Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0012993

Physical Location & Seq

Genomic Coordinates Reverse (-)

11799549 .. 11802849

Gene Structure 3301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g09930.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGCCACAAAAGGCTTAGTGCTCTATCTTCTCTCAGGTTTCTCTGTGGCTGTTTTCTCTGTGCTCTTCATCTCTCACCAATATGATTACAACTCTCCCCAAATCCGCCTTTCCAATTCTCTCGGTTCCAATCTCTCCCACTTCTCCACCGCCGATAAAACGTGGCCTGAATTGAAGTTCGGTTGGAGGCTTGTGTTGGCAACAGTGATTGGATTTCTGGGTTCGGCATGTGGGACGGTGGGAGGAGTAGGAGGGGGTGGAATATTTGTTCCTATGCTTACTTTGATTGTTGGATTTGATACCAAGTCAGCTGCTGCCCTCTCTAAATGTATGATAATGGGGGCATCAGCATCATCAGTGTGGTACAATCTGAGAGTGCCTCATCCAACAAAAGAAGTGCCAATTATAGACTATGATTTGGCCCTTCTCTTTCAGCCCATGCTCATGCTTGGCATCACCTTGGGTGTTGCTCTCAGTGTCGTCTTCCCCTACTGGCTCATCACTGTCCTCATCATCATTCTCTTCCTCGGGACTTCATCAAGGTCTTGTTTTAAAGGGGCTGAGATGTGGAAGGAAGAGACTATTTTAAAGAAAGAATATGCAAGGCAGCAAGAAGCTACGGTGAACTCTCGGGGCGAACTTCTAATTGATGCACAGTATGAGTCATTACTTCCAAGAGAGGAGAAATCAATGATGCAAATACTAATATTCAACCTTAGATGGGAAAGAGTGTTGGTGCTGGTAGCCTTATGGGTTCTTTTCCTACTTCTTCAAATCCTCAAGAATGATGTGACTGCTTGCAGTACATGGTATTGGGTCCTCTTCTGCTTACAGTTTCCCATAGCATTTGGAGTGTTTGGATATGAATCGGTGAAGCTGTGTAAAGAGTACAAGAAGAGAATGAGCACAGGGAACACAGAGTCAATATGCGAGGCTTCGATCGCATGGACTCCAATTCACATTGCATTCTGTGCTCTATGTGGAATCTTGGGAGGCACTGTTGGGGGCTTACTTGGATCAGGTGGAGGTTTCGTTCTTGGTCCTCTCCTGCTTGAGATAGGTGTCATCCCACAGGTTGCTAGTGCAACCGCCACATTCGTGATGACATTCTCGGCATCGTTATCGGTCGTGGAGTTCTACTTGCTCAAGAGGTTTCCAATTCCATATGCTATATACCTCACAAGTGTTTCGATCTTGGCTGGCTTCTGGGGACAGTGTAATCGGCATCAAGATGAGCATCCAAATGATATCAAATCACGAGTTTATGGGATTCTTGGACTTCTGCAACAGTCAGTGATCGTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TauE

Protein Analysis

436

Amino Acids

47.83

Weight (kDa)

8.25

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36630
fragaria_vesca	FvH4_6g17410
malus_domestica	MD12G1100900.v1.1 MD14G1095200.v1.1
prunus_persica	Prupe.7G121400_v2.0.a1 Prupe.7G121400_v2.0.a1
pyrus_communis	pycom12g09930
rosa_chinensis	RchiOBHm_Chr3g0471661
rosa_laevigata	RLG00000024145
rosa_multiflora	Rmu_sc0005631.1_g000013
rosa_roxburghii	Rroxscaffold_6G00409680
rosa_rugosa	Rorug03G0118600
rosa_samantha	Rh3AG169900 Rh3BG195600 Rh3CG186300 Rh3CG195400 Rh3DG179400
rosa_wichuraiana	Rw0G008980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	106, 150, 1089
AclWI	GGATC	1 cut(s)	1024
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	3 cut(s)	365, 805, 890
AfiI	CCNNNNNNNGG	1 cut(s)	721
AgsI	TTSAA	3 cut(s)	175, 712, 773
AleI	CACNNNNGTG	1 cut(s)	1097
AloI	GAACNNNNNNTCC	4 cut(s)	252, 284, 1017, 1049
AluBI	AGCT	3 cut(s)	311, 617, 877
AluI	AGCT	3 cut(s)	311, 617, 877
Alw21I	GWGCWC	4 cut(s)	24, 66, 908, 976
Alw26I	GTCTC	1 cut(s)	572
AlwI	GGATC	1 cut(s)	1024
AlwNI	CAGNNNCTG	1 cut(s)	314
Ama87I	CYCGRG	2 cut(s)	527, 630
AoxI	GGCC	3 cut(s)	3, 164, 420
ApeKI	GCWGC	3 cut(s)	311, 314, 607
AspS9I	GGNCC	3 cut(s)	421, 817, 1040
AsuHPI	GGTGA	4 cut(s)	68, 448, 634, 883
AvaI	CYCGRG	2 cut(s)	527, 630
AvaII	GGWCC	2 cut(s)	817, 1040
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	1257
BbsI	GAAGAC	1 cut(s)	475
Bbv12I	GWGCWC	4 cut(s)	24, 66, 908, 976
BbvI	GCAGC	3 cut(s)	298, 301, 619
BccI	CCATC	1 cut(s)	714
BcgI	CGANNNNNNTGC	2 cut(s)	1104, 1138
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	1 cut(s)	1080
BisI	GCNGC	3 cut(s)	312, 315, 608
BlsI	GCNGC	3 cut(s)	313, 316, 609
Bme18I	GGWCC	2 cut(s)	817, 1040
BmeT110I	CYCGRG	2 cut(s)	527, 630
BmgT120I	GGNCC	3 cut(s)	421, 817, 1040
BmiI	GGNNCC	2 cut(s)	127, 818
BmsI	GCATC	8 cut(s)	353, 359, 462, 640, 684, 1124, 1234, 1246
BpiI	GAAGAC	1 cut(s)	475
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
BpuEI	CTTGAG	3 cut(s)	764, 1073, 1130
BsaBI	GATNNNNATC	2 cut(s)	865, 1236
BsaJI	CCNNGG	2 cut(s)	459, 526
BsaXI	ACNNNNNCTCC	4 cut(s)	984, 1014, 1017, 1047
Bsc4I	CCNNNNNNNGG	1 cut(s)	721
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	960
Bse8I	GATNNNNATC	2 cut(s)	865, 1236
BseDI	CCNNGG	2 cut(s)	459, 526
BseGI	GGATG	3 cut(s)	382, 1065, 1237
BseJI	GATNNNNATC	2 cut(s)	865, 1236
BseLI	CCNNNNNNNGG	1 cut(s)	721
BseMI	GCAATG	1 cut(s)	960
BseMII	CTCAG	4 cut(s)	48, 362, 487, 552
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	2 cut(s)	258, 695
BseXI	GCAGC	3 cut(s)	298, 301, 619
Bsh1285I	CGRYCG	2 cut(s)	942, 1128
BshFI	GGCC	3 cut(s)	5, 166, 422
BsiEI	CGRYCG	2 cut(s)	942, 1128
BsiHKAI	GWGCWC	4 cut(s)	24, 66, 908, 976
BsiHKCI	CYCGRG	2 cut(s)	527, 630
BslFI	GGGAC	3 cut(s)	247, 544, 1224
BslI	CCNNNNNNNGG	1 cut(s)	721
BsmAI	GTCTC	1 cut(s)	572
BsmFI	GGGAC	3 cut(s)	247, 544, 1224
BsmI	GAATGC	1 cut(s)	965
BsnI	GGCC	3 cut(s)	5, 166, 422
BsoBI	CYCGRG	2 cut(s)	527, 630
Bsp1286I	GDGCHC	4 cut(s)	24, 66, 908, 976
Bsp143I	GATC	4 cut(s)	939, 1016, 1191, 1296
BspACI	CCGC	3 cut(s)	106, 150, 1089
BspANI	GGCC	3 cut(s)	5, 166, 422
BspCNI	CTCAG	4 cut(s)	47, 363, 486, 553
BspLI	GGNNCC	2 cut(s)	127, 818
BspPI	GGATC	1 cut(s)	1024
BspQI	GCTCTTC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	960
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	2 cut(s)	459, 526
BssMI	GATC	4 cut(s)	939, 1016, 1191, 1296
BssSI	CACGAG	1 cut(s)	1257
BssT1I	CCWWGG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	1257
Bst4CI	ACNGT	9 cut(s)	205, 238, 505, 622, 657, 834, 1000, 1215, 1290
Bst6I	CTCTTC	5 cut(s)	71, 527, 570, 827, 890
BstAPI	GCANNNNNTGC	1 cut(s)	971
BstC8I	GCNNGC	2 cut(s)	799, 1201
BstDEI	CTNAG	6 cut(s)	16, 34, 371, 473, 561, 716
BstF5I	GGATG	3 cut(s)	382, 1065, 1237
BstKTI	GATC	4 cut(s)	942, 1019, 1194, 1299
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	4 cut(s)	939, 1016, 1191, 1296
BstMCI	CGRYCG	2 cut(s)	942, 1128
BstMWI	GCNNNNNNNGC	2 cut(s)	941, 971
BstNSI	RCATGY	1 cut(s)	231
BstV1I	GCAGC	3 cut(s)	298, 301, 619
BstV2I	GAAGAC	1 cut(s)	475
BsuRI	GGCC	3 cut(s)	5, 166, 422
BtsCI	GGATG	3 cut(s)	382, 1065, 1237
BtsIMutI	CAGTG	7 cut(s)	210, 363, 481, 501, 996, 1220, 1299
Cac8I	GCNNGC	2 cut(s)	799, 1201
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr13I	GGNCC	3 cut(s)	421, 817, 1040
Csp6I	GTAC	3 cut(s)	364, 804, 889
CviAII	CATG	5 cut(s)	228, 439, 445, 807, 945
CviQI	GTAC	3 cut(s)	364, 804, 889
DdeI	CTNAG	6 cut(s)	16, 34, 371, 473, 561, 716
DpnI	GATC	4 cut(s)	941, 1018, 1193, 1298
DpnII	GATC	4 cut(s)	939, 1016, 1191, 1296
DraI	TTTAAA	2 cut(s)	553, 588
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	5 cut(s)	71, 527, 570, 827, 890
EarI	CTCTTC	5 cut(s)	71, 527, 570, 827, 890
EciI	GGCGGA	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	459
Eco32I	GATATC	1 cut(s)	1249
Eco47I	GGWCC	2 cut(s)	817, 1040
Eco88I	CYCGRG	2 cut(s)	527, 630
EcoO109I	RGGNCCY	1 cut(s)	817
EcoRV	GATATC	1 cut(s)	1249
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	5 cut(s)	231, 442, 448, 810, 948
FaqI	GGGAC	3 cut(s)	247, 544, 1224
FatI	CATG	5 cut(s)	227, 438, 444, 806, 944
FauNDI	CATATG	1 cut(s)	1165
Fnu4HI	GCNGC	3 cut(s)	312, 315, 608
FokI	GGATG	3 cut(s)	369, 1052, 1224
Fsp4HI	GCNGC	3 cut(s)	312, 315, 608
FspBI	CTAG	1 cut(s)	1080
GluI	GCNGC	3 cut(s)	312, 315, 608
HaeIII	GGCC	3 cut(s)	5, 166, 422
Hin1II	CATG	5 cut(s)	231, 442, 448, 810, 948
HinfI	GANTC	6 cut(s)	662, 866, 920, 949, 984, 1270
HphI	GGTGA	4 cut(s)	68, 448, 634, 883
Hpy166II	GTNNAC	1 cut(s)	625
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	6 cut(s)	529, 781, 1099, 1147, 1229, 1257
Hpy8I	GTNNAC	1 cut(s)	625
HpyAV	CCTTC	2 cut(s)	434, 565
HpyCH4III	ACNGT	9 cut(s)	205, 238, 505, 622, 657, 834, 1000, 1215, 1290
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	7 cut(s)	602, 653, 697, 801, 965, 1085, 1285
HpyF10VI	GCNNNNNNNGC	2 cut(s)	941, 971
HpyF3I	CTNAG	6 cut(s)	16, 34, 371, 473, 561, 716
HpySE526I	ACGT	1 cut(s)	161
Hsp92II	CATG	5 cut(s)	231, 442, 448, 810, 948
Kzo9I	GATC	4 cut(s)	939, 1016, 1191, 1296
LguI	GCTCTTC	1 cut(s)	71
Lsp1109I	GCAGC	3 cut(s)	298, 301, 619
LweI	GCATC	8 cut(s)	353, 359, 462, 640, 684, 1124, 1234, 1246
MaeI	CTAG	1 cut(s)	1080
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	790
MalI	GATC	4 cut(s)	941, 1018, 1193, 1298
MboI	GATC	4 cut(s)	939, 1016, 1191, 1296
MboII	GAAGA	8 cut(s)	20, 58, 475, 514, 587, 761, 814, 907
MhlI	GDGCHC	4 cut(s)	24, 66, 908, 976
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	115, 170, 402, 645, 954, 1158
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	671, 929, 943
MmeI	TCCRAC	3 cut(s)	164, 271, 410
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	552, 587
MslI	CAYNNNNRTG	6 cut(s)	81, 358, 443, 1097, 1230, 1242
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	311
Mva1269I	GAATGC	1 cut(s)	965
MwoI	GCNNNNNNNGC	2 cut(s)	941, 971
NdeI	CATATG	1 cut(s)	1165
NdeII	GATC	4 cut(s)	939, 1016, 1191, 1296
NlaIII	CATG	5 cut(s)	231, 442, 448, 810, 948
NlaIV	GGNNCC	2 cut(s)	127, 818
NmeAIII	GCCGAG	1 cut(s)	1091
NmuCI	GTSAC	1 cut(s)	790
NspI	RCATGY	1 cut(s)	231
OliI	CACNNNNGTG	1 cut(s)	1097
PciSI	GCTCTTC	1 cut(s)	71
PctI	GAATGC	1 cut(s)	965
PfeI	GAWTC	3 cut(s)	866, 984, 1270
PkrI	GCNGC	3 cut(s)	313, 316, 609
Ple19I	CGATCG	1 cut(s)	942
PleI	GAGTC	3 cut(s)	670, 928, 943
PpsI	GAGTC	3 cut(s)	670, 928, 943
PpuMI	RGGWCCY	1 cut(s)	817
Psp5II	RGGWCCY	1 cut(s)	817
PspN4I	GGNNCC	2 cut(s)	127, 818
PspPI	GGNCC	3 cut(s)	421, 817, 1040
PspPPI	RGGWCCY	1 cut(s)	817
PstNI	CAGNNNCTG	1 cut(s)	314
PvuI	CGATCG	1 cut(s)	942
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	3 cut(s)	365, 805, 890
RsaNI	GTAC	3 cut(s)	364, 804, 889
RseI	CAYNNNNRTG	6 cut(s)	81, 358, 443, 1097, 1230, 1242
SapI	GCTCTTC	1 cut(s)	71
SaqAI	TTAA	2 cut(s)	552, 587
SatI	GCNGC	3 cut(s)	312, 315, 608
Sau3AI	GATC	4 cut(s)	939, 1016, 1191, 1296
Sau96I	GGNCC	3 cut(s)	421, 817, 1040
SchI	GAGTC	3 cut(s)	671, 929, 943
SduI	GDGCHC	4 cut(s)	24, 66, 908, 976
SfaNI	GCATC	8 cut(s)	353, 359, 462, 640, 684, 1124, 1234, 1246
SinI	GGWCC	2 cut(s)	817, 1040
SmiMI	CAYNNNNRTG	6 cut(s)	81, 358, 443, 1097, 1230, 1242
SmlI	CTYRAG	3 cut(s)	779, 1052, 1145
SmoI	CTYRAG	3 cut(s)	779, 1052, 1145
Sse9I	AATT	6 cut(s)	115, 170, 402, 645, 954, 1158
SsiI	CCGC	3 cut(s)	106, 150, 1089
SspI	AATATT	2 cut(s)	264, 708
SspMI	CTAG	1 cut(s)	1080
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	9 cut(s)	205, 238, 505, 622, 657, 834, 1000, 1215, 1290
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	2 cut(s)	938, 1190
TaqII	GACCGA	1 cut(s)	1114
TasI	AATT	6 cut(s)	115, 170, 402, 645, 954, 1158
TatI	WGTACW	2 cut(s)	803, 888
TfiI	GAWTC	3 cut(s)	866, 984, 1270
Tru1I	TTAA	2 cut(s)	552, 587
Tru9I	TTAA	2 cut(s)	552, 587
TscAI	CASTG	7 cut(s)	210, 363, 481, 508, 1003, 1220, 1299
TseFI	GTSAC	1 cut(s)	790
TseI	GCWGC	3 cut(s)	311, 314, 607
Tsp45I	GTSAC	1 cut(s)	790
TspDTI	ATGAA	3 cut(s)	58, 525, 879
TspRI	CASTG	7 cut(s)	210, 363, 481, 508, 1003, 1220, 1299
VpaK11BI	GGWCC	2 cut(s)	817, 1040
XceI	RCATGY	1 cut(s)	231
XspI	CTAG	1 cut(s)	1080

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.