Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0016665

Physical Location & Seq

Genomic Coordinates Forward (+)

38107548 .. 38108722

Gene Structure 1175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00416020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGCACCCGGACATGTACAACCAGTGGAAGATGCTCCAATGGGACCCGCCGGAGTTCTCGCGTGCCCCGGGCTCGTCGCCGTCCAACGTGGCGATCTCGCACGTGAGGCTCGGAGGGAGAGCGGCGTTCATGGGCAAAGTCGGCGGCGATGAGTTTGGGAGCGAAGTGCTGCTGATGATGAACAAGGAGAAGGTTCAGACACGTGGCGTGAAGATTGATTCGAATGCGAGGACGGCGTGTACTTACATGAAGATTAAGTTTGATGATGAGAAAATGTGGACGGAGACGGTGAAAGAGTCGGCGGAGGATTCGTTGCTCCGGTCAGAGCTCAACCTCGCCGTGCTTAAAGAGGCTAGAATGTTCCACTTCAGTTCAGAAGTTTTGACATCTGCGCCAATGCAACCAACCCTTTTCAGGGCTATAGCTTATGCGAAGAAGTTTGGAGGGCTTGTGTTTTTCGATCCGAATTTGCCATTGCCATTGTGGAAGTCGCGTGACGAGACTAGGGAATTCATCAAGAGGGCGTGGAATGAGGCGGATGTAATTGAGGTTTCGAGGCAAGAGTTGGAGTTTCTTTTGGATGAAGACTATTACGTGTGGAAGAGGACCTACAGGCCGCAATACTATGCTGAGAACTTTGAGCAGACCAAGAAGCGGAGAGATTATTACCATTACACTCCGGAAGAAATAGCTCCATTGTGGCATGATAAACTTAAGTTTTTGTTTGTGACAGATGGGACGCTTAGAATCCATTACTATTCCCCTTCGTTTCATGGTGTTGTGATTGGAACAGAAGATGTGCTGATTACCCCATTCACTTGCGACAGGACTGGTTCTGGTGATGCTGTTGTAGCAGCGATTATGAGAAAGTTGACCACTTTCCCCGAGATGTATGAAAATCAAGATGTTTGTGAAAGGCAGCTTCGTTTTGCAGTTGCAGCAGGAATTATATCACAGTGGACGGTTGGTGCTGTTAGAGGTTTTCCGACTGAAAGTGCAACTCAAAATCTCAAGGAGCAGGTTTATGTACCCTCAATGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB SOUL

Protein Analysis

347

Amino Acids

40.16

Weight (kDa)

6.05

Isoelectric Point (pI)

56.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	15 - 323	1.5e-27	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54090
fragaria_vesca	FvH4_6g12270
malus_domestica	MD12G1158400.v1.1
prunus_persica	Prupe.6G268800_v2.0.a1
pyrus_communis	pycom12g15040
rosa_chinensis	RchiOBHm_Chr3g0464071
rosa_laevigata	RLG00000024724
rosa_multiflora	Rmu_sc0006492.1_g000020
rosa_roxburghii	Rroxscaffold_6G00416020
rosa_rugosa	Rorug03G0070600
rosa_samantha	Rh3BG131700 Rh3CG134000 Rh3DG133000
rosa_wichuraiana	Rw3G010770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1009
AccBSI	CCGCTC	1 cut(s)	122
AccII	CGCG	2 cut(s)	61, 493
AccIII	TCCGGA	1 cut(s)	679
AciI	CCGC	7 cut(s)	47, 122, 144, 302, 536, 617, 655
AclWI	GGATC	1 cut(s)	455
AcsI	RAATTY	2 cut(s)	466, 509
AcuI	CTGAAG	1 cut(s)	352
AcvI	CACGTG	2 cut(s)	103, 203
AfaI	GTAC	3 cut(s)	17, 241, 1029
AfiI	CCNNNNNNNGG	4 cut(s)	414, 415, 654, 1038
AflII	CTTAAG	1 cut(s)	713
AflIII	ACRYGT	3 cut(s)	12, 200, 594
AluBI	AGCT	4 cut(s)	328, 425, 692, 922
AluI	AGCT	4 cut(s)	328, 425, 692, 922
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	2 cut(s)	278, 494
AlwI	GGATC	1 cut(s)	455
Ama87I	CYCGRG	2 cut(s)	67, 884
Aor13HI	TCCGGA	1 cut(s)	679
AoxI	GGCC	1 cut(s)	614
ApeKI	GCWGC	4 cut(s)	169, 854, 919, 938
ApoI	RAATTY	2 cut(s)	466, 509
AspLEI	GCGC	1 cut(s)	394
AspS9I	GGNCC	2 cut(s)	43, 606
AsuC2I	CCSGG	3 cut(s)	8, 68, 69
AsuHPI	GGTGA	2 cut(s)	301, 851
AsuII	TTCGAA	1 cut(s)	221
AvaI	CYCGRG	2 cut(s)	67, 884
AvaII	GGWCC	2 cut(s)	43, 606
BaeGI	GKGCMC	1 cut(s)	67
BanII	GRGCYC	2 cut(s)	74, 330
BarI	GAAGNNNNNNTAC	2 cut(s)	593, 625
BbrPI	CACGTG	2 cut(s)	103, 203
BbsI	GAAGAC	1 cut(s)	591
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	4 cut(s)	156, 866, 931, 950
BccI	CCATC	1 cut(s)	728
BceAI	ACGGC	3 cut(s)	64, 249, 323
BcnI	CCSGG	3 cut(s)	8, 68, 69
BcoDI	GTCTC	2 cut(s)	278, 494
BfaI	CTAG	2 cut(s)	354, 504
BfmI	CTRYAG	2 cut(s)	420, 610
BfrI	CTTAAG	1 cut(s)	713
BfuAI	ACCTGC	1 cut(s)	1009
BisI	GCNGC	7 cut(s)	123, 145, 170, 617, 855, 920, 939
BlsI	GCNGC	7 cut(s)	124, 146, 171, 618, 856, 921, 940
Bme1390I	CCNGG	3 cut(s)	8, 68, 69
Bme18I	GGWCC	2 cut(s)	43, 606
BmeT110I	CYCGRG	2 cut(s)	67, 884
BmgT120I	GGNCC	2 cut(s)	43, 606
BmiI	GGNNCC	2 cut(s)	44, 45
BmrFI	CCNGG	3 cut(s)	8, 68, 69
BmsI	GCATC	2 cut(s)	21, 832
BpiI	GAAGAC	1 cut(s)	591
Bpu14I	TTCGAA	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	995
BpuMI	CCSGG	3 cut(s)	8, 68, 69
BsaAI	YACGTR	3 cut(s)	103, 203, 595
BsaJI	CCNNGG	2 cut(s)	66, 67
BsaWI	WCCGGW	2 cut(s)	318, 679
BsaXI	ACNNNNNCTCC	4 cut(s)	296, 326, 435, 465
Bsc4I	CCNNNNNNNGG	4 cut(s)	414, 415, 654, 1038
Bse1I	ACTGG	2 cut(s)	22, 835
Bse3DI	GCAATG	1 cut(s)	473
BseAI	TCCGGA	1 cut(s)	679
BseDI	CCNNGG	2 cut(s)	66, 67
BseGI	GGATG	2 cut(s)	544, 586
BseLI	CCNNNNNNNGG	4 cut(s)	414, 415, 654, 1038
BseMI	GCAATG	1 cut(s)	473
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	2 cut(s)	22, 835
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	4 cut(s)	156, 866, 931, 950
Bsh1236I	CGCG	2 cut(s)	61, 493
BshFI	GGCC	1 cut(s)	616
BsiHKAI	GWGCWC	1 cut(s)	330
BsiHKCI	CYCGRG	2 cut(s)	67, 884
BsiSI	CCGG	5 cut(s)	8, 50, 68, 319, 680
BslFI	GGGAC	2 cut(s)	56, 751
BslI	CCNNNNNNNGG	4 cut(s)	414, 415, 654, 1038
BsmAI	GTCTC	2 cut(s)	278, 494
BsmBI	CGTCTC	1 cut(s)	278
BsmFI	GGGAC	2 cut(s)	56, 751
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	616
BsoBI	CYCGRG	2 cut(s)	67, 884
Bsp119I	TTCGAA	1 cut(s)	221
Bsp1286I	GDGCHC	3 cut(s)	67, 74, 330
Bsp13I	TCCGGA	1 cut(s)	679
Bsp1407I	TGTACA	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	93, 460
BspACI	CCGC	7 cut(s)	47, 122, 144, 302, 536, 617, 655
BspANI	GGCC	1 cut(s)	616
BspCNI	CTCAG	1 cut(s)	622
BspEI	TCCGGA	1 cut(s)	679
BspFNI	CGCG	2 cut(s)	61, 493
BspLI	GGNNCC	2 cut(s)	44, 45
BspMI	ACCTGC	1 cut(s)	1009
BspPI	GGATC	1 cut(s)	455
BspT104I	TTCGAA	1 cut(s)	221
BspTI	CTTAAG	1 cut(s)	713
BsrBI	CCGCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	473
BsrGI	TGTACA	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	22, 835
BssECI	CCNNGG	2 cut(s)	66, 67
BssMI	GATC	2 cut(s)	93, 460
Bst4CI	ACNGT	3 cut(s)	289, 957, 964
Bst6I	CTCTTC	1 cut(s)	596
BstAFI	CTTAAG	1 cut(s)	713
BstAUI	TGTACA	1 cut(s)	15
BstBAI	YACGTR	3 cut(s)	103, 203, 595
BstBI	TTCGAA	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	2 cut(s)	630, 743
BstF5I	GGATG	2 cut(s)	544, 586
BstFNI	CGCG	2 cut(s)	61, 493
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	2 cut(s)	96, 463
BstMAI	GTCTC	2 cut(s)	278, 494
BstMBI	GATC	2 cut(s)	93, 460
BstMWI	GCNNNNNNNGC	5 cut(s)	106, 141, 233, 851, 938
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	3 cut(s)	6, 66, 67
BstSFI	CTRYAG	2 cut(s)	420, 610
BstSLI	GKGCMC	1 cut(s)	67
BstUI	CGCG	2 cut(s)	61, 493
BstV1I	GCAGC	4 cut(s)	156, 866, 931, 950
BstV2I	GAAGAC	1 cut(s)	591
BsuRI	GGCC	1 cut(s)	616
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	544, 586
BtsIMutI	CAGTG	2 cut(s)	29, 962
BveI	ACCTGC	1 cut(s)	1009
Cac8I	GCNNGC	1 cut(s)	63
CfoI	GCGC	1 cut(s)	394
Cfr13I	GGNCC	2 cut(s)	43, 606
Cfr9I	CCCGGG	1 cut(s)	67
CseI	GACGC	1 cut(s)	748
Csp6I	GTAC	3 cut(s)	16, 240, 1028
CviAII	CATG	5 cut(s)	13, 130, 247, 704, 773
CviQI	GTAC	3 cut(s)	16, 240, 1028
DdeI	CTNAG	2 cut(s)	630, 743
DpnI	GATC	2 cut(s)	95, 462
DpnII	GATC	2 cut(s)	93, 460
Eam1104I	CTCTTC	1 cut(s)	596
EarI	CTCTTC	1 cut(s)	596
EciI	GGCGGA	2 cut(s)	317, 551
Ecl136II	GAGCTC	1 cut(s)	328
Eco24I	GRGCYC	2 cut(s)	74, 330
Eco47I	GGWCC	2 cut(s)	43, 606
Eco53kI	GAGCTC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	352
Eco72I	CACGTG	2 cut(s)	103, 203
Eco88I	CYCGRG	2 cut(s)	67, 884
EcoICRI	GAGCTC	1 cut(s)	328
EcoO109I	RGGNCCY	2 cut(s)	43, 606
EcoRI	GAATTC	1 cut(s)	509
EcoT38I	GRGCYC	2 cut(s)	74, 330
Esp3I	CGTCTC	1 cut(s)	278
FaeI	CATG	5 cut(s)	16, 133, 250, 707, 776
FaqI	GGGAC	2 cut(s)	56, 751
FatI	CATG	5 cut(s)	12, 129, 246, 703, 772
FauI	CCCGC	1 cut(s)	54
Fnu4HI	GCNGC	7 cut(s)	123, 145, 170, 617, 855, 920, 939
FokI	GGATG	2 cut(s)	551, 593
FriOI	GRGCYC	2 cut(s)	74, 330
Fsp4HI	GCNGC	7 cut(s)	123, 145, 170, 617, 855, 920, 939
FspBI	CTAG	2 cut(s)	354, 504
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	7 cut(s)	123, 145, 170, 617, 855, 920, 939
HaeIII	GGCC	1 cut(s)	616
HapII	CCGG	5 cut(s)	8, 50, 68, 319, 680
HgaI	GACGC	1 cut(s)	748
HhaI	GCGC	1 cut(s)	394
Hin1II	CATG	5 cut(s)	16, 133, 250, 707, 776
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HincII	GTYRAC	1 cut(s)	873
HindII	GTYRAC	1 cut(s)	873
HinfI	GANTC	4 cut(s)	218, 296, 308, 747
HpaII	CCGG	5 cut(s)	8, 50, 68, 319, 680
HphI	GGTGA	2 cut(s)	301, 851
Hpy166II	GTNNAC	4 cut(s)	240, 279, 873, 960
Hpy188I	TCNGA	6 cut(s)	113, 198, 325, 376, 465, 987
Hpy188III	TCNNGA	3 cut(s)	517, 680, 902
Hpy8I	GTNNAC	4 cut(s)	240, 279, 873, 960
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	184, 774
HpyCH4III	ACNGT	3 cut(s)	289, 957, 964
HpyCH4IV	ACGT	4 cut(s)	87, 102, 202, 594
HpyCH4V	TGCA	5 cut(s)	4, 400, 932, 938, 998
HpyF10VI	GCNNNNNNNGC	5 cut(s)	106, 141, 233, 851, 938
HpyF3I	CTNAG	2 cut(s)	630, 743
HpySE526I	ACGT	4 cut(s)	87, 102, 202, 594
Hsp92II	CATG	5 cut(s)	16, 133, 250, 707, 776
HspAI	GCGC	1 cut(s)	392
KflI	GGGWCCC	1 cut(s)	43
Kpn2I	TCCGGA	1 cut(s)	679
Kzo9I	GATC	2 cut(s)	93, 460
LmnI	GCTCC	5 cut(s)	39, 159, 321, 697, 1015
Lsp1109I	GCAGC	4 cut(s)	156, 866, 931, 950
LweI	GCATC	2 cut(s)	21, 832
MaeI	CTAG	2 cut(s)	354, 504
MaeII	ACGT	4 cut(s)	87, 102, 202, 594
MaeIII	GTNAC	2 cut(s)	494, 727
MalI	GATC	2 cut(s)	95, 462
MbiI	CCGCTC	1 cut(s)	122
MboI	GATC	2 cut(s)	93, 460
MboII	GAAGA	8 cut(s)	40, 223, 262, 445, 596, 613, 695, 806
MhlI	GDGCHC	3 cut(s)	67, 74, 330
MluCI	AATT	4 cut(s)	466, 509, 543, 945
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	3 cut(s)	108, 546, 1010
MroI	TCCGGA	1 cut(s)	679
MseI	TTAA	3 cut(s)	255, 345, 714
MspCI	CTTAAG	1 cut(s)	713
MspI	CCGG	5 cut(s)	8, 50, 68, 319, 680
MspR9I	CCNGG	3 cut(s)	8, 68, 69
Mva1269I	GAATGC	1 cut(s)	229
MvnI	CGCG	2 cut(s)	61, 493
MwoI	GCNNNNNNNGC	5 cut(s)	106, 141, 233, 851, 938
NciI	CCSGG	3 cut(s)	8, 68, 69
NdeII	GATC	2 cut(s)	93, 460
NlaIII	CATG	5 cut(s)	16, 133, 250, 707, 776
NlaIV	GGNNCC	2 cut(s)	44, 45
NmuCI	GTSAC	2 cut(s)	494, 727
NspI	RCATGY	1 cut(s)	16
NspV	TTCGAA	1 cut(s)	221
PciI	ACATGT	1 cut(s)	12
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	3 cut(s)	218, 308, 747
PkrI	GCNGC	7 cut(s)	124, 146, 171, 618, 856, 921, 940
PleI	GAGTC	1 cut(s)	304
PmaCI	CACGTG	2 cut(s)	103, 203
PmlI	CACGTG	2 cut(s)	103, 203
PpsI	GAGTC	1 cut(s)	304
Ppu21I	YACGTR	3 cut(s)	103, 203, 595
PpuMI	RGGWCCY	2 cut(s)	43, 606
PscI	ACATGT	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	330
Psp5II	RGGWCCY	2 cut(s)	43, 606
PspCI	CACGTG	2 cut(s)	103, 203
PspN4I	GGNNCC	2 cut(s)	44, 45
PspPI	GGNCC	2 cut(s)	43, 606
PspPPI	RGGWCCY	2 cut(s)	43, 606
RsaI	GTAC	3 cut(s)	17, 241, 1029
RsaNI	GTAC	3 cut(s)	16, 240, 1028
SacI	GAGCTC	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	255, 345, 714
SatI	GCNGC	7 cut(s)	123, 145, 170, 617, 855, 920, 939
Sau3AI	GATC	2 cut(s)	93, 460
Sau96I	GGNCC	2 cut(s)	43, 606
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	3 cut(s)	8, 68, 69
SduI	GDGCHC	3 cut(s)	67, 74, 330
SfaNI	GCATC	2 cut(s)	21, 832
SfcI	CTRYAG	2 cut(s)	420, 610
SfuI	TTCGAA	1 cut(s)	221
SinI	GGWCC	2 cut(s)	43, 606
SmaI	CCCGGG	1 cut(s)	69
SmlI	CTYRAG	2 cut(s)	713, 1010
SmoI	CTYRAG	2 cut(s)	713, 1010
Sse9I	AATT	4 cut(s)	466, 509, 543, 945
SsiI	CCGC	7 cut(s)	47, 122, 144, 302, 536, 617, 655
SspMI	CTAG	2 cut(s)	354, 504
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	3 cut(s)	6, 66, 67
TaaI	ACNGT	3 cut(s)	289, 957, 964
TaiI	ACGT	4 cut(s)	90, 105, 205, 597
TaqI	TCGA	3 cut(s)	221, 459, 554
TasI	AATT	4 cut(s)	466, 509, 543, 945
TatI	WGTACW	2 cut(s)	15, 239
TauI	GCSGC	3 cut(s)	125, 147, 619
TfiI	GAWTC	3 cut(s)	218, 308, 747
Tru1I	TTAA	3 cut(s)	255, 345, 714
Tru9I	TTAA	3 cut(s)	255, 345, 714
TscAI	CASTG	2 cut(s)	29, 962
TseFI	GTSAC	2 cut(s)	494, 727
TseI	GCWGC	4 cut(s)	169, 854, 919, 938
Tsp45I	GTSAC	2 cut(s)	494, 727
TspDTI	ATGAA	7 cut(s)	118, 194, 263, 502, 597, 761, 909
TspGWI	ACGGA	1 cut(s)	296
TspMI	CCCGGG	1 cut(s)	67
TspRI	CASTG	2 cut(s)	29, 962
Vha464I	CTTAAG	1 cut(s)	713
VpaK11BI	GGWCC	2 cut(s)	43, 606
XapI	RAATTY	2 cut(s)	466, 509
XceI	RCATGY	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	480
XmaI	CCCGGG	1 cut(s)	67
XspI	CTAG	2 cut(s)	354, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.