FvH4_6g17410

Sulfite exporter TauE/SafE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012993
Physical Location & Seq
Forward (+)
11349460 .. 11353108
3649 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17410.t4

Sequence Viewer

Length: 1389 bp
ATGGCCACGAAAGCCTTCGTTCTCTATCTCTTTTCTACTTTCTCGGTTGCTATTCTGTCTGTGCTGTTCTTCACACACCAGAATGATGACATATCTTACCAGCCCCGCCTTTCTTCTCTCAATTCGAATCTCTTGCACTTGGAAGCCTCGGATAAAGTTTGGCCGGATTTGGCATTTAACTGGAGACTTGTGCTGGCCACAGTGATCGGTTTTCTGGGATCGGCGTGTGGAACTGTGGGAGGGGTAGGAGGGGGTGGCATATTTGTCCCTATGCTTACTTTGATTGTTGGTTTTGATACCAAGTCGGCTGCTGCTATTTCTAAATGTATGATAATGGGGGCTTCTGCATCATCAGTGTGGTACAACTTGAGGGTGCCCCATCCAACAAAGGAAGTTCCCATATTAGATTATGATCTGGCACTTCTCTTTCAACCCGTGCTCATGCTTGGGATCACAATTGGTGTGTCTCTCAGTGTGGTCTTCCCCTTCTGGCTCATCACTGTTCTCATCATTATTCTCTTCTTGGGTACTTCATCAAGGTCTGCTTACAAAGGGGTTGAGATGTGGAAGGAAGAGACTATCCTGAAGAAGGAATTTGCAAGGCAACAAGAAGCTCGAGTTGACTCTCGTGGCGAACTTCTAATTGATGCAGACTATCAACAATTAAATAACAGTGAAGAGAAGTCAATGATGCAAATACTATGTTTCAACCTCAGATGGAAAAGGGTGATGGTCTTAGTTACTCTTTGGGTTGCTTTTCTACTTCTTCAAATCTTCAAGAATGATACAACTACTTGCAGTATCTTGTATTGGGTCCTCTTCTGCTTACAGTTTCCTATAACATTTGTGGTTTTTGGATATGAAGCAATCAAGTTGTACAAAGATTACAAGAAGAGACTGAGCACAGGCAATTCAGAATCAATATGTGAGGCATCAATTGCATGGACTCCAATGAACATAGCATTTTGTGCACTCTGCGGTATCTTGGGAGGCACTGTTGGGGGTCTGCTTGGATCTGGTGGAGGATTCATTCTTGGCCCTCTCCTATTAGAAATAGGTGTTATCCCACAGGTTGCTAGTGCGACAGCTACATTTGTGATGATGTTCTCAGCATCCTTATCGGTTGTGGAGTTCTACCTCCTTAAGAGGTTTCCTATTCCATATGCATTGTACCTCACAAGTGTTTCTATCTTGGCTGGCTTTTGGGGACAGTTTCTTGTAAGGAAAATAGTTACATTTCTCAAGAGAGCATCAATCATAGTATTTGTCCTCTCAGCTGTTATCTTTGCTAGTGCCATCACAATGGGTGTCACAGGAATCAAGTCGAGCCTCCAAATGATAAAAGATGGCGAGTTCATGGGATTCTTGGACTTCTGTAGCAGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauE

Protein Analysis

463

Amino Acids

50.98

Weight (kDa)

8.47

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauE PF01925 68 - 183 2.5e-12 Sulfite exporter TauE/SafE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012993)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36630
fragaria_vesca FvH4_6g17410
malus_domestica MD12G1100900.v1.1 MD14G1095200.v1.1
prunus_persica Prupe.7G121400_v2.0.a1 Prupe.7G121400_v2.0.a1
pyrus_communis pycom12g09930
rosa_chinensis RchiOBHm_Chr3g0471661
rosa_laevigata RLG00000024145
rosa_multiflora Rmu_sc0005631.1_g000013
rosa_roxburghii Rroxscaffold_6G00409680
rosa_rugosa Rorug03G0118600
rosa_samantha Rh3AG169900 Rh3BG195600 Rh3CG186300 Rh3CG195400 Rh3DG179400
rosa_wichuraiana Rw0G008980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 373
AciI CCGC 2 cut(s) 106, 978
AclWI GGATC 3 cut(s) 226, 458, 1021
AcoI YGGCCR 3 cut(s) 3, 161, 195
AcsI RAATTY 1 cut(s) 593
AcuI CTGAAG 1 cut(s) 605
AfaI GTAC 4 cut(s) 362, 529, 878, 1172
AfiI CCNNNNNNNGG 1 cut(s) 589
AflII CTTAAG 1 cut(s) 1142
AgsI TTSAA 4 cut(s) 431, 709, 770, 778
AluBI AGCT 3 cut(s) 614, 1088, 1277
AluI AGCT 3 cut(s) 614, 1088, 1277
Alw21I GWGCWC 3 cut(s) 441, 905, 973
Alw26I GTCTC 4 cut(s) 178, 471, 569, 889
Alw44I GTGCAC 1 cut(s) 969
AlwI GGATC 3 cut(s) 226, 458, 1021
Ama87I CYCGRG 1 cut(s) 615
AoxI GGCC 4 cut(s) 3, 161, 195, 1036
ApaLI GTGCAC 1 cut(s) 969
ApeKI GCWGC 2 cut(s) 308, 311
ApoI RAATTY 1 cut(s) 593
Asp700I GAANNNNTTC 1 cut(s) 14
AspS9I GGNCC 2 cut(s) 814, 1037
AsuHPI GGTGA 1 cut(s) 739
AsuII TTCGAA 1 cut(s) 125
AvaI CYCGRG 1 cut(s) 615
AvaII GGWCC 1 cut(s) 814
BaeGI GKGCMC 2 cut(s) 378, 973
BalI TGGCCA 2 cut(s) 5, 197
BanI GGYRCC 1 cut(s) 373
BauI CACGAG 1 cut(s) 627
BbsI GAAGAC 1 cut(s) 472
Bbv12I GWGCWC 3 cut(s) 441, 905, 973
BbvI GCAGC 2 cut(s) 295, 298
BccI CCATC 5 cut(s) 387, 711, 724, 1304, 1340
BcgI CGANNNNNNTGC 4 cut(s) 115, 149, 1101, 1135
BcoDI GTCTC 4 cut(s) 178, 471, 569, 889
BfaI CTAG 2 cut(s) 1077, 1290
BfmI CTRYAG 1 cut(s) 1375
BfrI CTTAAG 1 cut(s) 1142
BisI GCNGC 2 cut(s) 309, 312
BlsI GCNGC 2 cut(s) 310, 313
Bme18I GGWCC 1 cut(s) 814
BmeT110I CYCGRG 1 cut(s) 615
BmgT120I GGNCC 2 cut(s) 814, 1037
BmiI GGNNCC 2 cut(s) 375, 815
BmsI GCATC 6 cut(s) 356, 637, 681, 941, 1121, 1259
BpiI GAAGAC 1 cut(s) 472
BpmI CTGGAG 1 cut(s) 202
Bpu14I TTCGAA 1 cut(s) 125
BpuEI CTTGAG 2 cut(s) 388, 1226
BsaBI GATNNNNATC 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 147
BsaXI ACNNNNNCTCC 2 cut(s) 981, 1011
Bsc4I CCNNNNNNNGG 1 cut(s) 589
Bse1I ACTGG 1 cut(s) 185
Bse8I GATNNNNATC 1 cut(s) 411
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 2 cut(s) 379, 1112
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 589
BseMII CTCAG 5 cut(s) 484, 727, 890, 1122, 1287
BseNI ACTGG 1 cut(s) 185
BseSI GKGCMC 2 cut(s) 378, 973
BseXI GCAGC 2 cut(s) 295, 298
BshFI GGCC 4 cut(s) 5, 163, 197, 1038
BshNI GGYRCC 1 cut(s) 373
BsiHKAI GWGCWC 3 cut(s) 441, 905, 973
BsiHKCI CYCGRG 1 cut(s) 615
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 2 cut(s) 251, 1221
BslI CCNNNNNNNGG 1 cut(s) 589
BsmAI GTCTC 4 cut(s) 178, 471, 569, 889
BsmFI GGGAC 2 cut(s) 251, 1221
BsnI GGCC 4 cut(s) 5, 163, 197, 1038
BsoBI CYCGRG 1 cut(s) 615
Bsp119I TTCGAA 1 cut(s) 125
Bsp1286I GDGCHC 4 cut(s) 378, 441, 905, 973
Bsp1407I TGTACA 1 cut(s) 876
Bsp143I GATC 5 cut(s) 204, 218, 412, 450, 1013
BspACI CCGC 2 cut(s) 106, 978
BspANI GGCC 4 cut(s) 5, 163, 197, 1038
BspCNI CTCAG 5 cut(s) 483, 726, 891, 1121, 1286
BspLI GGNNCC 2 cut(s) 375, 815
BspPI GGATC 3 cut(s) 226, 458, 1021
BspT104I TTCGAA 1 cut(s) 125
BspT107I GGYRCC 1 cut(s) 373
BspTI CTTAAG 1 cut(s) 1142
BsrGI TGTACA 1 cut(s) 876
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 5 cut(s) 204, 218, 412, 450, 1013
BssSI CACGAG 1 cut(s) 627
Bst2BI CACGAG 1 cut(s) 627
Bst4CI ACNGT 7 cut(s) 202, 235, 502, 674, 831, 997, 1212
Bst6I CTCTTC 5 cut(s) 524, 567, 672, 824, 887
BstAFI CTTAAG 1 cut(s) 1142
BstAPI GCANNNNNTGC 2 cut(s) 938, 968
BstAUI TGTACA 1 cut(s) 876
BstBI TTCGAA 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 195, 1198
BstDEI CTNAG 6 cut(s) 470, 713, 736, 899, 1108, 1273
BstENI CCTNNNNNAGG 1 cut(s) 587
BstF5I GGATG 2 cut(s) 379, 1112
BstKTI GATC 5 cut(s) 207, 221, 415, 453, 1016
BstMAI GTCTC 4 cut(s) 178, 471, 569, 889
BstMBI GATC 5 cut(s) 204, 218, 412, 450, 1013
BstMWI GCNNNNNNNGC 3 cut(s) 11, 938, 968
BstSFI CTRYAG 1 cut(s) 1375
BstSLI GKGCMC 2 cut(s) 378, 973
BstV1I GCAGC 2 cut(s) 295, 298
BstV2I GAAGAC 1 cut(s) 472
BstX2I RGATCY 1 cut(s) 1013
BstXI CCANNNNNNTGG 1 cut(s) 1303
BstYI RGATCY 1 cut(s) 1013
BsuRI GGCC 4 cut(s) 5, 163, 197, 1038
BtsCI GGATG 2 cut(s) 379, 1112
BtsIMutI CAGTG 6 cut(s) 207, 360, 478, 498, 679, 993
Cac8I GCNNGC 2 cut(s) 195, 1198
Cfr13I GGNCC 2 cut(s) 814, 1037
Csp6I GTAC 4 cut(s) 361, 528, 877, 1171
CviAII CATG 3 cut(s) 442, 942, 1357
CviQI GTAC 4 cut(s) 361, 528, 877, 1171
DdeI CTNAG 6 cut(s) 470, 713, 736, 899, 1108, 1273
DpnI GATC 5 cut(s) 206, 220, 414, 452, 1015
DpnII GATC 5 cut(s) 204, 218, 412, 450, 1013
EaeI YGGCCR 3 cut(s) 3, 161, 195
Eam1104I CTCTTC 5 cut(s) 524, 567, 672, 824, 887
EarI CTCTTC 5 cut(s) 524, 567, 672, 824, 887
Eco47I GGWCC 1 cut(s) 814
Eco57I CTGAAG 1 cut(s) 605
Eco88I CYCGRG 1 cut(s) 615
EcoNI CCTNNNNNAGG 1 cut(s) 587
EcoO109I RGGNCCY 1 cut(s) 814
EcoT22I ATGCAT 1 cut(s) 1168
FaeI CATG 3 cut(s) 445, 945, 1360
FalI AAGNNNNNCTT 2 cut(s) 529, 561
FaqI GGGAC 2 cut(s) 251, 1221
FatI CATG 3 cut(s) 441, 941, 1356
FauI CCCGC 1 cut(s) 113
FauNDI CATATG 1 cut(s) 1162
Fnu4HI GCNGC 2 cut(s) 309, 312
FokI GGATG 2 cut(s) 366, 1099
Fsp4HI GCNGC 2 cut(s) 309, 312
FspBI CTAG 2 cut(s) 1077, 1290
GluI GCNGC 2 cut(s) 309, 312
GsuI CTGGAG 1 cut(s) 202
HaeIII GGCC 4 cut(s) 5, 163, 197, 1038
HapII CCGG 1 cut(s) 164
Hin1II CATG 3 cut(s) 445, 945, 1360
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HinfI GANTC 7 cut(s) 127, 623, 917, 946, 1026, 1317, 1362
HpaII CCGG 1 cut(s) 164
HphI GGTGA 1 cut(s) 739
Hpy166II GTNNAC 2 cut(s) 622, 971
Hpy188I TCNGA 3 cut(s) 151, 716, 916
Hpy188III TCNNGA 3 cut(s) 583, 778, 1243
Hpy8I GTNNAC 2 cut(s) 622, 971
HpyAV CCTTC 4 cut(s) 25, 496, 562, 583
HpyCH4III ACNGT 7 cut(s) 202, 235, 502, 674, 831, 997, 1212
HpyCH4V TGCA 9 cut(s) 136, 347, 599, 650, 694, 798, 941, 971, 1166
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 938, 968
HpyF3I CTNAG 6 cut(s) 470, 713, 736, 899, 1108, 1273
Hsp92II CATG 3 cut(s) 445, 945, 1360
Kzo9I GATC 5 cut(s) 204, 218, 412, 450, 1013
Lsp1109I GCAGC 2 cut(s) 295, 298
LweI GCATC 6 cut(s) 356, 637, 681, 941, 1121, 1259
MaeI CTAG 2 cut(s) 1077, 1290
MaeIII GTNAC 3 cut(s) 739, 1231, 1309
MalI GATC 5 cut(s) 206, 220, 414, 452, 1015
MboI GATC 5 cut(s) 204, 218, 412, 450, 1013
MfeI CAATTG 2 cut(s) 456, 936
MflI RGATCY 1 cut(s) 1013
MhlI GDGCHC 4 cut(s) 378, 441, 905, 973
MlsI TGGCCA 2 cut(s) 5, 197
MluCI AATT 7 cut(s) 121, 456, 593, 642, 662, 910, 936
MluNI TGGCCA 2 cut(s) 5, 197
MlyI GAGTC 2 cut(s) 617, 940
MmeI TCCRAC 1 cut(s) 407
Mox20I TGGCCA 2 cut(s) 5, 197
Mph1103I ATGCAT 1 cut(s) 1168
MroXI GAANNNNTTC 1 cut(s) 14
MscI TGGCCA 2 cut(s) 5, 197
MseI TTAA 3 cut(s) 177, 665, 1143
MslI CAYNNNNRTG 3 cut(s) 81, 355, 1301
Msp20I TGGCCA 2 cut(s) 5, 197
MspA1I CMGCKG 1 cut(s) 1277
MspCI CTTAAG 1 cut(s) 1142
MspI CCGG 1 cut(s) 164
MunI CAATTG 2 cut(s) 456, 936
MwoI GCNNNNNNNGC 3 cut(s) 11, 938, 968
NdeI CATATG 1 cut(s) 1162
NdeII GATC 5 cut(s) 204, 218, 412, 450, 1013
NlaIII CATG 3 cut(s) 445, 945, 1360
NlaIV GGNNCC 2 cut(s) 375, 815
NmuCI GTSAC 1 cut(s) 1309
NsiI ATGCAT 1 cut(s) 1168
NspV TTCGAA 1 cut(s) 125
PaeR7I CTCGAG 1 cut(s) 615
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 5 cut(s) 127, 917, 1026, 1317, 1362
PkrI GCNGC 2 cut(s) 310, 313
PleI GAGTC 2 cut(s) 617, 940
PpsI GAGTC 2 cut(s) 617, 940
PpuMI RGGWCCY 1 cut(s) 814
Psp5II RGGWCCY 1 cut(s) 814
PspN4I GGNNCC 2 cut(s) 375, 815
PspPI GGNCC 2 cut(s) 814, 1037
PspPPI RGGWCCY 1 cut(s) 814
PspXI VCTCGAGB 1 cut(s) 615
PsuI RGATCY 1 cut(s) 1013
PvuII CAGCTG 1 cut(s) 1277
RsaI GTAC 4 cut(s) 362, 529, 878, 1172
RsaNI GTAC 4 cut(s) 361, 528, 877, 1171
RseI CAYNNNNRTG 3 cut(s) 81, 355, 1301
SaqAI TTAA 3 cut(s) 177, 665, 1143
SatI GCNGC 2 cut(s) 309, 312
Sau3AI GATC 5 cut(s) 204, 218, 412, 450, 1013
Sau96I GGNCC 2 cut(s) 814, 1037
SchI GAGTC 2 cut(s) 617, 940
SduI GDGCHC 4 cut(s) 378, 441, 905, 973
SfaNI GCATC 6 cut(s) 356, 637, 681, 941, 1121, 1259
SfcI CTRYAG 1 cut(s) 1375
Sfr274I CTCGAG 1 cut(s) 615
SfuI TTCGAA 1 cut(s) 125
SinI GGWCC 1 cut(s) 814
SlaI CTCGAG 1 cut(s) 615
SmiMI CAYNNNNRTG 3 cut(s) 81, 355, 1301
SmlI CTYRAG 4 cut(s) 367, 615, 1142, 1241
SmoI CTYRAG 4 cut(s) 367, 615, 1142, 1241
Sse9I AATT 7 cut(s) 121, 456, 593, 642, 662, 910, 936
SsiI CCGC 2 cut(s) 106, 978
SspMI CTAG 2 cut(s) 1077, 1290
TaaI ACNGT 7 cut(s) 202, 235, 502, 674, 831, 997, 1212
TaqI TCGA 3 cut(s) 125, 616, 1325
TasI AATT 7 cut(s) 121, 456, 593, 642, 662, 910, 936
TatI WGTACW 1 cut(s) 876
TfiI GAWTC 5 cut(s) 127, 917, 1026, 1317, 1362
Tru1I TTAA 3 cut(s) 177, 665, 1143
Tru9I TTAA 3 cut(s) 177, 665, 1143
TscAI CASTG 6 cut(s) 207, 360, 478, 505, 679, 1000
TseFI GTSAC 1 cut(s) 1309
TseI GCWGC 2 cut(s) 308, 311
Tsp45I GTSAC 1 cut(s) 1309
TspDTI ATGAA 5 cut(s) 522, 876, 968, 1018, 1345
TspRI CASTG 6 cut(s) 207, 360, 478, 505, 679, 1000
Vha464I CTTAAG 1 cut(s) 1142
VneI GTGCAC 1 cut(s) 969
VpaK11BI GGWCC 1 cut(s) 814
XagI CCTNNNNNAGG 1 cut(s) 587
XapI RAATTY 1 cut(s) 593
XhoI CTCGAG 1 cut(s) 615
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 2 cut(s) 1077, 1290
Zsp2I ATGCAT 1 cut(s) 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.