Rh5AG085600

Structural maintenance of chromosomes protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
7524464 .. 7527660
3197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG085600.1

Sequence Viewer

Length: 1389 bp
ATGGATTTCAATGAAGATGGTGACTTCAACAAGATAATTTGTTTTAAAGAGGAGGGCTCTGATTCTAATGCTGTACCAAAGGGAAGTGATTTTGTAAGTACGAGAACAGCATATCAGGATAACACCTCCAAATGTTACATCAGTGACAGTGCAAGTAATTTCACTGAAGCTACCAAGAAACTGAAAGGGAAAGGAGTCGACTTAGACAACAATCGTTTTTTGATTCTTCAGGATATGAAAAATGAAGCGGAAGTCTATATGCAGGAAGAGTTGTCACTTCTGAAATGGCAAGAGAAAGCCACAAAATTGGCTCATGAAGATGCCACTCTAAGAATGGCTGATCTACAGGAGAATATAACTAGCATAGAAGAAAACCTAAAGACTGAAAGGGACATGGATTTCAATCTAGATACGGGAGGAAATGGGCACGTCATCAGTTCTGTAAGGGGTACGGCCATTATATCTTTGATAAGGGGTGATACCAAGTATGTTGTAGCTGATGGTCGGACCACCTCTTCAATAAATGACCTTTTCCTAGTGGTGACAGAAAATGATCAGAAGATATACAAAGTGAGTGATACTATTTTGGCAACCACAGCGGGTTCAGTTGACTTGAACAATGATATGTTAGAGATAGCACGGAAGGCTGCTCAAAATTCTGAGGATGTCAACAAAATGAAGACAAGAATTCAGAAATTTAAAGATCAGTGGATGAAGGACAAGAAAAATAAGAGAAATAAGAGAGTTTTCGGAGCAACTATAGGCCTGCACTCATCAGCATCTATAGTTTTAGTTGGTCATGACAATATAGCTGAAGATCGGGATAGAGCTGTTGTGACATGTGGGTCAGGAGGAGTGCATGCTCGGAGCCATTTTACCAAACTATGTGCACAAAGGACTCCTCAGACACCTGCCGAGAACATTTCCTATTTGATGGACAGCGTGACCGTTGCTGGTCTAACAGATCCACATACCGGTGGTTTCATCCAGGCAGCCACTTTGTCTCCACAGGGTGTAAATATTGAGGAGAAAAAGCGACACATGATCAAACACCTAGCAGAAAACCATCAGCGGTTTTTAGACGAGTTGAAAACCAAGTTATTGTGTATTAGCAGGGAACTGATCTATTCTGCAGAAAATGAGAGGATGGTGGACACAGCTGTTTTGCGGTTGCATGGTGTTAAGAAAATAGTGTTGCTTGCAGTTCACCAGCGACTGATTGTGAGAATTCTGGAGTTTGTTGATGAAGTGACAGCTAACCGGGTTTTTCAAAGAGACCACTTTCTCCACGTGCGCATCGGTGGTAATGTTCAGAAACTAGAATTAAGAAGGCCAACTGAGACTGAATTTAGATCGCTTGCTCGAAACTTTGTAGATGAAAATGTCTAG

Protein Analysis

462

Amino Acids

52.03

Weight (kDa)

6.56

Isoelectric Point (pI)

32.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0018860)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g12090
rosa_chinensis RchiOBHm_Chr5g0008461
rosa_laevigata RLG00000031789
rosa_roxburghii Rroxscaffold_1G00065520
rosa_samantha Rh5AG085100 Rh5AG085600 Rh7AG361500 Rh7BG353000 Rh7CG380100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 919
AasI GACNNNNNNGTC 1 cut(s) 844
Acc16I TGCGCA 1 cut(s) 1295
Acc36I ACCTGC 1 cut(s) 919
AccI GTMKAC 1 cut(s) 198
AciI CCGC 4 cut(s) 248, 599, 1072, 1168
AclWI GGATC 1 cut(s) 959
AcoI YGGCCR 1 cut(s) 453
AcsI RAATTY 5 cut(s) 655, 687, 695, 1227, 1346
AcuI CTGAAG 3 cut(s) 186, 212, 834
AcvI CACGTG 1 cut(s) 1291
AdeI CACNNNGTG 1 cut(s) 1013
AfaI GTAC 3 cut(s) 75, 100, 451
AfiI CCNNNNNNNGG 1 cut(s) 974
AflIII ACRYGT 1 cut(s) 839
AgeI ACCGGT 1 cut(s) 974
AgsI TTSAA 7 cut(s) 10, 28, 403, 519, 616, 1090, 1271
AjiI CACGTC 1 cut(s) 430
AjnI CCWGG 1 cut(s) 987
AluBI AGCT 6 cut(s) 170, 497, 812, 830, 1160, 1256
AluI AGCT 6 cut(s) 170, 497, 812, 830, 1160, 1256
Alw21I GWGCWC 1 cut(s) 892
Alw26I GTCTC 3 cut(s) 1008, 1269, 1334
Alw44I GTGCAC 1 cut(s) 888
AlwI GGATC 1 cut(s) 959
AlwNI CAGNNNCTG 1 cut(s) 1216
AoxI GGCC 3 cut(s) 453, 763, 1331
ApaLI GTGCAC 1 cut(s) 888
ApeKI GCWGC 2 cut(s) 647, 992
ApoI RAATTY 5 cut(s) 655, 687, 695, 1227, 1346
AsiGI ACCGGT 1 cut(s) 974
AspLEI GCGC 1 cut(s) 1296
AspS9I GGNCC 1 cut(s) 507
AsuC2I CCSGG 1 cut(s) 1262
AsuHPI GGTGA 4 cut(s) 32, 488, 553, 1199
AvaII GGWCC 1 cut(s) 507
BaeGI GKGCMC 2 cut(s) 429, 892
BanII GRGCYC 1 cut(s) 59
BbrPI CACGTG 1 cut(s) 1291
BbsI GAAGAC 1 cut(s) 686
Bbv12I GWGCWC 1 cut(s) 892
BbvI GCAGC 2 cut(s) 634, 1004
BccI CCATC 5 cut(s) 11, 494, 928, 1074, 1141
BceAI ACGGC 1 cut(s) 468
BciT130I CCWGG 1 cut(s) 989
BclI TGATCA 2 cut(s) 553, 1044
BcnI CCSGG 1 cut(s) 1262
BcoDI GTCTC 3 cut(s) 1008, 1269, 1334
BfaI CTAG 6 cut(s) 360, 407, 536, 1055, 1319, 1387
BfmI CTRYAG 4 cut(s) 344, 759, 783, 1131
BfuAI ACCTGC 1 cut(s) 919
BisI GCNGC 2 cut(s) 648, 993
BlsI GCNGC 2 cut(s) 649, 994
Bme1390I CCNGG 2 cut(s) 989, 1262
Bme18I GGWCC 1 cut(s) 507
BmgBI CACGTC 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 507
BmiI GGNNCC 1 cut(s) 869
BmrFI CCNGG 2 cut(s) 989, 1262
BmsI GCATC 3 cut(s) 310, 788, 1305
BpiI GAAGAC 1 cut(s) 686
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BpmI CTGGAG 1 cut(s) 1253
BpuMI CCSGG 1 cut(s) 1262
BsaAI YACGTR 1 cut(s) 1291
BsaBI GATNNNNATC 1 cut(s) 402
BsaI GGTCTC 1 cut(s) 1269
BsaWI WCCGGW 1 cut(s) 974
BsaXI ACNNNNNCTCC 2 cut(s) 988, 1018
Bsc4I CCNNNNNNNGG 1 cut(s) 974
Bse118I RCCGGY 1 cut(s) 974
Bse8I GATNNNNATC 1 cut(s) 402
BseBI CCWGG 1 cut(s) 989
BseGI GGATG 4 cut(s) 670, 717, 984, 1152
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 1 cut(s) 974
BseMII CTCAG 3 cut(s) 651, 917, 1329
BseRI GAGGAG 4 cut(s) 65, 867, 891, 1040
BseSI GKGCMC 2 cut(s) 429, 892
BseXI GCAGC 2 cut(s) 634, 1004
BsgI GTGCAG 1 cut(s) 752
BshFI GGCC 3 cut(s) 455, 765, 1333
BshTI ACCGGT 1 cut(s) 974
BsiHKAI GWGCWC 1 cut(s) 892
BsiSI CCGG 2 cut(s) 975, 1261
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 1 cut(s) 974
BsmAI GTCTC 3 cut(s) 1008, 1269, 1334
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 3 cut(s) 455, 765, 1333
Bso31I GGTCTC 1 cut(s) 1269
Bsp1286I GDGCHC 3 cut(s) 59, 429, 892
Bsp143I GATC 8 cut(s) 340, 553, 703, 817, 964, 1044, 1122, 1352
BspACI CCGC 4 cut(s) 248, 599, 1072, 1168
BspANI GGCC 3 cut(s) 455, 765, 1333
BspCNI CTCAG 3 cut(s) 652, 916, 1330
BspHI TCATGA 2 cut(s) 313, 799
BspLI GGNNCC 1 cut(s) 869
BspMAI CTGCAG 1 cut(s) 1135
BspMI ACCTGC 1 cut(s) 919
BspPI GGATC 1 cut(s) 959
BspTNI GGTCTC 1 cut(s) 1269
BsrFI RCCGGY 1 cut(s) 974
BssAI RCCGGY 1 cut(s) 974
BssMI GATC 8 cut(s) 340, 553, 703, 817, 964, 1044, 1122, 1352
Bst2UI CCWGG 1 cut(s) 989
Bst4CI ACNGT 2 cut(s) 149, 949
Bst6I CTCTTC 2 cut(s) 261, 520
BstBAI YACGTR 1 cut(s) 1291
BstC8I GCNNGC 4 cut(s) 767, 861, 1200, 1359
BstDEI CTNAG 5 cut(s) 202, 329, 660, 903, 1338
BstF5I GGATG 4 cut(s) 670, 717, 984, 1152
BstHHI GCGC 1 cut(s) 1296
BstKTI GATC 8 cut(s) 343, 556, 706, 820, 967, 1047, 1125, 1355
BstMAI GTCTC 3 cut(s) 1008, 1269, 1334
BstMBI GATC 8 cut(s) 340, 553, 703, 817, 964, 1044, 1122, 1352
BstMWI GCNNNNNNNGC 2 cut(s) 596, 644
BstNI CCWGG 1 cut(s) 989
BstNSI RCATGY 2 cut(s) 843, 863
BstSCI CCNGG 2 cut(s) 987, 1260
BstSFI CTRYAG 4 cut(s) 344, 759, 783, 1131
BstSLI GKGCMC 2 cut(s) 429, 892
BstV1I GCAGC 2 cut(s) 634, 1004
BstV2I GAAGAC 1 cut(s) 686
BstX2I RGATCY 1 cut(s) 964
BstXI CCANNNNNNTGG 1 cut(s) 307
BstYI RGATCY 1 cut(s) 964
BsuRI GGCC 3 cut(s) 455, 765, 1333
BtrI CACGTC 1 cut(s) 430
BtsCI GGATG 4 cut(s) 670, 717, 984, 1152
BtsIMutI CAGTG 4 cut(s) 148, 154, 162, 713
BveI ACCTGC 1 cut(s) 919
Cac8I GCNNGC 4 cut(s) 767, 861, 1200, 1359
CaiI CAGNNNCTG 1 cut(s) 1216
CciI TCATGA 2 cut(s) 313, 799
CfoI GCGC 1 cut(s) 1296
Cfr10I RCCGGY 1 cut(s) 974
Cfr13I GGNCC 1 cut(s) 507
Csp6I GTAC 3 cut(s) 74, 99, 450
CspAI ACCGGT 1 cut(s) 974
CviAII CATG 7 cut(s) 314, 394, 800, 840, 860, 1042, 1175
CviQI GTAC 3 cut(s) 74, 99, 450
DdeI CTNAG 5 cut(s) 202, 329, 660, 903, 1338
DpnI GATC 8 cut(s) 342, 555, 705, 819, 966, 1046, 1124, 1354
DpnII GATC 8 cut(s) 340, 553, 703, 817, 964, 1044, 1122, 1352
DraI TTTAAA 2 cut(s) 46, 700
DraIII CACNNNGTG 1 cut(s) 1013
DrdI GACNNNNNNGTC 1 cut(s) 844
DseDI GACNNNNNNGTC 1 cut(s) 844
EaeI YGGCCR 1 cut(s) 453
Eam1104I CTCTTC 2 cut(s) 261, 520
EarI CTCTTC 2 cut(s) 261, 520
Eco147I AGGCCT 1 cut(s) 765
Eco24I GRGCYC 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 1269
Eco47I GGWCC 1 cut(s) 507
Eco57I CTGAAG 3 cut(s) 186, 212, 834
Eco72I CACGTG 1 cut(s) 1291
EcoRI GAATTC 2 cut(s) 687, 1227
EcoRII CCWGG 1 cut(s) 987
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 7 cut(s) 317, 397, 803, 843, 863, 1045, 1178
FaqI GGGAC 1 cut(s) 404
FatI CATG 7 cut(s) 313, 393, 799, 839, 859, 1041, 1174
FauI CCCGC 1 cut(s) 592
FbaI TGATCA 2 cut(s) 553, 1044
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 648, 993
FokI GGATG 4 cut(s) 677, 724, 971, 1159
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 648, 993
FspAI RTGCGCAY 1 cut(s) 1295
FspBI CTAG 6 cut(s) 360, 407, 536, 1055, 1319, 1387
FspI TGCGCA 1 cut(s) 1295
GlaI GCGC 1 cut(s) 1295
GluI GCNGC 2 cut(s) 648, 993
GsuI CTGGAG 1 cut(s) 1253
HaeIII GGCC 3 cut(s) 455, 765, 1333
HapII CCGG 2 cut(s) 975, 1261
HhaI GCGC 1 cut(s) 1296
Hin1II CATG 7 cut(s) 317, 397, 803, 843, 863, 1045, 1178
Hin6I GCGC 1 cut(s) 1294
HinP1I GCGC 1 cut(s) 1294
HincII GTYRAC 3 cut(s) 199, 610, 670
HindII GTYRAC 3 cut(s) 199, 610, 670
HinfI GANTC 4 cut(s) 62, 195, 223, 898
HpaII CCGG 2 cut(s) 975, 1261
HphI GGTGA 4 cut(s) 32, 488, 553, 1199
Hpy166II GTNNAC 6 cut(s) 199, 610, 670, 890, 1153, 1207
Hpy188III TCNNGA 8 cut(s) 116, 230, 314, 407, 800, 821, 849, 1232
Hpy8I GTNNAC 6 cut(s) 199, 610, 670, 890, 1153, 1207
HpyAV CCTTC 3 cut(s) 637, 709, 1323
HpyCH4III ACNGT 2 cut(s) 149, 949
HpyCH4IV ACGT 2 cut(s) 429, 1290
HpyCH4V TGCA 8 cut(s) 152, 262, 769, 859, 890, 1133, 1174, 1202
HpyF10VI GCNNNNNNNGC 2 cut(s) 596, 644
HpyF3I CTNAG 5 cut(s) 202, 329, 660, 903, 1338
HpySE526I ACGT 2 cut(s) 429, 1290
Hsp92II CATG 7 cut(s) 317, 397, 803, 843, 863, 1045, 1178
HspAI GCGC 1 cut(s) 1294
Ksp22I TGATCA 2 cut(s) 553, 1044
Kzo9I GATC 8 cut(s) 340, 553, 703, 817, 964, 1044, 1122, 1352
LmnI GCTCC 2 cut(s) 752, 867
Lsp1109I GCAGC 2 cut(s) 634, 1004
LweI GCATC 3 cut(s) 310, 788, 1305
MaeI CTAG 6 cut(s) 360, 407, 536, 1055, 1319, 1387
MaeII ACGT 2 cut(s) 429, 1290
MaeIII GTNAC 8 cut(s) 20, 134, 143, 273, 541, 835, 943, 1249
MalI GATC 8 cut(s) 342, 555, 705, 819, 966, 1046, 1124, 1354
MboI GATC 8 cut(s) 340, 553, 703, 817, 964, 1044, 1122, 1352
MboII GAAGA 9 cut(s) 26, 218, 278, 329, 380, 507, 571, 691, 827
MflI RGATCY 1 cut(s) 964
MhlI GDGCHC 3 cut(s) 59, 429, 892
MluCI AATT 9 cut(s) 36, 157, 305, 655, 687, 695, 1227, 1322, 1346
MlyI GAGTC 2 cut(s) 204, 892
MmeI TCCRAC 1 cut(s) 485
MseI TTAA 4 cut(s) 45, 699, 1182, 1325
MslI CAYNNNNRTG 2 cut(s) 318, 975
MspA1I CMGCKG 3 cut(s) 599, 1072, 1160
MspI CCGG 2 cut(s) 975, 1261
MspR9I CCNGG 2 cut(s) 989, 1262
MvaI CCWGG 1 cut(s) 989
MwoI GCNNNNNNNGC 2 cut(s) 596, 644
NciI CCSGG 1 cut(s) 1262
NdeII GATC 8 cut(s) 340, 553, 703, 817, 964, 1044, 1122, 1352
NlaIII CATG 7 cut(s) 317, 397, 803, 843, 863, 1045, 1178
NlaIV GGNNCC 1 cut(s) 869
NmeAIII GCCGAG 1 cut(s) 940
NmuCI GTSAC 7 cut(s) 20, 143, 273, 541, 835, 943, 1249
NsbI TGCGCA 1 cut(s) 1295
NspI RCATGY 2 cut(s) 843, 863
PaeI GCATGC 1 cut(s) 863
PagI TCATGA 2 cut(s) 313, 799
PaqCI CACCTGC 1 cut(s) 919
PceI AGGCCT 1 cut(s) 765
PciI ACATGT 1 cut(s) 839
PfeI GAWTC 2 cut(s) 62, 223
PinAI ACCGGT 1 cut(s) 974
PkrI GCNGC 2 cut(s) 649, 994
PleI GAGTC 2 cut(s) 203, 892
PmaCI CACGTG 1 cut(s) 1291
PmlI CACGTG 1 cut(s) 1291
PpsI GAGTC 2 cut(s) 203, 892
Ppu21I YACGTR 1 cut(s) 1291
PscI ACATGT 1 cut(s) 839
Psp6I CCWGG 1 cut(s) 987
PspCI CACGTG 1 cut(s) 1291
PspGI CCWGG 1 cut(s) 987
PspN4I GGNNCC 1 cut(s) 869
PspPI GGNCC 1 cut(s) 507
PstI CTGCAG 1 cut(s) 1135
PstNI CAGNNNCTG 1 cut(s) 1216
PsuI RGATCY 1 cut(s) 964
PvuII CAGCTG 1 cut(s) 1160
RsaI GTAC 3 cut(s) 75, 100, 451
RsaNI GTAC 3 cut(s) 74, 99, 450
RseI CAYNNNNRTG 2 cut(s) 318, 975
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 4 cut(s) 45, 699, 1182, 1325
SatI GCNGC 2 cut(s) 648, 993
Sau3AI GATC 8 cut(s) 340, 553, 703, 817, 964, 1044, 1122, 1352
Sau96I GGNCC 1 cut(s) 507
SchI GAGTC 2 cut(s) 204, 892
ScrFI CCNGG 2 cut(s) 989, 1262
SduI GDGCHC 3 cut(s) 59, 429, 892
SfaNI GCATC 3 cut(s) 310, 788, 1305
SfcI CTRYAG 4 cut(s) 344, 759, 783, 1131
SinI GGWCC 1 cut(s) 507
SmiMI CAYNNNNRTG 2 cut(s) 318, 975
SphI GCATGC 1 cut(s) 863
Sse9I AATT 9 cut(s) 36, 157, 305, 655, 687, 695, 1227, 1322, 1346
SseBI AGGCCT 1 cut(s) 765
SsiI CCGC 4 cut(s) 248, 599, 1072, 1168
SspI AATATT 1 cut(s) 1021
SspMI CTAG 6 cut(s) 360, 407, 536, 1055, 1319, 1387
StuI AGGCCT 1 cut(s) 765
StyD4I CCNGG 2 cut(s) 987, 1260
TaaI ACNGT 2 cut(s) 149, 949
TaiI ACGT 2 cut(s) 432, 1293
TaqI TCGA 2 cut(s) 198, 1363
TasI AATT 9 cut(s) 36, 157, 305, 655, 687, 695, 1227, 1322, 1346
TfiI GAWTC 2 cut(s) 62, 223
Tru1I TTAA 4 cut(s) 45, 699, 1182, 1325
Tru9I TTAA 4 cut(s) 45, 699, 1182, 1325
TscAI CASTG 4 cut(s) 148, 154, 169, 713
TseFI GTSAC 7 cut(s) 20, 143, 273, 541, 835, 943, 1249
TseI GCWGC 2 cut(s) 647, 992
Tsp45I GTSAC 7 cut(s) 20, 143, 273, 541, 835, 943, 1249
TspDTI ATGAA 8 cut(s) 27, 251, 258, 330, 692, 728, 973, 1260
TspGWI ACGGA 1 cut(s) 655
TspRI CASTG 4 cut(s) 148, 154, 169, 713
VneI GTGCAC 1 cut(s) 888
VpaK11BI GGWCC 1 cut(s) 507
XapI RAATTY 5 cut(s) 655, 687, 695, 1227, 1346
XbaI TCTAGA 1 cut(s) 406
XceI RCATGY 2 cut(s) 843, 863
XcmI CCANNNNNNNNNTGG 1 cut(s) 331
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 6 cut(s) 360, 407, 536, 1055, 1319, 1387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.