 cut(s)	811, 881, 1143
BaeGI	GKGCMC	1 cut(s)	472
BalI	TGGCCA	2 cut(s)	116, 239
BanI	GGYRCC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	1083
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	6 cut(s)	402, 488, 560, 646, 1067, 1112
BceAI	ACGGC	1 cut(s)	922
BciT130I	CCWGG	2 cut(s)	250, 885
BclI	TGATCA	2 cut(s)	163, 1012
BcoDI	GTCTC	2 cut(s)	40, 1090
BfaI	CTAG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	490
BfuAI	ACCTGC	2 cut(s)	711, 1057
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
BmcAI	AGTACT	1 cut(s)	341
Bme1390I	CCNGG	2 cut(s)	250, 885
Bme18I	GGWCC	3 cut(s)	811, 881, 1143
BmeRI	GACNNNNNGTC	1 cut(s)	586
BmgT120I	GGNCC	3 cut(s)	811, 881, 1143
BmiI	GGNNCC	5 cut(s)	64, 92, 571, 797, 1144
BmrFI	CCNGG	2 cut(s)	250, 885
BmsI	GCATC	5 cut(s)	15, 180, 631, 853, 859
BpiI	GAAGAC	1 cut(s)	1083
BpuEI	CTTGAG	1 cut(s)	428
BsaBI	GATNNNNATC	1 cut(s)	645
BsaJI	CCNNGG	5 cut(s)	58, 72, 82, 472, 1146
BsaWI	WCCGGW	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse1I	ACTGG	3 cut(s)	106, 704, 839
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	2 cut(s)	250, 885
BseDI	CCNNGG	5 cut(s)	58, 72, 82, 472, 1146
BseGI	GGATG	7 cut(s)	162, 205, 331, 433, 868, 1037, 1123
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMII	CTCAG	2 cut(s)	455, 1085
BseNI	ACTGG	3 cut(s)	106, 704, 839
BseRI	GAGGAG	1 cut(s)	1019
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	3 cut(s)	57, 116, 239
BshNI	GGYRCC	1 cut(s)	569
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	410
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	2 cut(s)	40, 1090
BsmFI	GGGAC	1 cut(s)	532
BsnI	GGCC	3 cut(s)	57, 116, 239
Bsp1286I	GDGCHC	2 cut(s)	291, 472
Bsp143I	GATC	4 cut(s)	163, 168, 400, 1012
Bsp19I	CCATGG	1 cut(s)	82
BspACI	CCGC	1 cut(s)	1030
BspANI	GGCC	3 cut(s)	57, 116, 239
BspCNI	CTCAG	2 cut(s)	456, 1086
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	5 cut(s)	64, 92, 571, 797, 1144
BspMI	ACCTGC	2 cut(s)	711, 1057
BspQI	GCTCTTC	1 cut(s)	296
BspT107I	GGYRCC	1 cut(s)	569
BsrI	ACTGG	3 cut(s)	106, 704, 839
BssECI	CCNNGG	5 cut(s)	58, 72, 82, 472, 1146
BssMI	GATC	4 cut(s)	163, 168, 400, 1012
BssNAI	GTATAC	2 cut(s)	79, 391
BssT1I	CCWWGG	4 cut(s)	58, 72, 82, 472
Bst1107I	GTATAC	2 cut(s)	79, 391
Bst2UI	CCWGG	2 cut(s)	250, 885
Bst4CI	ACNGT	3 cut(s)	51, 380, 999
Bst6I	CTCTTC	1 cut(s)	296
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstC8I	GCNNGC	6 cut(s)	241, 314, 622, 822, 979, 1070
BstDEI	CTNAG	2 cut(s)	464, 1094
BstDSI	CCRYGG	2 cut(s)	82, 1146
BstF5I	GGATG	7 cut(s)	162, 205, 331, 433, 868, 1037, 1123
BstH2I	RGCGCY	1 cut(s)	490
BstHHI	GCGC	2 cut(s)	489, 931
BstKTI	GATC	4 cut(s)	166, 171, 403, 1015
BstMAI	GTCTC	2 cut(s)	40, 1090
BstMBI	GATC	4 cut(s)	163, 168, 400, 1012
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 533
BstNI	CCWGG	2 cut(s)	250, 885
BstSCI	CCNGG	2 cut(s)	248, 883
BstSLI	GKGCMC	1 cut(s)	472
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	1083
BstZ17I	GTATAC	2 cut(s)	79, 391
BsuRI	GGCC	3 cut(s)	57, 116, 239
BtgI	CCRYGG	2 cut(s)	82, 1146
BtsCI	GGATG	7 cut(s)	162, 205, 331, 433, 868, 1037, 1123
BtsIMutI	CAGTG	2 cut(s)	364, 846
BveI	ACCTGC	2 cut(s)	711, 1057
Cac8I	GCNNGC	6 cut(s)	241, 314, 622, 822, 979, 1070
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	2 cut(s)	489, 931
Cfr13I	GGNCC	3 cut(s)	811, 881, 1143
CseI	GACGC	1 cut(s)	1079
CsiI	ACCWGGT	1 cut(s)	883
Csp6I	GTAC	3 cut(s)	340, 716, 836
CspCI	CAANNNNNGTGG	2 cut(s)	198, 233
CviAII	CATG	5 cut(s)	83, 106, 265, 591, 638
CviQI	GTAC	3 cut(s)	340, 716, 836
DdeI	CTNAG	2 cut(s)	464, 1094
DpnI	GATC	4 cut(s)	165, 170, 402, 1014
DpnII	GATC	4 cut(s)	163, 168, 400, 1012
DriI	GACNNNNNGTC	1 cut(s)	586
EaeI	YGGCCR	2 cut(s)	114, 237
Eam1104I	CTCTTC	1 cut(s)	296
Eam1105I	GACNNNNNGTC	1 cut(s)	586
EarI	CTCTTC	1 cut(s)	296
Ecl136II	GAGCTC	1 cut(s)	289
Eco130I	CCWWGG	4 cut(s)	58, 72, 82, 472
Eco24I	GRGCYC	1 cut(s)	291
Eco32I	GATATC	2 cut(s)	765, 961
Eco47I	GGWCC	3 cut(s)	811, 881, 1143
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	2 cut(s)	732, 852
EcoICRI	GAGCTC	1 cut(s)	289
EcoRI	GAATTC	1 cut(s)	683
EcoRII	CCWGG	2 cut(s)	248, 883
EcoRV	GATATC	2 cut(s)	765, 961
EcoT14I	CCWWGG	4 cut(s)	58, 72, 82, 472
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	4 cut(s)	58, 72, 82, 472
FaeI	CATG	5 cut(s)	86, 109, 268, 594, 641
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	5 cut(s)	82, 105, 264, 590, 637
FauNDI	CATATG	1 cut(s)	529
FbaI	TGATCA	2 cut(s)	163, 1012
FblI	GTMKAC	2 cut(s)	78, 390
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	7 cut(s)	169, 192, 338, 440, 875, 1024, 1130
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	2 cut(s)	488, 930
GluI	GCNGC	1 cut(s)	29
HaeII	RGCGCY	1 cut(s)	490
HaeIII	GGCC	3 cut(s)	57, 116, 239
HapII	CCGG	1 cut(s)	410
HgaI	GACGC	1 cut(s)	1079
HhaI	GCGC	2 cut(s)	489, 931
Hin1II	CATG	5 cut(s)	86, 109, 268, 594, 641
Hin6I	GCGC	2 cut(s)	487, 929
HinP1I	GCGC	2 cut(s)	487, 929
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	2 cut(s)	479, 520
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	4 cut(s)	296, 488, 610, 899
Hpy166II	GTNNAC	6 cut(s)	79, 367, 391, 705, 1035, 1146
Hpy188I	TCNGA	8 cut(s)	168, 405, 454, 461, 651, 762, 1017, 1095
Hpy188III	TCNNGA	8 cut(s)	145, 154, 398, 638, 710, 860, 993, 1108
Hpy8I	GTNNAC	6 cut(s)	79, 367, 391, 705, 1035, 1146
HpyAV	CCTTC	5 cut(s)	142, 1108, 1133, 1145, 1153
HpyCH4III	ACNGT	3 cut(s)	51, 380, 999
HpyCH4V	TGCA	5 cut(s)	28, 527, 644, 784, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 533
HpyF3I	CTNAG	2 cut(s)	464, 1094
Hsp92II	CATG	5 cut(s)	86, 109, 268, 594, 641
HspAI	GCGC	2 cut(s)	487, 929
Ksp22I	TGATCA	2 cut(s)	163, 1012
Kzo9I	GATC	4 cut(s)	163, 168, 400, 1012
LguI	GCTCTTC	1 cut(s)	296
LmnI	GCTCC	1 cut(s)	220
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	5 cut(s)	15, 180, 631, 853, 859
MabI	ACCWGGT	1 cut(s)	883
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	904
MalI	GATC	4 cut(s)	165, 170, 402, 1014
MboI	GATC	4 cut(s)	163, 168, 400, 1012
MboII	GAAGA	7 cut(s)	283, 620, 679, 780, 902, 1088, 1123
MfeI	CAATTG	1 cut(s)	825
MhlI	GDGCHC	2 cut(s)	291, 472
MlsI	TGGCCA	2 cut(s)	116, 239
MluCI	AATT	8 cut(s)	38, 126, 180, 683, 689, 825, 898, 923
MluNI	TGGCCA	2 cut(s)	116, 239
MlyI	GAGTC	1 cut(s)	514
MmeI	TCCRAC	1 cut(s)	1065
Mox20I	TGGCCA	2 cut(s)	116, 239
MscI	TGGCCA	2 cut(s)	116, 239
MseI	TTAA	1 cut(s)	1101
MslI	CAYNNNNRTG	2 cut(s)	110, 210
Msp20I	TGGCCA	2 cut(s)	116, 239
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	2 cut(s)	250, 885
MunI	CAATTG	1 cut(s)	825
MvaI	CCWGG	2 cut(s)	250, 885
MwoI	GCNNNNNNNGC	2 cut(s)	28, 533
NcoI	CCATGG	1 cut(s)	82
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	4 cut(s)	163, 168, 400, 1012
NlaIII	CATG	5 cut(s)	86, 109, 268, 594, 641
NlaIV	GGNNCC	5 cut(s)	64, 92, 571, 797, 1144
NmeAIII	GCCGAG	1 cut(s)	953
NmuCI	GTSAC	1 cut(s)	904
PagI	TCATGA	1 cut(s)	637
PciSI	GCTCTTC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	248, 883
PspGI	CCWGG	2 cut(s)	248, 883
PspN4I	GGNNCC	5 cut(s)	64, 92, 571, 797, 1144
PspPI	GGNCC	3 cut(s)	811, 881, 1143
RsaI	GTAC	3 cut(s)	341, 717, 837
RsaNI	GTAC	3 cut(s)	340, 716, 836
RseI	CAYNNNNRTG	2 cut(s)	110, 210
SacI	GAGCTC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	1101
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	4 cut(s)	163, 168, 400, 1012
Sau96I	GGNCC	3 cut(s)	811, 881, 1143
ScaI	AGTACT	1 cut(s)	341
SchI	GAGTC	1 cut(s)	514
ScrFI	CCNGG	2 cut(s)	250, 885
SduI	GDGCHC	2 cut(s)	291, 472
SexAI	ACCWGGT	1 cut(s)	883
SfaNI	GCATC	5 cut(s)	15, 180, 631, 853, 859
SinI	GGWCC	3 cut(s)	811, 881, 1143
SmiMI	CAYNNNNRTG	2 cut(s)	110, 210
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	8 cut(s)	38, 126, 180, 683, 689, 825, 898, 923
SsiI	CCGC	1 cut(s)	1030
SspMI	CTAG	1 cut(s)	333
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	248, 883
StyI	CCWWGG	4 cut(s)	58, 72, 82, 472
TaaI	ACNGT	3 cut(s)	51, 380, 999
TaqI	TCGA	2 cut(s)	294, 741
TasI	AATT	8 cut(s)	38, 126, 180, 683, 689, 825, 898, 923
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	1 cut(s)	1101
Tru9I	TTAA	1 cut(s)	1101
TscAI	CASTG	2 cut(s)	364, 846
TseFI	GTSAC	1 cut(s)	904
TseI	GCWGC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	904
TspDTI	ATGAA	3 cut(s)	51, 494, 626
TspGWI	ACGGA	2 cut(s)	788, 1163
TspRI	CASTG	2 cut(s)	364, 846
VpaK11BI	GGWCC	3 cut(s)	811, 881, 1143
XapI	RAATTY	3 cut(s)	180, 683, 689
XmiI	GTMKAC	2 cut(s)	78, 390
XspI	CTAG	1 cut(s)	333
ZrmI	AGTACT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.