MD12G1185000.v1.1

Non-specific serine threonine protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
26597295 .. 26600175
2881 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1185000.v1.1.491

Sequence Viewer

Length: 1452 bp
ATGGAGAAAAAAGGGAGCGTGTTGATGCAGCGGTATGAATTGGGGCGATTATTAGGGCAAGGAACCTTTGCCAAGGTTCACCATGCGAGGAACCTTAAAACCGGCATGAGTGTTGCGATTAAGATAATTGATAAAGAGAGGGTCTTGAAGGTCGGAATGATTGATCAGATTAAGCGAGAAATTTCTGTCATGCGACTGATTAGACACCCGAATGTTGTGGAGCTTTATGAGGTAATGGCCACCAAAACCAAGATTTACTTTGTCATGGAGTATGTCAAAGGCGGTGAGCTCTTCAACAAGGTTTCCAAAGGCAAGCTAAAAGAGGATGTTGCTAGGAAATATTTTCAGCAGCTCATCAGTGCTGTTGATTACTGCCATAGTCGAGGAGTCTGCCATCGGGATTTGAAACCAGAAAACCTACTTTTGGATGAGAATGAGGATCTAAAGGTTTCGGATTTCGGATTTAGTGCCCTTGGTGAATCTAAGCGCCAAGATGGTCTGCTTCATACAACCTGTGGAACCCCTGCATACGTTGCTCCAGAAGTAATAAACAGGAAAGGCTATGATGGCGCCAAGGCTGACATTTGGTCATGTGGGGTGGTGTTGTATGTTCTATTGGCTGGCTATCTCCCATTTCACGATTCAAATCTGATGGAGATGTATAGGAAGATTGGTAAGGGTGAATTCAAATTCCCGAACTGGTTTTCTCCGGAAGTACGCAGGTTGCTGTCAAAGATCATGGACCCGAATCCAAATACTCGGATATCCATTGCCAAAATTATGCAGAGTTCTTGGTGCCGGAAGGGACTCGTCCAGAAACCTGTAATTGCTGAGGTACCAATGAAAGAGCCAGCCCCTCTGGATGTTGATGCAATTTTTGGAGCTAATGAAGATAGCAATTCTTCTGTGGAGTCAAAGCAAGAATTATCAAAGCCATCTAACTTGAATGCTTTCGATATCATCTCCTACTCAGCAGGCTTTGACTTGTCTGGATTGTTTGAGCAGACAGATCAGAAAAAGGAAGTGCGGTTTACGTCCAACAAAACGGCCTCCACCATCATCTCTAAGCTGGAGGACATTGCCAAGCGTCTGAAACTGAAAATAAAGAAGTGGGATGGAGGGTTGTTGAAAATGGAAGGGTCCACAGAAGGCAGGAAGGGGGTGCTGGGCATTGAAACCGAGATATTTGAAATCACCCCGTCTTTTCATCTGGTAGAAGTGAAGAAGTCTAGTGGAGATACACTGGAGTATCGCAAGGCCATGAAGAAAGATATCAGACCAGCTCTCAAGGACATTGTTTGGACTTGGCAAGGAGAGGAGCAGCAGCAACAAGAAGAGCCACCAGAACTCGGGCAGCAGCTGCTGCAGCAACAAGAACAAGAGCTGCCACAACTAGGGCAGCAAGAGCAACAGCCTTCTCTGGCAATCCCAGTGCACGCAGTCGCACCCTAG

Protein Analysis

484

Amino Acids

54.63

Weight (kDa)

8.75

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 12 - 265 1.4e-77 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 13 - 262 1e-41 Protein tyrosine and serine/threonine kinase
Kinase-like PF14531 100 - 254 7.2e-07 Kinase-like
NAF PF03822 312 - 370 1.8e-23 NAF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01810 AT5G01810 AT5G01810
fragaria_vesca FvH4_6g10210
malus_domestica MD04G1171600.v1.1 MD12G1185000.v1.1
prunus_persica Prupe.6G290400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0460951
rosa_laevigata RLG00000024964
rosa_multiflora Rmu_sc0021377.1_g000007
rosa_roxburghii Rroxscaffold_6G00419010
rosa_rugosa Rorug03G0047100
rosa_samantha Rh3AG104600 Rh3BG108300 Rh3DG110100
rosa_wichuraiana Rw3G008920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 711
Acc65I GGTACC 1 cut(s) 835
AccB1I GGYRCC 3 cut(s) 569, 795, 835
AccIII TCCGGA 1 cut(s) 709
AciI CCGC 3 cut(s) 31, 282, 1027
AclWI GGATC 1 cut(s) 447
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 3 cut(s) 180, 683, 689
AcyI GRCGYC 1 cut(s) 570
AfaI GTAC 2 cut(s) 717, 837
AfiI CCNNNNNNNGG 3 cut(s) 424, 1349, 1394
AgsI TTSAA 9 cut(s) 148, 295, 406, 645, 688, 946, 1129, 1175, 1190
AhdI GACNNNNNGTC 1 cut(s) 586
AluBI AGCT 9 cut(s) 223, 289, 316, 352, 884, 1069, 1283, 1360, 1384
AluI AGCT 9 cut(s) 223, 289, 316, 352, 884, 1069, 1283, 1360, 1384
Alw21I GWGCWC 2 cut(s) 291, 1437
Alw44I GTGCAC 1 cut(s) 1433
AlwI GGATC 1 cut(s) 447
AlwNI CAGNNNCTG 2 cut(s) 1360, 1363
Ama87I CYCGRG 1 cut(s) 1349
Aor13HI TCCGGA 1 cut(s) 709
AoxI GGCC 3 cut(s) 237, 1047, 1257
ApaLI GTGCAC 1 cut(s) 1433
ApoI RAATTY 3 cut(s) 180, 683, 689
Asp700I GAANNNNTTC 1 cut(s) 950
Asp718I GGTACC 1 cut(s) 835
AspLEI GCGC 2 cut(s) 489, 572
AspS9I GGNCC 2 cut(s) 742, 1140
AsuHPI GGTGA 5 cut(s) 71, 296, 488, 692, 1186
AvaI CYCGRG 1 cut(s) 1349
AvaII GGWCC 2 cut(s) 742, 1140
BaeGI GKGCMC 2 cut(s) 472, 1437
BaeI ACNNNNGTAYC 2 cut(s) 1232, 1265
BalI TGGCCA 1 cut(s) 239
BanI GGYRCC 3 cut(s) 569, 795, 835
BanII GRGCYC 1 cut(s) 291
Bbv12I GWGCWC 2 cut(s) 291, 1437
BbvCI CCTCAGC 1 cut(s) 831
BccI CCATC 7 cut(s) 402, 488, 560, 646, 943, 1064, 1109
BceAI ACGGC 1 cut(s) 1062
BcgI CGANNNNNNTGC 2 cut(s) 372, 406
BclI TGATCA 1 cut(s) 163
BfaI CTAG 4 cut(s) 333, 1230, 1394, 1450
BfmI CTRYAG 1 cut(s) 1364
BfoI RGCGCY 2 cut(s) 490, 573
BfuAI ACCTGC 1 cut(s) 711
Bme18I GGWCC 2 cut(s) 742, 1140
BmeRI GACNNNNNGTC 1 cut(s) 586
BmeT110I CYCGRG 1 cut(s) 1349
BmgT120I GGNCC 2 cut(s) 742, 1140
BmiI GGNNCC 8 cut(s) 64, 92, 520, 571, 744, 797, 837, 1141
BmrI ACTGGG 1 cut(s) 1424
BmsI GCATC 2 cut(s) 15, 859
BmuI ACTGGG 1 cut(s) 1424
BpmI CTGGAG 3 cut(s) 522, 1091, 1265
Bpu10I CCTNAGC 1 cut(s) 831
BpuEI CTTGAG 1 cut(s) 1271
BsaBI GATNNNNATC 1 cut(s) 645
BsaHI GRCGYC 1 cut(s) 570
BsaJI CCNNGG 3 cut(s) 72, 472, 573
BsaWI WCCGGW 1 cut(s) 709
Bsc4I CCNNNNNNNGG 3 cut(s) 424, 1349, 1394
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 3 cut(s) 704, 1248, 1430
Bse3DI GCAATG 2 cut(s) 768, 1077
Bse8I GATNNNNATC 1 cut(s) 645
BseAI TCCGGA 1 cut(s) 709
BseDI CCNNGG 3 cut(s) 72, 472, 573
BseGI GGATG 4 cut(s) 331, 433, 868, 1120
BseJI GATNNNNATC 1 cut(s) 645
BseLI CCNNNNNNNGG 3 cut(s) 424, 1349, 1394
BseMI GCAATG 2 cut(s) 768, 1077
BseMII CTCAG 2 cut(s) 822, 984
BseNI ACTGG 3 cut(s) 704, 1248, 1430
BseRI GAGGAG 2 cut(s) 399, 1331
BseSI GKGCMC 2 cut(s) 472, 1437
BseYI CCCAGC 1 cut(s) 1165
BshFI GGCC 3 cut(s) 239, 1049, 1259
BshNI GGYRCC 3 cut(s) 569, 795, 835
BsiHKAI GWGCWC 2 cut(s) 291, 1437
BsiHKCI CYCGRG 1 cut(s) 1349
BsiSI CCGG 3 cut(s) 102, 710, 799
BslFI GGGAC 1 cut(s) 819
BslI CCNNNNNNNGG 3 cut(s) 424, 1349, 1394
BsmFI GGGAC 1 cut(s) 819
BsmI GAATGC 1 cut(s) 952
BsnI GGCC 3 cut(s) 239, 1049, 1259
BsoBI CYCGRG 1 cut(s) 1349
Bsp1286I GDGCHC 3 cut(s) 291, 472, 1437
Bsp13I TCCGGA 1 cut(s) 709
Bsp143I GATC 4 cut(s) 163, 439, 735, 1009
BspACI CCGC 3 cut(s) 31, 282, 1027
BspANI GGCC 3 cut(s) 239, 1049, 1259
BspCNI CTCAG 2 cut(s) 823, 983
BspEI TCCGGA 1 cut(s) 709
BspLI GGNNCC 8 cut(s) 64, 92, 520, 571, 744, 797, 837, 1141
BspMAI CTGCAG 1 cut(s) 1368
BspMI ACCTGC 1 cut(s) 711
BspPI GGATC 1 cut(s) 447
BspQI GCTCTTC 2 cut(s) 296, 1329
BspT107I GGYRCC 3 cut(s) 569, 795, 835
BsrDI GCAATG 2 cut(s) 768, 1077
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 3 cut(s) 704, 1248, 1430
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 3 cut(s) 72, 472, 573
BssMI GATC 4 cut(s) 163, 439, 735, 1009
BssNI GRCGYC 1 cut(s) 570
BssT1I CCWWGG 3 cut(s) 72, 472, 573
Bst6I CTCTTC 2 cut(s) 296, 1329
BstACI GRCGYC 1 cut(s) 570
BstAPI GCANNNNNTGC 3 cut(s) 533, 1360, 1363
BstC8I GCNNGC 5 cut(s) 314, 622, 852, 976, 1437
BstDEI CTNAG 4 cut(s) 483, 831, 970, 1065
BstF5I GGATG 4 cut(s) 331, 433, 868, 1120
BstH2I RGCGCY 2 cut(s) 490, 573
BstHHI GCGC 2 cut(s) 489, 572
BstKTI GATC 4 cut(s) 166, 442, 738, 1012
BstMBI GATC 4 cut(s) 163, 439, 735, 1009
BstMWI GCNNNNNNNGC 6 cut(s) 533, 567, 1360, 1363, 1366, 1405
BstSFI CTRYAG 1 cut(s) 1364
BstSLI GKGCMC 2 cut(s) 472, 1437
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
BsuRI GGCC 3 cut(s) 239, 1049, 1259
BtsCI GGATG 4 cut(s) 331, 433, 868, 1120
BtsIMutI CAGTG 3 cut(s) 364, 1241, 1437
BveI ACCTGC 1 cut(s) 711
Cac8I GCNNGC 5 cut(s) 314, 622, 852, 976, 1437
CaiI CAGNNNCTG 2 cut(s) 1360, 1363
CfoI GCGC 2 cut(s) 489, 572
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 742, 1140
CseI GACGC 1 cut(s) 1076
Csp6I GTAC 2 cut(s) 716, 836
CviAII CATG 7 cut(s) 83, 106, 190, 265, 591, 739, 1261
CviQI GTAC 2 cut(s) 716, 836
DdeI CTNAG 4 cut(s) 483, 831, 970, 1065
DinI GGCGCC 1 cut(s) 571
DpnI GATC 4 cut(s) 165, 441, 737, 1011
DpnII GATC 4 cut(s) 163, 439, 735, 1009
DriI GACNNNNNGTC 1 cut(s) 586
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 2 cut(s) 296, 1329
Eam1105I GACNNNNNGTC 1 cut(s) 586
EarI CTCTTC 2 cut(s) 296, 1329
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 3 cut(s) 72, 472, 573
Eco24I GRGCYC 1 cut(s) 291
Eco32I GATATC 3 cut(s) 765, 958, 1273
Eco47I GGWCC 2 cut(s) 742, 1140
Eco53kI GAGCTC 1 cut(s) 289
Eco88I CYCGRG 1 cut(s) 1349
EcoICRI GAGCTC 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 683
EcoRV GATATC 3 cut(s) 765, 958, 1273
EcoT14I CCWWGG 3 cut(s) 72, 472, 573
EcoT38I GRGCYC 1 cut(s) 291
EgeI GGCGCC 1 cut(s) 571
EheI GGCGCC 1 cut(s) 571
ErhI CCWWGG 3 cut(s) 72, 472, 573
FaeI CATG 7 cut(s) 86, 109, 193, 268, 594, 742, 1264
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 1 cut(s) 819
FatI CATG 7 cut(s) 82, 105, 189, 264, 590, 738, 1260
FbaI TGATCA 1 cut(s) 163
FokI GGATG 4 cut(s) 338, 440, 875, 1127
FriOI GRGCYC 1 cut(s) 291
FspBI CTAG 4 cut(s) 333, 1230, 1394, 1450
GlaI GCGC 2 cut(s) 488, 571
GsaI CCCAGC 1 cut(s) 1169
GsuI CTGGAG 3 cut(s) 522, 1091, 1265
HaeII RGCGCY 2 cut(s) 490, 573
HaeIII GGCC 3 cut(s) 239, 1049, 1259
HapII CCGG 3 cut(s) 102, 710, 799
HgaI GACGC 1 cut(s) 1076
HhaI GCGC 2 cut(s) 489, 572
Hin1I GRCGYC 1 cut(s) 570
Hin1II CATG 7 cut(s) 86, 109, 193, 268, 594, 742, 1264
Hin6I GCGC 2 cut(s) 487, 570
HinP1I GCGC 2 cut(s) 487, 570
HinfI GANTC 6 cut(s) 387, 479, 641, 748, 807, 911
HpaII CCGG 3 cut(s) 102, 710, 799
HphI GGTGA 5 cut(s) 71, 296, 488, 692, 1186
Hpy166II GTNNAC 4 cut(s) 79, 1032, 1143, 1435
Hpy188I TCNGA 9 cut(s) 155, 168, 454, 461, 651, 762, 1014, 1092, 1277
Hpy188III TCNNGA 9 cut(s) 145, 398, 539, 638, 694, 710, 814, 860, 990
Hpy8I GTNNAC 4 cut(s) 79, 1032, 1143, 1435
HpyAV CCTTC 6 cut(s) 142, 796, 1130, 1142, 1150, 1425
HpyCH4IV ACGT 2 cut(s) 531, 1034
HpyCH4V TGCA 6 cut(s) 28, 527, 784, 872, 1366, 1435
HpyF10VI GCNNNNNNNGC 6 cut(s) 533, 567, 1360, 1363, 1366, 1405
HpyF3I CTNAG 4 cut(s) 483, 831, 970, 1065
HpySE526I ACGT 2 cut(s) 531, 1034
Hsp92I GRCGYC 1 cut(s) 570
Hsp92II CATG 7 cut(s) 86, 109, 193, 268, 594, 742, 1264
HspAI GCGC 2 cut(s) 487, 570
KasI GGCGCC 1 cut(s) 569
Kpn2I TCCGGA 1 cut(s) 709
KpnI GGTACC 1 cut(s) 839
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 4 cut(s) 163, 439, 735, 1009
LguI GCTCTTC 2 cut(s) 296, 1329
LmnI GCTCC 5 cut(s) 15, 220, 541, 881, 1318
LweI GCATC 2 cut(s) 15, 859
MaeI CTAG 4 cut(s) 333, 1230, 1394, 1450
MaeII ACGT 2 cut(s) 531, 1034
MalI GATC 4 cut(s) 165, 441, 737, 1011
MboI GATC 4 cut(s) 163, 439, 735, 1009
MboII GAAGA 7 cut(s) 283, 679, 894, 902, 1234, 1276, 1346
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 3 cut(s) 291, 472, 1437
MlsI TGGCCA 1 cut(s) 239
MluNI TGGCCA 1 cut(s) 239
Mly113I GGCGCC 1 cut(s) 570
MlyI GAGTC 3 cut(s) 396, 801, 920
MmeI TCCRAC 2 cut(s) 133, 1062
Mox20I TGGCCA 1 cut(s) 239
MroI TCCGGA 1 cut(s) 709
MroXI GAANNNNTTC 1 cut(s) 950
MscI TGGCCA 1 cut(s) 239
MseI TTAA 3 cut(s) 96, 120, 171
MslI CAYNNNNRTG 1 cut(s) 210
Msp20I TGGCCA 1 cut(s) 239
MspA1I CMGCKG 2 cut(s) 31, 1360
MspI CCGG 3 cut(s) 102, 710, 799
Mva1269I GAATGC 1 cut(s) 952
MwoI GCNNNNNNNGC 6 cut(s) 533, 567, 1360, 1363, 1366, 1405
NarI GGCGCC 1 cut(s) 570
NdeII GATC 4 cut(s) 163, 439, 735, 1009
NlaIII CATG 7 cut(s) 86, 109, 193, 268, 594, 742, 1264
NlaIV GGNNCC 8 cut(s) 64, 92, 520, 571, 744, 797, 837, 1141
PciSI GCTCTTC 2 cut(s) 296, 1329
PctI GAATGC 1 cut(s) 952
PdmI GAANNNNTTC 1 cut(s) 950
PfeI GAWTC 3 cut(s) 479, 641, 748
PleI GAGTC 3 cut(s) 395, 801, 919
PluTI GGCGCC 1 cut(s) 573
PpsI GAGTC 3 cut(s) 395, 801, 919
Psp124BI GAGCTC 1 cut(s) 291
PspFI CCCAGC 1 cut(s) 1165
PspN4I GGNNCC 8 cut(s) 64, 92, 520, 571, 744, 797, 837, 1141
PspPI GGNCC 2 cut(s) 742, 1140
PstI CTGCAG 1 cut(s) 1368
PstNI CAGNNNCTG 2 cut(s) 1360, 1363
PsuI RGATCY 1 cut(s) 439
PvuII CAGCTG 1 cut(s) 1360
RsaI GTAC 2 cut(s) 717, 837
RsaNI GTAC 2 cut(s) 716, 836
RseI CAYNNNNRTG 1 cut(s) 210
SacI GAGCTC 1 cut(s) 291
SapI GCTCTTC 2 cut(s) 296, 1329
SaqAI TTAA 3 cut(s) 96, 120, 171
Sau3AI GATC 4 cut(s) 163, 439, 735, 1009
Sau96I GGNCC 2 cut(s) 742, 1140
SchI GAGTC 3 cut(s) 396, 801, 920
SduI GDGCHC 3 cut(s) 291, 472, 1437
SfaNI GCATC 2 cut(s) 15, 859
SfcI CTRYAG 1 cut(s) 1364
SfoI GGCGCC 1 cut(s) 571
SinI GGWCC 2 cut(s) 742, 1140
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 1286
SmoI CTYRAG 1 cut(s) 1286
SsiI CCGC 3 cut(s) 31, 282, 1027
SspDI GGCGCC 1 cut(s) 569
SspI AATATT 1 cut(s) 341
SspMI CTAG 4 cut(s) 333, 1230, 1394, 1450
SstI GAGCTC 1 cut(s) 291
StyI CCWWGG 3 cut(s) 72, 472, 573
TaiI ACGT 2 cut(s) 534, 1037
TaqI TCGA 2 cut(s) 382, 954
TfiI GAWTC 3 cut(s) 479, 641, 748
Tru1I TTAA 3 cut(s) 96, 120, 171
Tru9I TTAA 3 cut(s) 96, 120, 171
TscAI CASTG 3 cut(s) 364, 1248, 1437
TspDTI ATGAA 6 cut(s) 51, 494, 857, 903, 1196, 1277
TspRI CASTG 3 cut(s) 364, 1248, 1437
VneI GTGCAC 1 cut(s) 1433
VpaK11BI GGWCC 2 cut(s) 742, 1140
XapI RAATTY 3 cut(s) 180, 683, 689
XmnI GAANNNNTTC 1 cut(s) 950
XspI CTAG 4 cut(s) 333, 1230, 1394, 1450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.