FvH4_6g12270

pfkB family carbohydrate kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
7404117 .. 7406052
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12270.t1

Sequence Viewer

Length: 1458 bp
ATGGCGTCATTTCAACTCTCCCGCCCACTGGTCCTAAACCCCAGAAGCTTAATCCCTAAACCCTACGAAACACTAAACCCCCAATTCTTCAAGCTTCAACTTTTCAAACCTCAGAAGCTTAACCCACTCAGAGCTTCCGGCGAAGACAATGGAAGCATTGAAGAACCCAAGCAGCCAGCTCGCCGTGGCCGGAAAAAGAGTTCAACTTCCGCTTCATCTTCACCACCGAAAAAAACCCAGCGCGCCAAAAAAGCCCAAGTCGAAAACGGCCCAGTAGAACCCGAATCTGACGATTCGGAGCTGGAAGATTACGACGACGGCATAGACTTCCCCTACGACGACCCGCCGTTGGTCTGCTGCTTCGGGGCGGCCCAGAAAGAGTTCGTCCCGACGGTTCGGGTCTCCGACAACCCGATGCACCCGGATATGTACTCCCGGTGGAAGATGCTCCAGTGGGACCCTCCGGAATTCTCGCGCGCTCCGGGTTCTTCGCCGTCCAACGTGGCGATATCGCACGTGCGGCTCGGCGGGAGAGCGGCGTTTATGGGGAAAGTCGGAGGGGATGAGTTTGGGAGTGAAGTGTTGTTGATGATGAACAAGGAGAATGTTCAGACACGTGGCGTGAAGGTGGATGCGGATGCGAAGACGGCGAGGACTTACATGAAGATTAGATTTGACGATGAGAGAATGTGGACGGAGACGGTGAAAGAGTCCGCTGAGGATTCGTTGCTCCGGTCAGAGCTCAACCTCGCCGTGCTTAAAGAGGCTAGAATGTTCCATTTTACTTCAGAGGTTTTGACATCAGCGCCAATGCAACCAGCCCTTTACAGGGCTATAGCTTATGCGAAGAAGTTTGGGGGCCTTGTGTTTTTCGACTTGAATTTGCCGTTGCCATTGTGGAAGTCGCGTGACGAGACTAGGGAGTTCATTAAGAAGGCGTGGTATGAGGCGGATGTAATTGAGGTTTCGAGGCAAGAGTTGGAGTTTCTTTTGGATGAGGAGTATTACGTGAGGAAGAGGAATTATAGGCCGCAGTATTATGCTCAGGAGTATGAGCAGACCAAGAAGCGGAGAGATTATTACCATTACACTCCGGAAGAGATAGCTCCATTGTGGCATGATAAACTTAAGTTTTTGTTCGTGACAGATGGGACGCTTCGAATTCATTACTATTCCCCTTCGTTTGATGGTGTTGTGATTGGAACAGAAGATGTGCTCATTACTCCATTCACTTGCGACAGGACTGGTTCTGGTGATGCTGTTGTAGCAGCAATTATGAGAAAGTTGACCACTTTCCCCGAGATGTATGAAAATCAAGATGTTTGTGAAAGGCAGCTTCGTTTTGCAGTTGCAGCAGGAATTATATCACAGTGGACAATTGGTGCTGTTAGAGGGTTTCCAACTGAAAGTGCAACTCAAAATCTCAAAGAGCAGGTTTATGTACCTTCAATGTGGTAG

Protein Analysis

486

Amino Acids

55.62

Weight (kDa)

6.04

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 149 - 456 1.3e-27 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016665)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54090
fragaria_vesca FvH4_6g12270
malus_domestica MD12G1158400.v1.1
prunus_persica Prupe.6G268800_v2.0.a1
pyrus_communis pycom12g15040
rosa_chinensis RchiOBHm_Chr3g0464071
rosa_laevigata RLG00000024724
rosa_multiflora Rmu_sc0006492.1_g000020
rosa_roxburghii Rroxscaffold_6G00416020
rosa_rugosa Rorug03G0070600
rosa_samantha Rh3BG131700 Rh3CG134000 Rh3DG133000
rosa_wichuraiana Rw3G010770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1423
AccBSI CCGCTC 1 cut(s) 536
AccII CGCG 4 cut(s) 243, 475, 477, 907
AccIII TCCGGA 2 cut(s) 463, 1093
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 3 cut(s) 467, 880, 1161
AcuI CTGAAG 1 cut(s) 771
AcvI CACGTG 2 cut(s) 517, 617
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 431, 1443
AfiI CCNNNNNNNGG 5 cut(s) 28, 349, 828, 829, 1068
AflII CTTAAG 1 cut(s) 1127
AflIII ACRYGT 1 cut(s) 614
AgsI TTSAA 8 cut(s) 14, 91, 98, 106, 161, 204, 880, 1449
AloI GAACNNNNNNTCC 2 cut(s) 184, 216
Alw21I GWGCWC 2 cut(s) 744, 1218
Alw26I GTCTC 3 cut(s) 406, 692, 908
Ama87I CYCGRG 1 cut(s) 1298
Aor13HI TCCGGA 2 cut(s) 463, 1093
AoxI GGCC 5 cut(s) 187, 268, 369, 859, 1028
ApeKI GCWGC 5 cut(s) 172, 357, 1268, 1333, 1352
ApoI RAATTY 3 cut(s) 467, 880, 1161
Asp700I GAANNNNTTC 1 cut(s) 380
AspLEI GCGC 5 cut(s) 243, 245, 477, 479, 808
AspS9I GGNCC 5 cut(s) 31, 269, 370, 457, 859
AsuC2I CCSGG 3 cut(s) 422, 436, 483
AsuHPI GGTGA 3 cut(s) 213, 715, 1265
AsuII TTCGAA 1 cut(s) 1159
AvaI CYCGRG 1 cut(s) 1298
AvaII GGWCC 2 cut(s) 31, 457
BanII GRGCYC 1 cut(s) 744
BbrPI CACGTG 2 cut(s) 517, 617
BbsI GAAGAC 2 cut(s) 150, 650
Bbv12I GWGCWC 2 cut(s) 744, 1218
BbvCI CCTCAGC 1 cut(s) 717
BbvI GCAGC 5 cut(s) 184, 344, 1280, 1345, 1364
BccI CCATC 2 cut(s) 1142, 1181
BceAI ACGGC 8 cut(s) 168, 283, 331, 334, 478, 663, 737, 871
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BcnI CCSGG 3 cut(s) 422, 436, 483
BcoDI GTCTC 3 cut(s) 406, 692, 908
BfaI CTAG 2 cut(s) 768, 918
BfmI CTRYAG 1 cut(s) 834
BfoI RGCGCY 1 cut(s) 809
BfrI CTTAAG 1 cut(s) 1127
BfuAI ACCTGC 1 cut(s) 1423
BisI GCNGC 9 cut(s) 173, 358, 369, 521, 537, 1031, 1269, 1334, 1353
BlsI GCNGC 9 cut(s) 174, 359, 370, 522, 538, 1032, 1270, 1335, 1354
Bme1390I CCNGG 3 cut(s) 422, 436, 483
Bme18I GGWCC 2 cut(s) 31, 457
BmeT110I CYCGRG 1 cut(s) 1298
BmgT120I GGNCC 5 cut(s) 31, 269, 370, 457, 859
BmiI GGNNCC 3 cut(s) 458, 459, 860
BmrFI CCNGG 3 cut(s) 422, 436, 483
BmrI ACTGGG 1 cut(s) 266
BmsI GCATC 5 cut(s) 405, 435, 622, 628, 1246
BmuI ACTGGG 1 cut(s) 266
BpiI GAAGAC 2 cut(s) 150, 650
BpmI CTGGAG 1 cut(s) 434
Bpu10I CCTNAGC 2 cut(s) 717, 1044
Bpu14I TTCGAA 1 cut(s) 1159
BpuMI CCSGG 3 cut(s) 422, 436, 483
BsaAI YACGTR 3 cut(s) 517, 617, 1009
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 406
BsaJI CCNNGG 1 cut(s) 184
BsaWI WCCGGW 3 cut(s) 463, 732, 1093
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 349, 828, 829, 1068
Bse1I ACTGG 4 cut(s) 33, 272, 451, 1249
BseAI TCCGGA 2 cut(s) 463, 1093
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 5 cut(s) 568, 637, 643, 958, 1000
BseLI CCNNNNNNNGG 5 cut(s) 28, 349, 828, 829, 1068
BseMII CTCAG 4 cut(s) 125, 142, 708, 1058
BseNI ACTGG 4 cut(s) 33, 272, 451, 1249
BsePI GCGCGC 2 cut(s) 241, 475
BseRI GAGGAG 1 cut(s) 1013
BseXI GCAGC 5 cut(s) 184, 344, 1280, 1345, 1364
BseYI CCCAGC 1 cut(s) 237
Bsh1236I CGCG 4 cut(s) 243, 475, 477, 907
BshFI GGCC 5 cut(s) 189, 270, 371, 861, 1030
BsiHKAI GWGCWC 2 cut(s) 744, 1218
BsiHKCI CYCGRG 1 cut(s) 1298
BsiSI CCGG 8 cut(s) 138, 190, 422, 436, 464, 482, 733, 1094
BslFI GGGAC 3 cut(s) 371, 470, 1165
BslI CCNNNNNNNGG 5 cut(s) 28, 349, 828, 829, 1068
BsmAI GTCTC 3 cut(s) 406, 692, 908
BsmBI CGTCTC 1 cut(s) 692
BsmFI GGGAC 3 cut(s) 371, 470, 1165
BsnI GGCC 5 cut(s) 189, 270, 371, 861, 1030
Bso31I GGTCTC 1 cut(s) 406
BsoBI CYCGRG 1 cut(s) 1298
Bsp119I TTCGAA 1 cut(s) 1159
Bsp1286I GDGCHC 2 cut(s) 744, 1218
Bsp13I TCCGGA 2 cut(s) 463, 1093
BspANI GGCC 5 cut(s) 189, 270, 371, 861, 1030
BspCNI CTCAG 4 cut(s) 124, 141, 709, 1057
BspEI TCCGGA 2 cut(s) 463, 1093
BspFNI CGCG 4 cut(s) 243, 475, 477, 907
BspLI GGNNCC 3 cut(s) 458, 459, 860
BspMI ACCTGC 1 cut(s) 1423
BspT104I TTCGAA 1 cut(s) 1159
BspTI CTTAAG 1 cut(s) 1127
BspTNI GGTCTC 1 cut(s) 406
BsrBI CCGCTC 1 cut(s) 536
BsrI ACTGG 4 cut(s) 33, 272, 451, 1249
BssECI CCNNGG 1 cut(s) 184
BssHII GCGCGC 2 cut(s) 241, 475
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 3 cut(s) 394, 703, 1371
Bst6I CTCTTC 2 cut(s) 1010, 1092
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 1127
BstBAI YACGTR 3 cut(s) 517, 617, 1009
BstBI TTCGAA 1 cut(s) 1159
BstC8I GCNNGC 4 cut(s) 177, 181, 243, 477
BstDEI CTNAG 4 cut(s) 111, 128, 717, 1044
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 5 cut(s) 568, 637, 643, 958, 1000
BstFNI CGCG 4 cut(s) 243, 475, 477, 907
BstH2I RGCGCY 1 cut(s) 809
BstHHI GCGC 5 cut(s) 243, 245, 477, 479, 808
BstMAI GTCTC 3 cut(s) 406, 692, 908
BstMWI GCNNNNNNNGC 5 cut(s) 251, 520, 647, 1265, 1352
BstSCI CCNGG 3 cut(s) 420, 434, 481
BstSFI CTRYAG 1 cut(s) 834
BstUI CGCG 4 cut(s) 243, 475, 477, 907
BstV1I GCAGC 5 cut(s) 184, 344, 1280, 1345, 1364
BstV2I GAAGAC 2 cut(s) 150, 650
BsuRI GGCC 5 cut(s) 189, 270, 371, 861, 1030
BtgI CCRYGG 1 cut(s) 184
BtsCI GGATG 5 cut(s) 568, 637, 643, 958, 1000
BtsIMutI CAGTG 3 cut(s) 26, 458, 1376
BveI ACCTGC 1 cut(s) 1423
Cac8I GCNNGC 4 cut(s) 177, 181, 243, 477
CfoI GCGC 5 cut(s) 243, 245, 477, 479, 808
Cfr13I GGNCC 5 cut(s) 31, 269, 370, 457, 859
CseI GACGC 1 cut(s) 1162
Csp6I GTAC 2 cut(s) 430, 1442
CviAII CATG 2 cut(s) 661, 1118
CviQI GTAC 2 cut(s) 430, 1442
DdeI CTNAG 4 cut(s) 111, 128, 717, 1044
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 2 cut(s) 1010, 1092
EarI CTCTTC 2 cut(s) 1010, 1092
EciI GGCGGA 1 cut(s) 965
Ecl136II GAGCTC 1 cut(s) 742
Eco24I GRGCYC 1 cut(s) 744
Eco31I GGTCTC 1 cut(s) 406
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 2 cut(s) 31, 457
Eco53kI GAGCTC 1 cut(s) 742
Eco57I CTGAAG 1 cut(s) 771
Eco72I CACGTG 2 cut(s) 517, 617
Eco88I CYCGRG 1 cut(s) 1298
EcoICRI GAGCTC 1 cut(s) 742
EcoO109I RGGNCCY 2 cut(s) 457, 859
EcoRI GAATTC 2 cut(s) 467, 1161
EcoRV GATATC 1 cut(s) 510
EcoT38I GRGCYC 1 cut(s) 744
Esp3I CGTCTC 1 cut(s) 692
FaeI CATG 2 cut(s) 664, 1121
FaqI GGGAC 3 cut(s) 371, 470, 1165
FatI CATG 2 cut(s) 660, 1117
FauI CCCGC 3 cut(s) 29, 351, 521
Fnu4HI GCNGC 9 cut(s) 173, 358, 369, 521, 537, 1031, 1269, 1334, 1353
FokI GGATG 5 cut(s) 575, 644, 650, 965, 1007
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 9 cut(s) 173, 358, 369, 521, 537, 1031, 1269, 1334, 1353
FspBI CTAG 2 cut(s) 768, 918
GlaI GCGC 5 cut(s) 242, 244, 476, 478, 807
GluI GCNGC 9 cut(s) 173, 358, 369, 521, 537, 1031, 1269, 1334, 1353
GsaI CCCAGC 1 cut(s) 241
GsuI CTGGAG 1 cut(s) 434
HaeII RGCGCY 1 cut(s) 809
HaeIII GGCC 5 cut(s) 189, 270, 371, 861, 1030
HapII CCGG 8 cut(s) 138, 190, 422, 436, 464, 482, 733, 1094
HgaI GACGC 1 cut(s) 1162
HhaI GCGC 5 cut(s) 243, 245, 477, 479, 808
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 664, 1121
Hin6I GCGC 5 cut(s) 241, 243, 475, 477, 806
HinP1I GCGC 5 cut(s) 241, 243, 475, 477, 806
HincII GTYRAC 1 cut(s) 1287
HindII GTYRAC 1 cut(s) 1287
HindIII AAGCTT 3 cut(s) 46, 92, 116
HinfI GANTC 4 cut(s) 284, 293, 710, 722
HpaII CCGG 8 cut(s) 138, 190, 422, 436, 464, 482, 733, 1094
HphI GGTGA 3 cut(s) 213, 715, 1265
Hpy166II GTNNAC 3 cut(s) 693, 1287, 1374
Hpy188I TCNGA 9 cut(s) 114, 131, 289, 298, 406, 557, 612, 739, 790
Hpy188III TCNNGA 6 cut(s) 388, 464, 1046, 1094, 1141, 1316
Hpy8I GTNNAC 3 cut(s) 693, 1287, 1374
Hpy99I CGWCG 4 cut(s) 317, 320, 341, 394
HpyAV CCTTC 4 cut(s) 619, 928, 1188, 1455
HpyCH4III ACNGT 3 cut(s) 394, 703, 1371
HpyCH4IV ACGT 4 cut(s) 501, 516, 616, 1008
HpyCH4V TGCA 5 cut(s) 418, 814, 1346, 1352, 1412
HpyF10VI GCNNNNNNNGC 5 cut(s) 251, 520, 647, 1265, 1352
HpyF3I CTNAG 4 cut(s) 111, 128, 717, 1044
HpySE526I ACGT 4 cut(s) 501, 516, 616, 1008
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 664, 1121
HspAI GCGC 5 cut(s) 241, 243, 475, 477, 806
KflI GGGWCCC 1 cut(s) 457
Kpn2I TCCGGA 2 cut(s) 463, 1093
LmnI GCTCC 5 cut(s) 298, 453, 484, 735, 1111
Lsp1109I GCAGC 5 cut(s) 184, 344, 1280, 1345, 1364
LweI GCATC 5 cut(s) 405, 435, 622, 628, 1246
MaeI CTAG 2 cut(s) 768, 918
MaeII ACGT 4 cut(s) 501, 516, 616, 1008
MaeIII GTNAC 2 cut(s) 908, 1141
MbiI CCGCTC 1 cut(s) 536
MfeI CAATTG 1 cut(s) 1377
MhlI GDGCHC 2 cut(s) 744, 1218
MluCI AATT 9 cut(s) 83, 467, 880, 957, 1021, 1161, 1272, 1359, 1377
MlyI GAGTC 1 cut(s) 719
MmeI TCCRAC 5 cut(s) 429, 522, 535, 960, 1424
MroI TCCGGA 2 cut(s) 463, 1093
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 5 cut(s) 50, 120, 759, 930, 1128
MspA1I CMGCKG 1 cut(s) 716
MspCI CTTAAG 1 cut(s) 1127
MspI CCGG 8 cut(s) 138, 190, 422, 436, 464, 482, 733, 1094
MspR9I CCNGG 3 cut(s) 422, 436, 483
MunI CAATTG 1 cut(s) 1377
MvnI CGCG 4 cut(s) 243, 475, 477, 907
MwoI GCNNNNNNNGC 5 cut(s) 251, 520, 647, 1265, 1352
NciI CCSGG 3 cut(s) 422, 436, 483
NlaIII CATG 2 cut(s) 664, 1121
NlaIV GGNNCC 3 cut(s) 458, 459, 860
NmeAIII GCCGAG 1 cut(s) 504
NmuCI GTSAC 2 cut(s) 908, 1141
NspV TTCGAA 1 cut(s) 1159
PauI GCGCGC 2 cut(s) 241, 475
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 3 cut(s) 284, 293, 722
PkrI GCNGC 9 cut(s) 174, 359, 370, 522, 538, 1032, 1270, 1335, 1354
PleI GAGTC 1 cut(s) 718
PmaCI CACGTG 2 cut(s) 517, 617
PmlI CACGTG 2 cut(s) 517, 617
PpsI GAGTC 1 cut(s) 718
Ppu21I YACGTR 3 cut(s) 517, 617, 1009
PpuMI RGGWCCY 1 cut(s) 457
Psp124BI GAGCTC 1 cut(s) 744
Psp5II RGGWCCY 1 cut(s) 457
PspCI CACGTG 2 cut(s) 517, 617
PspFI CCCAGC 1 cut(s) 237
PspN4I GGNNCC 3 cut(s) 458, 459, 860
PspPI GGNCC 5 cut(s) 31, 269, 370, 457, 859
PspPPI RGGWCCY 1 cut(s) 457
PteI GCGCGC 2 cut(s) 241, 475
RsaI GTAC 2 cut(s) 431, 1443
RsaNI GTAC 2 cut(s) 430, 1442
SacI GAGCTC 1 cut(s) 744
SaqAI TTAA 5 cut(s) 50, 120, 759, 930, 1128
SatI GCNGC 9 cut(s) 173, 358, 369, 521, 537, 1031, 1269, 1334, 1353
Sau96I GGNCC 5 cut(s) 31, 269, 370, 457, 859
SchI GAGTC 1 cut(s) 719
ScrFI CCNGG 3 cut(s) 422, 436, 483
SduI GDGCHC 2 cut(s) 744, 1218
SfaNI GCATC 5 cut(s) 405, 435, 622, 628, 1246
SfcI CTRYAG 1 cut(s) 834
SfuI TTCGAA 1 cut(s) 1159
SinI GGWCC 2 cut(s) 31, 457
SmlI CTYRAG 1 cut(s) 1127
SmoI CTYRAG 1 cut(s) 1127
Sse9I AATT 9 cut(s) 83, 467, 880, 957, 1021, 1161, 1272, 1359, 1377
SspMI CTAG 2 cut(s) 768, 918
SstI GAGCTC 1 cut(s) 744
StyD4I CCNGG 3 cut(s) 420, 434, 481
TaaI ACNGT 3 cut(s) 394, 703, 1371
TaiI ACGT 4 cut(s) 504, 519, 619, 1011
TaqI TCGA 4 cut(s) 261, 873, 968, 1159
TasI AATT 9 cut(s) 83, 467, 880, 957, 1021, 1161, 1272, 1359, 1377
TatI WGTACW 1 cut(s) 429
TauI GCSGC 4 cut(s) 371, 523, 539, 1033
TfiI GAWTC 3 cut(s) 284, 293, 722
Tru1I TTAA 5 cut(s) 50, 120, 759, 930, 1128
Tru9I TTAA 5 cut(s) 50, 120, 759, 930, 1128
TscAI CASTG 3 cut(s) 33, 458, 1376
TseFI GTSAC 2 cut(s) 908, 1141
TseI GCWGC 5 cut(s) 172, 357, 1268, 1333, 1352
Tsp45I GTSAC 2 cut(s) 908, 1141
TspDTI ATGAA 6 cut(s) 204, 608, 677, 916, 1154, 1323
TspGWI ACGGA 1 cut(s) 710
TspRI CASTG 3 cut(s) 33, 458, 1376
Vha464I CTTAAG 1 cut(s) 1127
VpaK11BI GGWCC 2 cut(s) 31, 457
XapI RAATTY 3 cut(s) 467, 880, 1161
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 2 cut(s) 768, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.