Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0018860

Physical Location & Seq

Genomic Coordinates Forward (+)

8248495 .. 8250569

Gene Structure 2075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031789

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTATAAATCCTTTGTTGATGCTGATAGTCGTCTTGTAATCACCAACAGGGAGGGCTCTGATTCTAATGCTGTACCAAAGGGAAGTGATTTTGTAAGTACGAGAACAGCATATCAGGATAACACCTCCAAATGTTACATCAGTGACAGTGCCAGCAATTTCACTGAAGCTACCAAGAAACTGAAAGGGAAAGGAGTCGATTTACAATCGTTTTTTGATTCTTCAGTACTTACGAGTTTCCTTTTCAGGGACATGGATTTCAATCTAGATACGGGAGGAAATGGGCACGTCATCAGTTCTGTAAGGGGTACGACCATTATATCTTTGATAAGGGGTGATACCAAGTATGTAGTATCTGATGGGCGGACCACCTCTCCAATAAAGGACCTTTTCTTACTGGTGACAGAAAATGATAAGAAGATATACAAAGTAAGTGATAATATTTTGGCAACTACAGCGGGTTCTGTTGGCTTGAACAATGAGATGTTAGCGATAGCACAGAAGGCTGCTCAAAATTCTGAGGATATCAACAAAATGAAGACAAGAATTCAGAAATTTAAAGATCAGTGGATGAAGGACAAGAAAAATAAGAGAAATAAGAGAGTTTTCGGAGCAACTATAGGTCTGCACTCATCAGCATCTATAGTTTTAGTTGGTAATGACAATATAAGTGAAGATCGGGATAGAGCTATTGTGACGTGTGGGTCAGGAGCAGTGCATGCTCGGAGCCATTTTACCAAACTATGTGCACAAAGGACTCCTCAGACACCAGCCGAGAACATTTCCTATTTGATGGACAGTGTGGCCGTTGCTGGTCTAAAAGATCCACATACTGGTGGTTTCATCCAAGCAGCCACTTTGGAACTGATCTATTCTGCGGAAAATGAGAGGATGGTGGACACAGCTGTTTTGCGGTTGCATGGTGTTAAGAAAATAGTGTTGCTTGGAGTTCACCAGCGACTGATTTTGAGAATTCTGGAGTTTGTTGATGAAGCGACAGCTAACCGGCTTTTTCAAAGAGACCACTTTCTCCCCGTGCGCATCGGAGGTAATGTTCAGAAACTAGAATTAAGAAGGCCAACTGAGACTGAATTTAGATCGCTTGCTCGCAACTTTGTAGATGAAGATGTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

379

Amino Acids

41.92

Weight (kDa)

9.15

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	102 - 186	6.8e-06	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018860)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12090
rosa_chinensis	RchiOBHm_Chr5g0008461
rosa_laevigata	RLG00000031789
rosa_roxburghii	Rroxscaffold_1G00065520
rosa_samantha	Rh5AG085100 Rh5AG085600 Rh7AG361500 Rh7BG353000 Rh7CG380100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	703
Acc16I	TGCGCA	1 cut(s)	1040
AccB7I	CCANNNNNTGG	1 cut(s)	833
AciI	CCGC	4 cut(s)	364, 458, 878, 913
AclWI	GGATC	1 cut(s)	818
AcoI	YGGCCR	1 cut(s)	804
AcsI	RAATTY	5 cut(s)	514, 546, 554, 972, 1091
AcuI	CTGAAG	2 cut(s)	186, 207
AfaI	GTAC	4 cut(s)	75, 100, 228, 310
AfiI	CCNNNNNNNGG	2 cut(s)	247, 833
AflIII	ACRYGT	1 cut(s)	698
AgsI	TTSAA	3 cut(s)	262, 475, 1016
AjiI	CACGTC	2 cut(s)	289, 699
AloI	GAACNNNNNNTCC	2 cut(s)	1038, 1070
AluBI	AGCT	4 cut(s)	170, 689, 905, 1001
AluI	AGCT	4 cut(s)	170, 689, 905, 1001
Alw21I	GWGCWC	1 cut(s)	751
Alw26I	GTCTC	2 cut(s)	1014, 1079
Alw44I	GTGCAC	1 cut(s)	747
AlwI	GGATC	1 cut(s)	818
AlwNI	CAGNNNCTG	1 cut(s)	961
AoxI	GGCC	2 cut(s)	804, 1076
ApaLI	GTGCAC	1 cut(s)	747
ApeKI	GCWGC	2 cut(s)	506, 851
ApoI	RAATTY	5 cut(s)	514, 546, 554, 972, 1091
AspLEI	GCGC	1 cut(s)	1041
AspS9I	GGNCC	2 cut(s)	366, 385
AsuHPI	GGTGA	4 cut(s)	34, 347, 412, 944
AvaII	GGWCC	2 cut(s)	366, 385
BaeGI	GKGCMC	2 cut(s)	288, 751
BanII	GRGCYC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	545
Bbv12I	GWGCWC	1 cut(s)	751
BbvI	GCAGC	2 cut(s)	493, 863
BccI	CCATC	3 cut(s)	353, 787, 886
BceAI	ACGGC	1 cut(s)	791
BcoDI	GTCTC	2 cut(s)	1014, 1079
BfaI	CTAG	2 cut(s)	266, 1064
BfmI	CTRYAG	3 cut(s)	453, 618, 642
BisI	GCNGC	2 cut(s)	507, 852
BlsI	GCNGC	2 cut(s)	508, 853
BmcAI	AGTACT	1 cut(s)	228
Bme18I	GGWCC	2 cut(s)	366, 385
BmgBI	CACGTC	2 cut(s)	289, 699
BmgT120I	GGNCC	2 cut(s)	366, 385
BmiI	GGNNCC	1 cut(s)	728
BmsI	GCATC	3 cut(s)	10, 647, 1050
BpiI	GAAGAC	1 cut(s)	545
BpmI	CTGGAG	1 cut(s)	998
BsaBI	GATNNNNATC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	1014
BsaXI	ACNNNNNCTCC	4 cut(s)	358, 388, 1038, 1068
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 833
Bse118I	RCCGGY	1 cut(s)	1005
Bse1I	ACTGG	2 cut(s)	402, 838
Bse8I	GATNNNNATC	1 cut(s)	261
BseGI	GGATG	3 cut(s)	576, 843, 897
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	247, 833
BseMII	CTCAG	3 cut(s)	510, 776, 1074
BseNI	ACTGG	2 cut(s)	402, 838
BseRI	GAGGAG	1 cut(s)	750
BseSI	GKGCMC	2 cut(s)	288, 751
BseXI	GCAGC	2 cut(s)	493, 863
BsgI	GTGCAG	1 cut(s)	611
BshFI	GGCC	2 cut(s)	806, 1078
BsiHKAI	GWGCWC	1 cut(s)	751
BsiSI	CCGG	1 cut(s)	1006
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	2 cut(s)	247, 833
BsmAI	GTCTC	2 cut(s)	1014, 1079
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	2 cut(s)	806, 1078
Bso31I	GGTCTC	1 cut(s)	1014
Bsp1286I	GDGCHC	3 cut(s)	59, 288, 751
Bsp143I	GATC	5 cut(s)	562, 676, 823, 867, 1097
BspACI	CCGC	4 cut(s)	364, 458, 878, 913
BspANI	GGCC	2 cut(s)	806, 1078
BspCNI	CTCAG	3 cut(s)	511, 775, 1075
BspLI	GGNNCC	1 cut(s)	728
BspPI	GGATC	1 cut(s)	818
BspTNI	GGTCTC	1 cut(s)	1014
BsrFI	RCCGGY	1 cut(s)	1005
BsrI	ACTGG	2 cut(s)	402, 838
BssAI	RCCGGY	1 cut(s)	1005
BssMI	GATC	5 cut(s)	562, 676, 823, 867, 1097
Bst4CI	ACNGT	2 cut(s)	149, 800
BstAPI	GCANNNNNTGC	1 cut(s)	719
BstC8I	GCNNGC	4 cut(s)	154, 720, 1104, 1108
BstDEI	CTNAG	3 cut(s)	519, 762, 1083
BstF5I	GGATG	3 cut(s)	576, 843, 897
BstHHI	GCGC	1 cut(s)	1041
BstKTI	GATC	5 cut(s)	565, 679, 826, 870, 1100
BstMAI	GTCTC	2 cut(s)	1014, 1079
BstMBI	GATC	5 cut(s)	562, 676, 823, 867, 1097
BstMWI	GCNNNNNNNGC	3 cut(s)	455, 503, 719
BstNSI	RCATGY	1 cut(s)	722
BstSFI	CTRYAG	3 cut(s)	453, 618, 642
BstSLI	GKGCMC	2 cut(s)	288, 751
BstV1I	GCAGC	2 cut(s)	493, 863
BstV2I	GAAGAC	1 cut(s)	545
BstX2I	RGATCY	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	823
BsuRI	GGCC	2 cut(s)	806, 1078
BtrI	CACGTC	2 cut(s)	289, 699
BtsCI	GGATG	3 cut(s)	576, 843, 897
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	6 cut(s)	148, 154, 162, 572, 720, 805
Cac8I	GCNNGC	4 cut(s)	154, 720, 1104, 1108
CaiI	CAGNNNCTG	1 cut(s)	961
CfoI	GCGC	1 cut(s)	1041
Cfr10I	RCCGGY	1 cut(s)	1005
Cfr13I	GGNCC	2 cut(s)	366, 385
Csp6I	GTAC	4 cut(s)	74, 99, 227, 309
CviAII	CATG	3 cut(s)	253, 719, 920
CviQI	GTAC	4 cut(s)	74, 99, 227, 309
DdeI	CTNAG	3 cut(s)	519, 762, 1083
DpnI	GATC	5 cut(s)	564, 678, 825, 869, 1099
DpnII	GATC	5 cut(s)	562, 676, 823, 867, 1097
DraI	TTTAAA	1 cut(s)	559
DrdI	GACNNNNNNGTC	1 cut(s)	703
DseDI	GACNNNNNNGTC	1 cut(s)	703
EaeI	YGGCCR	1 cut(s)	804
EciI	GGCGGA	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	1014
Eco32I	GATATC	1 cut(s)	526
Eco47I	GGWCC	2 cut(s)	366, 385
Eco57I	CTGAAG	2 cut(s)	186, 207
EcoO109I	RGGNCCY	1 cut(s)	385
EcoRI	GAATTC	2 cut(s)	546, 972
EcoRV	GATATC	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	3 cut(s)	256, 722, 923
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	3 cut(s)	252, 718, 919
FauI	CCCGC	1 cut(s)	451
Fnu4HI	GCNGC	2 cut(s)	507, 852
FokI	GGATG	3 cut(s)	583, 830, 904
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	507, 852
FspAI	RTGCGCAY	1 cut(s)	1040
FspBI	CTAG	2 cut(s)	266, 1064
FspI	TGCGCA	1 cut(s)	1040
GlaI	GCGC	1 cut(s)	1040
GluI	GCNGC	2 cut(s)	507, 852
GsuI	CTGGAG	1 cut(s)	998
HaeIII	GGCC	2 cut(s)	806, 1078
HapII	CCGG	1 cut(s)	1006
HhaI	GCGC	1 cut(s)	1041
Hin1II	CATG	3 cut(s)	256, 722, 923
Hin6I	GCGC	1 cut(s)	1039
HinP1I	GCGC	1 cut(s)	1039
HinfI	GANTC	4 cut(s)	62, 195, 218, 757
HpaII	CCGG	1 cut(s)	1006
HphI	GGTGA	4 cut(s)	34, 347, 412, 944
Hpy166II	GTNNAC	3 cut(s)	749, 898, 952
Hpy188I	TCNGA	9 cut(s)	61, 358, 520, 552, 611, 726, 765, 1046, 1059
Hpy188III	TCNNGA	5 cut(s)	116, 266, 680, 708, 977
Hpy8I	GTNNAC	3 cut(s)	749, 898, 952
HpyAV	CCTTC	3 cut(s)	496, 568, 1068
HpyCH4III	ACNGT	2 cut(s)	149, 800
HpyCH4IV	ACGT	2 cut(s)	288, 698
HpyCH4V	TGCA	4 cut(s)	628, 718, 749, 919
HpyF10VI	GCNNNNNNNGC	3 cut(s)	455, 503, 719
HpyF3I	CTNAG	3 cut(s)	519, 762, 1083
HpySE526I	ACGT	2 cut(s)	288, 698
Hsp92II	CATG	3 cut(s)	256, 722, 923
HspAI	GCGC	1 cut(s)	1039
Kzo9I	GATC	5 cut(s)	562, 676, 823, 867, 1097
LmnI	GCTCC	3 cut(s)	611, 710, 726
Lsp1109I	GCAGC	2 cut(s)	493, 863
LweI	GCATC	3 cut(s)	10, 647, 1050
MaeI	CTAG	2 cut(s)	266, 1064
MaeII	ACGT	2 cut(s)	288, 698
MaeIII	GTNAC	4 cut(s)	134, 143, 400, 694
MalI	GATC	5 cut(s)	564, 678, 825, 869, 1099
MboI	GATC	5 cut(s)	562, 676, 823, 867, 1097
MboII	GAAGA	5 cut(s)	213, 430, 550, 686, 1136
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	3 cut(s)	59, 288, 751
MluCI	AATT	7 cut(s)	157, 514, 546, 554, 972, 1067, 1091
MlyI	GAGTC	2 cut(s)	204, 751
MnlI	CCTC	8 cut(s)	46, 136, 269, 382, 514, 771, 882, 1040
MseI	TTAA	3 cut(s)	558, 927, 1070
MslI	CAYNNNNRTG	1 cut(s)	834
MspA1I	CMGCKG	2 cut(s)	458, 905
MspI	CCGG	1 cut(s)	1006
MwoI	GCNNNNNNNGC	3 cut(s)	455, 503, 719
NdeII	GATC	5 cut(s)	562, 676, 823, 867, 1097
NlaIII	CATG	3 cut(s)	256, 722, 923
NlaIV	GGNNCC	1 cut(s)	728
NmeAIII	GCCGAG	1 cut(s)	799
NmuCI	GTSAC	3 cut(s)	143, 400, 694
NsbI	TGCGCA	1 cut(s)	1040
NspI	RCATGY	1 cut(s)	722
PaeI	GCATGC	1 cut(s)	722
PfeI	GAWTC	2 cut(s)	62, 218
PflMI	CCANNNNNTGG	1 cut(s)	833
PkrI	GCNGC	2 cut(s)	508, 853
PleI	GAGTC	2 cut(s)	203, 751
PpsI	GAGTC	2 cut(s)	203, 751
PpuMI	RGGWCCY	1 cut(s)	385
Psp5II	RGGWCCY	1 cut(s)	385
PspN4I	GGNNCC	1 cut(s)	728
PspPI	GGNCC	2 cut(s)	366, 385
PspPPI	RGGWCCY	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	961
PsuI	RGATCY	1 cut(s)	823
PvuII	CAGCTG	1 cut(s)	905
RsaI	GTAC	4 cut(s)	75, 100, 228, 310
RsaNI	GTAC	4 cut(s)	74, 99, 227, 309
RseI	CAYNNNNRTG	1 cut(s)	834
SaqAI	TTAA	3 cut(s)	558, 927, 1070
SatI	GCNGC	2 cut(s)	507, 852
Sau3AI	GATC	5 cut(s)	562, 676, 823, 867, 1097
Sau96I	GGNCC	2 cut(s)	366, 385
ScaI	AGTACT	1 cut(s)	228
SchI	GAGTC	2 cut(s)	204, 751
SduI	GDGCHC	3 cut(s)	59, 288, 751
SfaNI	GCATC	3 cut(s)	10, 647, 1050
SfcI	CTRYAG	3 cut(s)	453, 618, 642
SinI	GGWCC	2 cut(s)	366, 385
SmiMI	CAYNNNNRTG	1 cut(s)	834
SphI	GCATGC	1 cut(s)	722
Sse9I	AATT	7 cut(s)	157, 514, 546, 554, 972, 1067, 1091
SsiI	CCGC	4 cut(s)	364, 458, 878, 913
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	2 cut(s)	266, 1064
TaaI	ACNGT	2 cut(s)	149, 800
TaiI	ACGT	2 cut(s)	291, 701
TaqI	TCGA	1 cut(s)	198
TasI	AATT	7 cut(s)	157, 514, 546, 554, 972, 1067, 1091
TatI	WGTACW	1 cut(s)	226
TfiI	GAWTC	2 cut(s)	62, 218
Tru1I	TTAA	3 cut(s)	558, 927, 1070
Tru9I	TTAA	3 cut(s)	558, 927, 1070
TscAI	CASTG	6 cut(s)	148, 154, 169, 572, 720, 805
TseFI	GTSAC	3 cut(s)	143, 400, 694
TseI	GCWGC	2 cut(s)	506, 851
Tsp45I	GTSAC	3 cut(s)	143, 400, 694
TspDTI	ATGAA	5 cut(s)	551, 587, 832, 1005, 1137
TspRI	CASTG	6 cut(s)	148, 154, 169, 572, 720, 805
Van91I	CCANNNNNTGG	1 cut(s)	833
VneI	GTGCAC	1 cut(s)	747
VpaK11BI	GGWCC	2 cut(s)	366, 385
XapI	RAATTY	5 cut(s)	514, 546, 554, 972, 1091
XbaI	TCTAGA	1 cut(s)	265
XceI	RCATGY	1 cut(s)	722
XspI	CTAG	2 cut(s)	266, 1064
ZrmI	AGTACT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.