Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0016665

Physical Location & Seq

Genomic Coordinates Reverse (-)

5595026 .. 5597175

Gene Structure 2150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0070600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGCTTGGAGCATTTGCCTCAAGACTGCTTCGAGCAGATTTTATCATTGACATCTCCCGGAGATGCATGTCGTTCCTCGTTAGTCTCCTCGTCGATTCGTGCCATGGCCGATAAGGATAGCTTGTGGGGGATGTTTTTGCCGTCGGACTATTCAGCAATTCTGTCCAGATTAGTCACTCCAATACCTTATTCATCCAACAAGGACTTGTTCATCAGGTTGTGCCGTCCAAATCTAATCGATTGTGGTAAAAAGATGTTCTCAATAGAGAAATCAACAGGTAAAAAATGTTACATGTTAAGTGCAAGGGATCTTTCAATTACATGGGCGTGCAATCCTCTCTATTGGAGTTGGAAGCCTTCCTCCGAATCAAGATTTGCAGAGGTTGCTGAACTCAGAACCATCTGGTGGCTAGAAATATGTGGCACCATGAATAGTCAATTGCTATCACCAAAAACAGTTTATGGTGCTCATCTTGTTATCAAGTTGGCCAATCGTGCATATGGTTTGGACTCGTTACCTTCTGAGATTTCACTTGAAGTTGGCAATTACAAATCACAAGGCACTGTATACTTGAGTGCAAATCGGAAGGCAACAGAAGTAGACGAGCGTGTGAGACCAATCAGGGTTCTGGAAGAACGTCTTCGTGAGCGAACAGATGGATGGATGGAGATTGAACTGGGCAGCTTTTACAATGATGGATGTTATTATAACAAGGATGTGAAGATGAGCCTAAAAGAAGTTAAGGGTGCACACCTAAAAGGTGGCCTTATTGTTGAGGGAATTGAAATTAGGCCAAAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB SOUL

Protein Analysis

268

Amino Acids

30.35

Weight (kDa)

8.34

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	3 - 43	8.2e-07	F-box-like
F-box	PF00646	3 - 43	3.7e-06	F-box domain
PP2	PF14299	95 - 266	2.5e-54	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54090
fragaria_vesca	FvH4_6g12270
malus_domestica	MD12G1158400.v1.1
prunus_persica	Prupe.6G268800_v2.0.a1
pyrus_communis	pycom12g15040
rosa_chinensis	RchiOBHm_Chr3g0464071
rosa_laevigata	RLG00000024724
rosa_multiflora	Rmu_sc0006492.1_g000020
rosa_roxburghii	Rroxscaffold_6G00416020
rosa_rugosa	Rorug03G0070600
rosa_samantha	Rh3BG131700 Rh3CG134000 Rh3DG133000
rosa_wichuraiana	Rw3G010770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	711
AccB1I	GGYRCC	1 cut(s)	425
AccB7I	CCANNNNNTGG	1 cut(s)	408
AccI	GTMKAC	2 cut(s)	570, 603
AclWI	GGATC	1 cut(s)	318
AcoI	YGGCCR	2 cut(s)	108, 489
AfiI	CCNNNNNNNGG	1 cut(s)	408
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	4 cut(s)	318, 539, 677, 788
AjuI	GAANNNNNNNTTGG	2 cut(s)	175, 207
AluBI	AGCT	3 cut(s)	6, 123, 687
AluI	AGCT	3 cut(s)	6, 123, 687
Alw21I	GWGCWC	2 cut(s)	472, 754
Alw26I	GTCTC	2 cut(s)	91, 610
Alw44I	GTGCAC	1 cut(s)	750
AlwI	GGATC	1 cut(s)	318
AoxI	GGCC	4 cut(s)	108, 489, 766, 794
ApaLI	GTGCAC	1 cut(s)	750
ApeKI	GCWGC	1 cut(s)	684
Asp700I	GAANNNNTTC	1 cut(s)	642
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	441
BaeGI	GKGCMC	1 cut(s)	754
BalI	TGGCCA	1 cut(s)	491
BanI	GGYRCC	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	635
Bbv12I	GWGCWC	2 cut(s)	472, 754
BbvI	GCAGC	1 cut(s)	696
BccI	CCATC	5 cut(s)	410, 653, 657, 661, 692
BceAI	ACGGC	2 cut(s)	127, 210
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	2 cut(s)	91, 610
BfaI	CTAG	1 cut(s)	413
BisI	GCNGC	1 cut(s)	685
BlsI	GCNGC	1 cut(s)	686
Bme1390I	CCNGG	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	1 cut(s)	60
BmrI	ACTGGG	1 cut(s)	689
BmsI	GCATC	1 cut(s)	55
BmuI	ACTGGG	1 cut(s)	689
BpiI	GAAGAC	1 cut(s)	635
BpuEI	CTTGAG	2 cut(s)	6, 595
BpuMI	CCSGG	1 cut(s)	60
Bsa29I	ATCGAT	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	610
BsaJI	CCNNGG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse1I	ACTGG	1 cut(s)	684
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	6 cut(s)	138, 194, 668, 672, 707, 724
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMII	CTCAG	2 cut(s)	409, 516
BseNI	ACTGG	1 cut(s)	684
BseRI	GAGGAG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	754
BseXI	GCAGC	1 cut(s)	696
BshFI	GGCC	4 cut(s)	110, 491, 768, 796
BshNI	GGYRCC	1 cut(s)	425
BshVI	ATCGAT	1 cut(s)	240
BsiHKAI	GWGCWC	2 cut(s)	472, 754
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	2 cut(s)	91, 610
BsnI	GGCC	4 cut(s)	110, 491, 768, 796
Bso31I	GGTCTC	1 cut(s)	610
Bsp1286I	GDGCHC	2 cut(s)	472, 754
Bsp143I	GATC	1 cut(s)	310
Bsp19I	CCATGG	1 cut(s)	105
BspANI	GGCC	4 cut(s)	110, 491, 768, 796
BspCNI	CTCAG	2 cut(s)	408, 517
BspDI	ATCGAT	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	427
BspPI	GGATC	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	684
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	1 cut(s)	310
BssNAI	GTATAC	1 cut(s)	571
BssT1I	CCWWGG	1 cut(s)	105
Bst1107I	GTATAC	1 cut(s)	571
Bst4CI	ACNGT	2 cut(s)	460, 568
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	2 cut(s)	395, 525
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	6 cut(s)	138, 194, 668, 672, 707, 724
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	2 cut(s)	91, 610
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 497
BstNSI	RCATGY	2 cut(s)	72, 298
BstSCI	CCNGG	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	754
BstV1I	GCAGC	1 cut(s)	696
BstV2I	GAAGAC	1 cut(s)	635
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BstZ17I	GTATAC	1 cut(s)	571
Bsu15I	ATCGAT	1 cut(s)	240
BsuRI	GGCC	4 cut(s)	110, 491, 768, 796
BsuTUI	ATCGAT	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	6 cut(s)	138, 194, 668, 672, 707, 724
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	1 cut(s)	331
ClaI	ATCGAT	1 cut(s)	240
CviAII	CATG	5 cut(s)	69, 106, 295, 324, 430
DdeI	CTNAG	2 cut(s)	395, 525
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
EaeI	YGGCCR	2 cut(s)	108, 489
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	610
EcoT14I	CCWWGG	1 cut(s)	105
EcoT22I	ATGCAT	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	5 cut(s)	72, 109, 298, 327, 433
FalI	AAGNNNNNCTT	6 cut(s)	107, 139, 627, 659, 753, 785
FatI	CATG	5 cut(s)	68, 105, 294, 323, 429
FauNDI	CATATG	1 cut(s)	502
FblI	GTMKAC	2 cut(s)	570, 603
Fnu4HI	GCNGC	1 cut(s)	685
FokI	GGATG	6 cut(s)	145, 181, 675, 679, 714, 731
Fsp4HI	GCNGC	1 cut(s)	685
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	1 cut(s)	685
HaeIII	GGCC	4 cut(s)	110, 491, 768, 796
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	5 cut(s)	72, 109, 298, 327, 433
HinfI	GANTC	3 cut(s)	97, 368, 512
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	441
Hpy166II	GTNNAC	3 cut(s)	571, 604, 752
Hpy188I	TCNGA	5 cut(s)	148, 367, 398, 526, 588
Hpy188III	TCNNGA	5 cut(s)	23, 168, 372, 632, 647
Hpy8I	GTNNAC	3 cut(s)	571, 604, 752
Hpy99I	CGWCG	2 cut(s)	97, 148
HpyAV	CCTTC	3 cut(s)	369, 531, 583
HpyCH4III	ACNGT	2 cut(s)	460, 568
HpyCH4IV	ACGT	1 cut(s)	640
HpyCH4V	TGCA	7 cut(s)	68, 305, 333, 380, 500, 581, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 497
HpyF3I	CTNAG	2 cut(s)	395, 525
HpySE526I	ACGT	1 cut(s)	640
Hsp92II	CATG	5 cut(s)	72, 109, 298, 327, 433
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	8 cut(s)	73, 181, 202, 264, 391, 610, 617, 665
Lsp1109I	GCAGC	1 cut(s)	696
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	1 cut(s)	640
MaeIII	GTNAC	3 cut(s)	175, 290, 516
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	3 cut(s)	635, 647, 736
MfeI	CAATTG	1 cut(s)	440
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	2 cut(s)	472, 754
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	7 cut(s)	159, 318, 440, 547, 783, 789, 802
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	3 cut(s)	126, 222, 332
MnlI	CCTC	7 cut(s)	30, 88, 100, 348, 373, 376, 772
Mox20I	TGGCCA	1 cut(s)	491
Mph1103I	ATGCAT	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	642
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	2 cut(s)	299, 744
MslI	CAYNNNNRTG	1 cut(s)	328
Msp20I	TGGCCA	1 cut(s)	491
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	60
MunI	CAATTG	1 cut(s)	440
MwoI	GCNNNNNNNGC	2 cut(s)	386, 497
NciI	CCSGG	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	105
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	5 cut(s)	72, 109, 298, 327, 433
NlaIV	GGNNCC	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	70
NspI	RCATGY	2 cut(s)	72, 298
PciI	ACATGT	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	2 cut(s)	97, 368
PflMI	CCANNNNNTGG	1 cut(s)	408
PfoI	TCCNGGA	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	686
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
PscI	ACATGT	1 cut(s)	294
PsiI	TTATAA	1 cut(s)	711
PspN4I	GGNNCC	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	328
SaqAI	TTAA	2 cut(s)	299, 744
SatI	GCNGC	1 cut(s)	685
Sau3AI	GATC	1 cut(s)	310
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	2 cut(s)	472, 754
SfaNI	GCATC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	328
SmlI	CTYRAG	2 cut(s)	21, 574
SmoI	CTYRAG	2 cut(s)	21, 574
Sse9I	AATT	7 cut(s)	159, 318, 440, 547, 783, 789, 802
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	460, 568
TaiI	ACGT	1 cut(s)	643
TaqI	TCGA	3 cut(s)	33, 95, 240
TasI	AATT	7 cut(s)	159, 318, 440, 547, 783, 789, 802
TfiI	GAWTC	2 cut(s)	97, 368
Tru1I	TTAA	2 cut(s)	299, 744
Tru9I	TTAA	2 cut(s)	299, 744
TscAI	CASTG	1 cut(s)	571
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	684
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	3 cut(s)	183, 202, 446
TspRI	CASTG	1 cut(s)	571
Van91I	CCANNNNNTGG	1 cut(s)	408
VneI	GTGCAC	1 cut(s)	750
XceI	RCATGY	2 cut(s)	72, 298
XmiI	GTMKAC	2 cut(s)	570, 603
XmnI	GAANNNNTTC	1 cut(s)	642
XspI	CTAG	1 cut(s)	413
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.