No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g12090 |
| rosa_chinensis | RchiOBHm_Chr5g0008461 |
| rosa_laevigata | RLG00000031789 |
| rosa_roxburghii | Rroxscaffold_1G00065520 |
| rosa_samantha | Rh5AG085100 Rh5AG085600 Rh7AG361500 Rh7BG353000 Rh7CG380100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 612, 782 |
| AclWI | GGATC | 3 cut(s) | 316, 678, 706 |
| AcsI | RAATTY | 5 cut(s) | 244, 752, 791, 943, 968 |
| AcuI | CTGAAG | 1 cut(s) | 587 |
| AfaI | GTAC | 3 cut(s) | 100, 271, 727 |
| AfeI | AGCGCT | 1 cut(s) | 1002 |
| AflII | CTTAAG | 1 cut(s) | 278 |
| AflIII | ACRYGT | 1 cut(s) | 101 |
| AgsI | TTSAA | 6 cut(s) | 259, 520, 623, 937, 943, 968 |
| AluBI | AGCT | 4 cut(s) | 197, 277, 893, 902 |
| AluI | AGCT | 4 cut(s) | 197, 277, 893, 902 |
| Alw21I | GWGCWC | 2 cut(s) | 241, 409 |
| Alw26I | GTCTC | 1 cut(s) | 872 |
| AlwI | GGATC | 3 cut(s) | 316, 678, 706 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 587, 853 |
| Aor51HI | AGCGCT | 1 cut(s) | 1002 |
| ApeKI | GCWGC | 2 cut(s) | 491, 832 |
| ApoI | RAATTY | 5 cut(s) | 244, 752, 791, 943, 968 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 116, 148 |
| AspLEI | GCGC | 1 cut(s) | 1003 |
| AsuHPI | GGTGA | 4 cut(s) | 80, 736, 796, 836 |
| AxyI | CCTNAGG | 1 cut(s) | 326 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 91, 123 |
| Bbv12I | GWGCWC | 2 cut(s) | 241, 409 |
| BbvI | GCAGC | 2 cut(s) | 478, 819 |
| BccI | CCATC | 2 cut(s) | 86, 386 |
| BclI | TGATCA | 2 cut(s) | 678, 703 |
| BcoDI | GTCTC | 1 cut(s) | 872 |
| BfaI | CTAG | 3 cut(s) | 495, 813, 1008 |
| BfmI | CTRYAG | 1 cut(s) | 579 |
| BfoI | RGCGCY | 1 cut(s) | 1004 |
| BfrI | CTTAAG | 1 cut(s) | 278 |
| BisI | GCNGC | 2 cut(s) | 492, 833 |
| BlsI | GCNGC | 2 cut(s) | 493, 834 |
| BmiI | GGNNCC | 1 cut(s) | 628 |
| BmsI | GCATC | 2 cut(s) | 433, 874 |
| BpmI | CTGGAG | 1 cut(s) | 624 |
| Bse1I | ACTGG | 1 cut(s) | 613 |
| Bse21I | CCTNAGG | 1 cut(s) | 326 |
| Bse3DI | GCAATG | 1 cut(s) | 208 |
| BseMI | GCAATG | 1 cut(s) | 208 |
| BseMII | CTCAG | 2 cut(s) | 317, 399 |
| BseNI | ACTGG | 1 cut(s) | 613 |
| BseRI | GAGGAG | 4 cut(s) | 498, 677, 782, 791 |
| BseXI | GCAGC | 2 cut(s) | 478, 819 |
| BsiHKAI | GWGCWC | 2 cut(s) | 241, 409 |
| BslFI | GGGAC | 2 cut(s) | 55, 490 |
| BsmAI | GTCTC | 1 cut(s) | 872 |
| BsmFI | GGGAC | 2 cut(s) | 55, 490 |
| Bsp1286I | GDGCHC | 2 cut(s) | 241, 409 |
| Bsp143I | GATC | 6 cut(s) | 321, 436, 670, 678, 703, 711 |
| BspACI | CCGC | 2 cut(s) | 612, 782 |
| BspCNI | CTCAG | 2 cut(s) | 318, 398 |
| BspLI | GGNNCC | 1 cut(s) | 628 |
| BspPI | GGATC | 3 cut(s) | 316, 678, 706 |
| BspTI | CTTAAG | 1 cut(s) | 278 |
| BsrDI | GCAATG | 1 cut(s) | 208 |
| BsrI | ACTGG | 1 cut(s) | 613 |
| BssMI | GATC | 6 cut(s) | 321, 436, 670, 678, 703, 711 |
| Bst4CI | ACNGT | 4 cut(s) | 372, 583, 914, 964 |
| Bst6I | CTCTTC | 3 cut(s) | 654, 759, 913 |
| BstAFI | CTTAAG | 1 cut(s) | 278 |
| BstC8I | GCNNGC | 2 cut(s) | 199, 1005 |
| BstDEI | CTNAG | 3 cut(s) | 326, 385, 822 |
| BstEII | GGTNACC | 1 cut(s) | 784 |
| BstH2I | RGCGCY | 1 cut(s) | 1004 |
| BstHHI | GCGC | 1 cut(s) | 1003 |
| BstKTI | GATC | 6 cut(s) | 324, 439, 673, 681, 706, 714 |
| BstMAI | GTCTC | 1 cut(s) | 872 |
| BstMBI | GATC | 6 cut(s) | 321, 436, 670, 678, 703, 711 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 194, 283, 899 |
| BstNSI | RCATGY | 1 cut(s) | 105 |
| BstPI | GGTNACC | 1 cut(s) | 784 |
| BstSFI | CTRYAG | 1 cut(s) | 579 |
| BstV1I | GCAGC | 2 cut(s) | 478, 819 |
| BstX2I | RGATCY | 1 cut(s) | 321 |
| BstYI | RGATCY | 1 cut(s) | 321 |
| Bsu36I | CCTNAGG | 1 cut(s) | 326 |
| BtsIMutI | CAGTG | 2 cut(s) | 606, 919 |
| Cac8I | GCNNGC | 2 cut(s) | 199, 1005 |
| CaiI | CAGNNNCTG | 2 cut(s) | 587, 853 |
| CfoI | GCGC | 1 cut(s) | 1003 |
| Csp6I | GTAC | 3 cut(s) | 99, 270, 726 |
| CviAII | CATG | 4 cut(s) | 102, 310, 545, 701 |
| CviQI | GTAC | 3 cut(s) | 99, 270, 726 |
| DdeI | CTNAG | 3 cut(s) | 326, 385, 822 |
| DpnI | GATC | 6 cut(s) | 323, 438, 672, 680, 705, 713 |
| DpnII | GATC | 6 cut(s) | 321, 436, 670, 678, 703, 711 |
| DraI | TTTAAA | 2 cut(s) | 880, 973 |
| Eam1104I | CTCTTC | 3 cut(s) | 654, 759, 913 |
| EarI | CTCTTC | 3 cut(s) | 654, 759, 913 |
| Eco47III | AGCGCT | 1 cut(s) | 1002 |
| Eco57I | CTGAAG | 1 cut(s) | 587 |
| Eco81I | CCTNAGG | 1 cut(s) | 326 |
| Eco91I | GGTNACC | 1 cut(s) | 784 |
| EcoO65I | GGTNACC | 1 cut(s) | 784 |
| EcoRI | GAATTC | 1 cut(s) | 943 |
| EcoT22I | ATGCAT | 1 cut(s) | 448 |
| FaeI | CATG | 4 cut(s) | 105, 313, 548, 704 |
| FaqI | GGGAC | 2 cut(s) | 55, 490 |
| FatI | CATG | 4 cut(s) | 101, 309, 544, 700 |
| FauNDI | CATATG | 2 cut(s) | 675, 760 |
| FbaI | TGATCA | 2 cut(s) | 678, 703 |
| Fnu4HI | GCNGC | 2 cut(s) | 492, 833 |
| Fsp4HI | GCNGC | 2 cut(s) | 492, 833 |
| FspBI | CTAG | 3 cut(s) | 495, 813, 1008 |
| GlaI | GCGC | 1 cut(s) | 1002 |
| GluI | GCNGC | 2 cut(s) | 492, 833 |
| GsuI | CTGGAG | 1 cut(s) | 624 |
| HaeII | RGCGCY | 1 cut(s) | 1004 |
| HhaI | GCGC | 1 cut(s) | 1003 |
| Hin1II | CATG | 4 cut(s) | 105, 313, 548, 704 |
| Hin6I | GCGC | 1 cut(s) | 1001 |
| HinP1I | GCGC | 1 cut(s) | 1001 |
| HindIII | AAGCTT | 1 cut(s) | 275 |
| HinfI | GANTC | 4 cut(s) | 5, 17, 348, 532 |
| HphI | GGTGA | 4 cut(s) | 80, 736, 796, 836 |
| Hpy166II | GTNNAC | 1 cut(s) | 844 |
| Hpy188I | TCNGA | 6 cut(s) | 16, 22, 91, 250, 303, 863 |
| Hpy188III | TCNNGA | 5 cut(s) | 325, 440, 536, 641, 869 |
| Hpy8I | GTNNAC | 1 cut(s) | 844 |
| HpyAV | CCTTC | 4 cut(s) | 30, 562, 638, 661 |
| HpyCH4III | ACNGT | 4 cut(s) | 372, 583, 914, 964 |
| HpyCH4V | TGCA | 3 cut(s) | 188, 446, 887 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 194, 283, 899 |
| HpyF3I | CTNAG | 3 cut(s) | 326, 385, 822 |
| Hsp92II | CATG | 4 cut(s) | 105, 313, 548, 704 |
| HspAI | GCGC | 1 cut(s) | 1001 |
| Ksp22I | TGATCA | 2 cut(s) | 678, 703 |
| Kzo9I | GATC | 6 cut(s) | 321, 436, 670, 678, 703, 711 |
| LmnI | GCTCC | 2 cut(s) | 404, 626 |
| Lsp1109I | GCAGC | 2 cut(s) | 478, 819 |
| LweI | GCATC | 2 cut(s) | 433, 874 |
| MaeI | CTAG | 3 cut(s) | 495, 813, 1008 |
| MaeIII | GTNAC | 2 cut(s) | 169, 784 |
| MalI | GATC | 6 cut(s) | 323, 438, 672, 680, 705, 713 |
| MboI | GATC | 6 cut(s) | 321, 436, 670, 678, 703, 711 |
| MboII | GAAGA | 6 cut(s) | 99, 169, 263, 671, 776, 930 |
| MflI | RGATCY | 1 cut(s) | 321 |
| MhlI | GDGCHC | 2 cut(s) | 241, 409 |
| MluCI | AATT | 9 cut(s) | 127, 244, 423, 731, 752, 791, 806, 943, 968 |
| MlyI | GAGTC | 1 cut(s) | 357 |
| MmeI | TCCRAC | 2 cut(s) | 13, 207 |
| Mph1103I | ATGCAT | 1 cut(s) | 448 |
| MspA1I | CMGCKG | 1 cut(s) | 197 |
| MspCI | CTTAAG | 1 cut(s) | 278 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 194, 283, 899 |
| NdeI | CATATG | 2 cut(s) | 675, 760 |
| NdeII | GATC | 6 cut(s) | 321, 436, 670, 678, 703, 711 |
| NlaIII | CATG | 4 cut(s) | 105, 313, 548, 704 |
| NlaIV | GGNNCC | 1 cut(s) | 628 |
| NmuCI | GTSAC | 2 cut(s) | 169, 784 |
| NsiI | ATGCAT | 1 cut(s) | 448 |
| NspI | RCATGY | 1 cut(s) | 105 |
| PciI | ACATGT | 1 cut(s) | 101 |
| PfeI | GAWTC | 3 cut(s) | 5, 17, 532 |
| PkrI | GCNGC | 2 cut(s) | 493, 834 |
| PleI | GAGTC | 1 cut(s) | 356 |
| PpsI | GAGTC | 1 cut(s) | 356 |
| PscI | ACATGT | 1 cut(s) | 101 |
| PspEI | GGTNACC | 1 cut(s) | 784 |
| PspN4I | GGNNCC | 1 cut(s) | 628 |
| PstNI | CAGNNNCTG | 2 cut(s) | 587, 853 |
| PsuI | RGATCY | 1 cut(s) | 321 |
| PvuII | CAGCTG | 1 cut(s) | 197 |
| RsaI | GTAC | 3 cut(s) | 100, 271, 727 |
| RsaNI | GTAC | 3 cut(s) | 99, 270, 726 |
| SatI | GCNGC | 2 cut(s) | 492, 833 |
| Sau3AI | GATC | 6 cut(s) | 321, 436, 670, 678, 703, 711 |
| SchI | GAGTC | 1 cut(s) | 357 |
| SduI | GDGCHC | 2 cut(s) | 241, 409 |
| SetI | ASST | 9 cut(s) | 14, 33, 199, 279, 412, 649, 895, 904, 952 |
| SfaNI | GCATC | 2 cut(s) | 433, 874 |
| SfcI | CTRYAG | 1 cut(s) | 579 |
| SmlI | CTYRAG | 1 cut(s) | 278 |
| SmoI | CTYRAG | 1 cut(s) | 278 |
| Sse9I | AATT | 9 cut(s) | 127, 244, 423, 731, 752, 791, 806, 943, 968 |
| SsiI | CCGC | 2 cut(s) | 612, 782 |
| SspI | AATATT | 1 cut(s) | 516 |
| SspMI | CTAG | 3 cut(s) | 495, 813, 1008 |
| TaaI | ACNGT | 4 cut(s) | 372, 583, 914, 964 |
| TaqI | TCGA | 2 cut(s) | 657, 870 |
| TasI | AATT | 9 cut(s) | 127, 244, 423, 731, 752, 791, 806, 943, 968 |
| TatI | WGTACW | 1 cut(s) | 269 |
| TfiI | GAWTC | 3 cut(s) | 5, 17, 532 |
| TscAI | CASTG | 2 cut(s) | 613, 919 |
| TseFI | GTSAC | 2 cut(s) | 169, 784 |
| TseI | GCWGC | 2 cut(s) | 491, 832 |
| Tsp45I | GTSAC | 2 cut(s) | 169, 784 |
| TspDTI | ATGAA | 6 cut(s) | 326, 413, 607, 777, 784, 1038 |
| TspRI | CASTG | 2 cut(s) | 613, 919 |
| Vha464I | CTTAAG | 1 cut(s) | 278 |
| XapI | RAATTY | 5 cut(s) | 244, 752, 791, 943, 968 |
| XceI | RCATGY | 1 cut(s) | 105 |
| XspI | CTAG | 3 cut(s) | 495, 813, 1008 |
| Zsp2I | ATGCAT | 1 cut(s) | 448 |