Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018860

Physical Location & Seq

Genomic Coordinates Reverse (-)

87169039 .. 87171041

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAAAAATGAAGCGGAAGTCTATATGCAGGAAGAGTTGTCACTTCTGAAATGGCAAGAGAAAGCCACAAAATTGGCTCATGAAGATGCCACTCTAAGAATGGCTGATCTACAGGAGAATATAACTAGCATAGAAGAAAACCTAAAGACTGAAAGGGACATGGATTTCAATCTAGATACGGGAGGAAATGGGCACGTCATCAGTTCTGTAAGGGGTACGACCATTATATCTTGGATAAGGGGTGATACCAAGTATGTTGTAGCTGATGGTCGGACCACCTCTTCAATAAATGACCTTTTCCTAGTGGTGACAGAAAATGATCAGAAGATATACAAAGTGAGTGATACTATTTTGGCAACCACAGCGGGTTCAGTTGACTTGAACAATGAGATGTTAGAGATAGCACGGAAGGCTGCTCAAAATTCTGAGGATGTCAACAAAATGAAGACAAGAATTCAGAAATTTAAAGATCAGTGGATGAAGGACAAGAAAAATAAGAGAAATAAGAGAGTTTTCGGAGCAACTATAGGCCTGCACTCATCAGCATCTATAGTTTTAGTTGGTCATGACAATACAGGTGAAGATCGGGATAGAGCTGTTGTGACATGTGGGTCAGGAGGAGTGCATGCTCGGAGCCATTTTACCAAACTATGTGCACAAAGGACTCCTCAGACACCTGCCGAGAACATTTCCTATTTGATGGACAGCGTGACCGTTGCTGGTCTAAGAGATCCACATACCGGTGGTTTCATCCAGGCAGCCACTTTGTCTCCACAGGGTGTAAATATTGAGGAGAAAAAGCGACACATGATCAGACACCTAGCAGAAAACCATCAGCGGTTTTTAGACGAGTTGAAAACCAAGTTATTGTGTATTAGCAGGGAACTGATCTATTCTGCGGAAAATGAGAGGATGGTGGACACAGCTGTTTTGCGGTTGCATGGTGTTAAGAAAATAGTGTTGCTTGCAGTTCACCAGCGACTGATTGTGAGAATTCTGGAGTTTGTTGATGAAGTGACAGCTAACCGGGTTTTTCAAAGAGACCACTTTCTCCACGTGCGCATCGGTGGTAATGTTCAGAAACTAGAATTAAGAAGGCCAACTGAGACTGAATTTAGATCGCTTGCTCGAAACTTTGTAGATGAAAATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

384

Amino Acids

43.53

Weight (kDa)

8.3

Isoelectric Point (pI)

34.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	71 - 255	3.5e-06	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12090
rosa_chinensis	RchiOBHm_Chr5g0008461
rosa_laevigata	RLG00000031789
rosa_roxburghii	Rroxscaffold_1G00065520
rosa_samantha	Rh5AG085100 Rh5AG085600 Rh7AG361500 Rh7BG353000 Rh7CG380100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	685
AasI	GACNNNNNNGTC	1 cut(s)	610
Acc16I	TGCGCA	1 cut(s)	1061
Acc36I	ACCTGC	1 cut(s)	685
AciI	CCGC	5 cut(s)	14, 365, 838, 899, 934
AclWI	GGATC	1 cut(s)	725
AcsI	RAATTY	5 cut(s)	421, 453, 461, 993, 1112
AcvI	CACGTG	1 cut(s)	1057
AdeI	CACNNNGTG	1 cut(s)	779
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	740
AflIII	ACRYGT	1 cut(s)	605
AgeI	ACCGGT	1 cut(s)	740
AgsI	TTSAA	5 cut(s)	169, 285, 382, 856, 1037
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	753
AluBI	AGCT	4 cut(s)	263, 596, 926, 1022
AluI	AGCT	4 cut(s)	263, 596, 926, 1022
Alw21I	GWGCWC	1 cut(s)	658
Alw26I	GTCTC	3 cut(s)	774, 1035, 1100
Alw44I	GTGCAC	1 cut(s)	654
AlwI	GGATC	1 cut(s)	725
AlwNI	CAGNNNCTG	1 cut(s)	982
AoxI	GGCC	2 cut(s)	529, 1097
ApaLI	GTGCAC	1 cut(s)	654
ApeKI	GCWGC	2 cut(s)	413, 758
ApoI	RAATTY	5 cut(s)	421, 453, 461, 993, 1112
AsiGI	ACCGGT	1 cut(s)	740
AspLEI	GCGC	1 cut(s)	1062
AspS9I	GGNCC	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	1028
AsuHPI	GGTGA	4 cut(s)	254, 319, 590, 965
AvaII	GGWCC	1 cut(s)	273
BaeGI	GKGCMC	2 cut(s)	195, 658
BbrPI	CACGTG	1 cut(s)	1057
BbsI	GAAGAC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	658
BbvI	GCAGC	2 cut(s)	400, 770
BccI	CCATC	4 cut(s)	260, 694, 840, 907
BciT130I	CCWGG	1 cut(s)	755
BclI	TGATCA	2 cut(s)	319, 810
BcnI	CCSGG	1 cut(s)	1028
BcoDI	GTCTC	3 cut(s)	774, 1035, 1100
BfaI	CTAG	6 cut(s)	126, 173, 302, 821, 1085, 1153
BfmI	CTRYAG	3 cut(s)	110, 525, 549
BfuAI	ACCTGC	1 cut(s)	685
BisI	GCNGC	2 cut(s)	414, 759
BlsI	GCNGC	2 cut(s)	415, 760
Bme1390I	CCNGG	2 cut(s)	755, 1028
Bme18I	GGWCC	1 cut(s)	273
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	635
BmrFI	CCNGG	2 cut(s)	755, 1028
BmsI	GCATC	3 cut(s)	76, 554, 1071
BpiI	GAAGAC	1 cut(s)	452
BpmI	CTGGAG	1 cut(s)	1019
BpuMI	CCSGG	1 cut(s)	1028
BsaAI	YACGTR	1 cut(s)	1057
BsaBI	GATNNNNATC	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	1035
BsaWI	WCCGGW	1 cut(s)	740
BsaXI	ACNNNNNCTCC	2 cut(s)	754, 784
Bsc4I	CCNNNNNNNGG	1 cut(s)	740
Bse118I	RCCGGY	1 cut(s)	740
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	755
BseGI	GGATG	4 cut(s)	436, 483, 750, 918
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	740
BseMII	CTCAG	3 cut(s)	417, 683, 1095
BseRI	GAGGAG	3 cut(s)	633, 657, 806
BseSI	GKGCMC	2 cut(s)	195, 658
BseXI	GCAGC	2 cut(s)	400, 770
BsgI	GTGCAG	1 cut(s)	518
BshFI	GGCC	2 cut(s)	531, 1099
BshTI	ACCGGT	1 cut(s)	740
BsiHKAI	GWGCWC	1 cut(s)	658
BsiSI	CCGG	2 cut(s)	741, 1027
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	740
BsmAI	GTCTC	3 cut(s)	774, 1035, 1100
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	531, 1099
Bso31I	GGTCTC	1 cut(s)	1035
Bsp1286I	GDGCHC	2 cut(s)	195, 658
Bsp143I	GATC	8 cut(s)	106, 319, 469, 583, 730, 810, 888, 1118
BspACI	CCGC	5 cut(s)	14, 365, 838, 899, 934
BspANI	GGCC	2 cut(s)	531, 1099
BspCNI	CTCAG	3 cut(s)	418, 682, 1096
BspHI	TCATGA	2 cut(s)	79, 565
BspLI	GGNNCC	1 cut(s)	635
BspMI	ACCTGC	1 cut(s)	685
BspPI	GGATC	1 cut(s)	725
BspTNI	GGTCTC	1 cut(s)	1035
BsrFI	RCCGGY	1 cut(s)	740
BssAI	RCCGGY	1 cut(s)	740
BssMI	GATC	8 cut(s)	106, 319, 469, 583, 730, 810, 888, 1118
Bst2UI	CCWGG	1 cut(s)	755
Bst4CI	ACNGT	1 cut(s)	715
Bst6I	CTCTTC	2 cut(s)	27, 286
BstBAI	YACGTR	1 cut(s)	1057
BstC8I	GCNNGC	4 cut(s)	533, 627, 966, 1125
BstDEI	CTNAG	5 cut(s)	95, 426, 669, 725, 1104
BstF5I	GGATG	4 cut(s)	436, 483, 750, 918
BstHHI	GCGC	1 cut(s)	1062
BstKTI	GATC	8 cut(s)	109, 322, 472, 586, 733, 813, 891, 1121
BstMAI	GTCTC	3 cut(s)	774, 1035, 1100
BstMBI	GATC	8 cut(s)	106, 319, 469, 583, 730, 810, 888, 1118
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 410
BstNI	CCWGG	1 cut(s)	755
BstNSI	RCATGY	2 cut(s)	609, 629
BstSCI	CCNGG	2 cut(s)	753, 1026
BstSFI	CTRYAG	3 cut(s)	110, 525, 549
BstSLI	GKGCMC	2 cut(s)	195, 658
BstV1I	GCAGC	2 cut(s)	400, 770
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	1 cut(s)	730
BstXI	CCANNNNNNTGG	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	730
BsuRI	GGCC	2 cut(s)	531, 1099
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	4 cut(s)	436, 483, 750, 918
BtsIMutI	CAGTG	1 cut(s)	479
BveI	ACCTGC	1 cut(s)	685
Cac8I	GCNNGC	4 cut(s)	533, 627, 966, 1125
CaiI	CAGNNNCTG	1 cut(s)	982
CciI	TCATGA	2 cut(s)	79, 565
CfoI	GCGC	1 cut(s)	1062
Cfr10I	RCCGGY	1 cut(s)	740
Cfr13I	GGNCC	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	216
CspAI	ACCGGT	1 cut(s)	740
CviAII	CATG	7 cut(s)	80, 160, 566, 606, 626, 808, 941
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	5 cut(s)	95, 426, 669, 725, 1104
DpnI	GATC	8 cut(s)	108, 321, 471, 585, 732, 812, 890, 1120
DpnII	GATC	8 cut(s)	106, 319, 469, 583, 730, 810, 888, 1118
DraI	TTTAAA	1 cut(s)	466
DraIII	CACNNNGTG	1 cut(s)	779
DrdI	GACNNNNNNGTC	1 cut(s)	610
DseDI	GACNNNNNNGTC	1 cut(s)	610
Eam1104I	CTCTTC	2 cut(s)	27, 286
EarI	CTCTTC	2 cut(s)	27, 286
Eco147I	AGGCCT	1 cut(s)	531
Eco31I	GGTCTC	1 cut(s)	1035
Eco47I	GGWCC	1 cut(s)	273
Eco72I	CACGTG	1 cut(s)	1057
EcoRI	GAATTC	2 cut(s)	453, 993
EcoRII	CCWGG	1 cut(s)	753
FaeI	CATG	7 cut(s)	83, 163, 569, 609, 629, 811, 944
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	7 cut(s)	79, 159, 565, 605, 625, 807, 940
FauI	CCCGC	1 cut(s)	358
FbaI	TGATCA	2 cut(s)	319, 810
Fnu4HI	GCNGC	2 cut(s)	414, 759
FokI	GGATG	4 cut(s)	443, 490, 737, 925
Fsp4HI	GCNGC	2 cut(s)	414, 759
FspAI	RTGCGCAY	1 cut(s)	1061
FspBI	CTAG	6 cut(s)	126, 173, 302, 821, 1085, 1153
FspI	TGCGCA	1 cut(s)	1061
GlaI	GCGC	1 cut(s)	1061
GluI	GCNGC	2 cut(s)	414, 759
GsuI	CTGGAG	1 cut(s)	1019
HaeIII	GGCC	2 cut(s)	531, 1099
HapII	CCGG	2 cut(s)	741, 1027
HhaI	GCGC	1 cut(s)	1062
Hin1II	CATG	7 cut(s)	83, 163, 569, 609, 629, 811, 944
Hin6I	GCGC	1 cut(s)	1060
HinP1I	GCGC	1 cut(s)	1060
HincII	GTYRAC	2 cut(s)	376, 436
HindII	GTYRAC	2 cut(s)	376, 436
HinfI	GANTC	1 cut(s)	664
HpaII	CCGG	2 cut(s)	741, 1027
HphI	GGTGA	4 cut(s)	254, 319, 590, 965
Hpy166II	GTNNAC	5 cut(s)	376, 436, 656, 919, 973
Hpy188III	TCNNGA	6 cut(s)	80, 173, 566, 587, 615, 998
Hpy8I	GTNNAC	5 cut(s)	376, 436, 656, 919, 973
HpyAV	CCTTC	3 cut(s)	403, 475, 1089
HpyCH4III	ACNGT	1 cut(s)	715
HpyCH4IV	ACGT	2 cut(s)	195, 1056
HpyCH4V	TGCA	6 cut(s)	28, 535, 625, 656, 940, 968
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 410
HpyF3I	CTNAG	5 cut(s)	95, 426, 669, 725, 1104
HpySE526I	ACGT	2 cut(s)	195, 1056
Hsp92II	CATG	7 cut(s)	83, 163, 569, 609, 629, 811, 944
HspAI	GCGC	1 cut(s)	1060
Ksp22I	TGATCA	2 cut(s)	319, 810
Kzo9I	GATC	8 cut(s)	106, 319, 469, 583, 730, 810, 888, 1118
LmnI	GCTCC	2 cut(s)	518, 633
Lsp1109I	GCAGC	2 cut(s)	400, 770
LweI	GCATC	3 cut(s)	76, 554, 1071
MaeI	CTAG	6 cut(s)	126, 173, 302, 821, 1085, 1153
MaeII	ACGT	2 cut(s)	195, 1056
MaeIII	GTNAC	5 cut(s)	39, 307, 601, 709, 1015
MalI	GATC	8 cut(s)	108, 321, 471, 585, 732, 812, 890, 1120
MboI	GATC	8 cut(s)	106, 319, 469, 583, 730, 810, 888, 1118
MboII	GAAGA	7 cut(s)	44, 95, 146, 273, 337, 457, 593
MflI	RGATCY	1 cut(s)	730
MhlI	GDGCHC	2 cut(s)	195, 658
MluCI	AATT	7 cut(s)	71, 421, 453, 461, 993, 1088, 1112
MlyI	GAGTC	1 cut(s)	658
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	7 cut(s)	176, 289, 421, 611, 678, 784, 903
MseI	TTAA	3 cut(s)	465, 948, 1091
MslI	CAYNNNNRTG	2 cut(s)	84, 741
MspA1I	CMGCKG	3 cut(s)	365, 838, 926
MspI	CCGG	2 cut(s)	741, 1027
MspR9I	CCNGG	2 cut(s)	755, 1028
MvaI	CCWGG	1 cut(s)	755
MwoI	GCNNNNNNNGC	2 cut(s)	362, 410
NciI	CCSGG	1 cut(s)	1028
NdeII	GATC	8 cut(s)	106, 319, 469, 583, 730, 810, 888, 1118
NlaIII	CATG	7 cut(s)	83, 163, 569, 609, 629, 811, 944
NlaIV	GGNNCC	1 cut(s)	635
NmeAIII	GCCGAG	1 cut(s)	706
NmuCI	GTSAC	5 cut(s)	39, 307, 601, 709, 1015
NsbI	TGCGCA	1 cut(s)	1061
NspI	RCATGY	2 cut(s)	609, 629
PaeI	GCATGC	1 cut(s)	629
PagI	TCATGA	2 cut(s)	79, 565
PaqCI	CACCTGC	1 cut(s)	685
PceI	AGGCCT	1 cut(s)	531
PciI	ACATGT	1 cut(s)	605
PinAI	ACCGGT	1 cut(s)	740
PkrI	GCNGC	2 cut(s)	415, 760
PleI	GAGTC	1 cut(s)	658
PmaCI	CACGTG	1 cut(s)	1057
PmlI	CACGTG	1 cut(s)	1057
PpsI	GAGTC	1 cut(s)	658
Ppu21I	YACGTR	1 cut(s)	1057
PscI	ACATGT	1 cut(s)	605
Psp6I	CCWGG	1 cut(s)	753
PspCI	CACGTG	1 cut(s)	1057
PspGI	CCWGG	1 cut(s)	753
PspN4I	GGNNCC	1 cut(s)	635
PspPI	GGNCC	1 cut(s)	273
PstNI	CAGNNNCTG	1 cut(s)	982
PsuI	RGATCY	1 cut(s)	730
PvuII	CAGCTG	1 cut(s)	926
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	2 cut(s)	84, 741
SaqAI	TTAA	3 cut(s)	465, 948, 1091
SatI	GCNGC	2 cut(s)	414, 759
Sau3AI	GATC	8 cut(s)	106, 319, 469, 583, 730, 810, 888, 1118
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	1 cut(s)	658
ScrFI	CCNGG	2 cut(s)	755, 1028
SduI	GDGCHC	2 cut(s)	195, 658
SfaNI	GCATC	3 cut(s)	76, 554, 1071
SfcI	CTRYAG	3 cut(s)	110, 525, 549
SinI	GGWCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	2 cut(s)	84, 741
SphI	GCATGC	1 cut(s)	629
Sse9I	AATT	7 cut(s)	71, 421, 453, 461, 993, 1088, 1112
SseBI	AGGCCT	1 cut(s)	531
SsiI	CCGC	5 cut(s)	14, 365, 838, 899, 934
SspI	AATATT	1 cut(s)	787
SspMI	CTAG	6 cut(s)	126, 173, 302, 821, 1085, 1153
StuI	AGGCCT	1 cut(s)	531
StyD4I	CCNGG	2 cut(s)	753, 1026
TaaI	ACNGT	1 cut(s)	715
TaiI	ACGT	2 cut(s)	198, 1059
TaqI	TCGA	1 cut(s)	1129
TasI	AATT	7 cut(s)	71, 421, 453, 461, 993, 1088, 1112
Tru1I	TTAA	3 cut(s)	465, 948, 1091
Tru9I	TTAA	3 cut(s)	465, 948, 1091
TscAI	CASTG	1 cut(s)	479
TseFI	GTSAC	5 cut(s)	39, 307, 601, 709, 1015
TseI	GCWGC	2 cut(s)	413, 758
Tsp45I	GTSAC	5 cut(s)	39, 307, 601, 709, 1015
TspDTI	ATGAA	7 cut(s)	17, 24, 96, 458, 494, 739, 1026
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	1 cut(s)	479
VneI	GTGCAC	1 cut(s)	654
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	5 cut(s)	421, 453, 461, 993, 1112
XbaI	TCTAGA	1 cut(s)	172
XceI	RCATGY	2 cut(s)	609, 629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XspI	CTAG	6 cut(s)	126, 173, 302, 821, 1085, 1153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.