Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0012993

Physical Location & Seq

Genomic Coordinates Reverse (-)

15741804 .. 15745827

Gene Structure 4024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1100900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGGCTACAAGAGGCTTAGTGCTCTATCTTCTCTCAAGTTTCTCTGTGGCTGTCTTCTCTGTGTTCTTCATCTCTCACCAATATGATTCCTACTCTCCCCAAATCGGCCTTTCCAATTCTCTCAGTTCCAATCTCTCCCACTTCTCCACCACCGATAAAACGTGGCCTGAATTGAAGTTCAGTTGGAGGCTTGTGCTGGCAACAGTGATTGGATTTCTGGGTTCGGCATGTGGGACGGTGGGAGGAGTAGGAGGGGGTGGAATATTTGTTCCTATGCTTACTTTGATTGTTGGATTTGATACCAAGTCTGCTGCTGCCCTCTCTAAATGTATGATAATGGGGGCATCAGCATCATCAGTGTGGTACAATCTGAGAGTGCCTCATCCAACAAAAGAAGTGCCAATCATAGACTATGATTTGGCCCTTCTCTTTCAGCCCATGCTCATGCTTGGCATCACCTTGGGTGTTGCTCTCAGTGTCGTCTTCCCCTACTGGCTCATCACTGTCCTCATCATCATTCTCTTCCTCGGTACTTCATCAAGGTCTTGTTTTAAGGGGGCTGAGATGTGGAAGGAAGAGACTATTTTAAAGAAAGAATATGCAAGGCAGCAAGCAGCTACAGTGAGCTCTCGGGGCGAACTTCTAATTGATGCACAGTACGAGTCATTACTTCCAAGAGAAGAGAAATCAATGATGCAAATACTGATGTTCAACCTTAGATGGGAAAGAGTGTTGGTGCTGGTAGCTTTATGGGTTCTTTTCCTACTTCTTCAAATCCTCAAGAATGATGTAACTGCTTGCAGTACATGGTATTGGGTCCTCTTCTGCTTACAGTTTCCCATAGCACTTGGAGTGTTTGGATATGAATCGGTGAAGCTGTGTAAAGAGTACAAGAAGAGAATGAGCGCAGGGAACACAGAGTCAATATGCGAGGCTTCGATCGCATGGACTCCAATTCACATTGCATTCTGTGCTCTATGTGGAATCTTGGGAGGCACTGTTGGGGGCTTACTTGGATCAGGTGGAGGTTTCGTTCTTGGCCCTCTCCTGCTTGAGATAGGTGTCATCCCACAGGTTGCTAGTGCAACCGCCACATTCGTGATGACATTCTCGGCATCATTATCGGTCGTGGAGTTCTACTTGCTCAAGAGGTTTCCAATTCCATATGCTATATACCTCACAAGTGTTTCGATCTTGGCTGGCTTCTGGGGACAGTTCCTTGTACGAAGAGTTGTCTCGATTCTAAAGAGAGCATCAATCATCGTATTCATCCTCTCTGGTGTCATCTTTGCTAGCGCTATCACAATGGGTGTAATCGGCATCAAGATGAGCCTCCAAATGATATCAAATCACGAGTTTATGGGATTCTTGGACTTCTGCAACAGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TauE

Protein Analysis

464

Amino Acids

50.82

Weight (kDa)

8.72

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TauE	PF01925	69 - 187	2.9e-12	Sulfite exporter TauE/SafE
TauE	PF01925	325 - 431	2.5e-10	Sulfite exporter TauE/SafE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36630
fragaria_vesca	FvH4_6g17410
malus_domestica	MD12G1100900.v1.1 MD14G1095200.v1.1
prunus_persica	Prupe.7G121400_v2.0.a1 Prupe.7G121400_v2.0.a1
pyrus_communis	pycom12g09930
rosa_chinensis	RchiOBHm_Chr3g0471661
rosa_laevigata	RLG00000024145
rosa_multiflora	Rmu_sc0005631.1_g000013
rosa_roxburghii	Rroxscaffold_6G00409680
rosa_rugosa	Rorug03G0118600
rosa_samantha	Rh3AG169900 Rh3BG195600 Rh3CG186300 Rh3CG195400 Rh3DG179400
rosa_wichuraiana	Rw0G008980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1089
AclWI	GGATC	1 cut(s)	1024
AfaI	GTAC	6 cut(s)	365, 532, 659, 805, 890, 1224
AfeI	AGCGCT	1 cut(s)	1297
AfiI	CCNNNNNNNGG	2 cut(s)	104, 721
AgsI	TTSAA	3 cut(s)	175, 712, 773
AleI	CACNNNNGTG	1 cut(s)	1097
AloI	GAACNNNNNNTCC	4 cut(s)	252, 284, 1017, 1049
AluBI	AGCT	4 cut(s)	617, 627, 746, 877
AluI	AGCT	4 cut(s)	617, 627, 746, 877
Alw21I	GWGCWC	3 cut(s)	24, 629, 976
Alw26I	GTCTC	2 cut(s)	572, 1240
AlwI	GGATC	1 cut(s)	1024
Ama87I	CYCGRG	1 cut(s)	630
Aor51HI	AGCGCT	1 cut(s)	1297
AoxI	GGCC	4 cut(s)	106, 164, 420, 1039
ApeKI	GCWGC	4 cut(s)	311, 314, 607, 614
AspLEI	GCGC	2 cut(s)	908, 1298
AspS9I	GGNCC	3 cut(s)	421, 817, 1040
AsuHPI	GGTGA	3 cut(s)	68, 448, 883
AsuNHI	GCTAGC	1 cut(s)	1292
AvaI	CYCGRG	1 cut(s)	630
AvaII	GGWCC	1 cut(s)	817
BanII	GRGCYC	1 cut(s)	629
BauI	CACGAG	1 cut(s)	1352
BbsI	GAAGAC	2 cut(s)	46, 475
Bbv12I	GWGCWC	3 cut(s)	24, 629, 976
BbvI	GCAGC	4 cut(s)	298, 301, 619, 626
BccI	CCATC	1 cut(s)	714
BcgI	CGANNNNNNTGC	2 cut(s)	1104, 1138
BcoDI	GTCTC	2 cut(s)	572, 1240
BfaI	CTAG	2 cut(s)	1080, 1293
BfmI	CTRYAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	1299
BisI	GCNGC	4 cut(s)	312, 315, 608, 615
BlsI	GCNGC	4 cut(s)	313, 316, 609, 616
Bme18I	GGWCC	1 cut(s)	817
BmeT110I	CYCGRG	1 cut(s)	630
BmgT120I	GGNCC	3 cut(s)	421, 817, 1040
BmiI	GGNNCC	1 cut(s)	818
BmsI	GCATC	8 cut(s)	353, 359, 462, 640, 684, 1124, 1262, 1329
BmtI	GCTAGC	1 cut(s)	1296
BpiI	GAAGAC	2 cut(s)	46, 475
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
BpuEI	CTTGAG	4 cut(s)	19, 764, 1073, 1130
BsaBI	GATNNNNATC	1 cut(s)	865
BsaJI	CCNNGG	2 cut(s)	459, 526
BsaXI	ACNNNNNCTCC	4 cut(s)	984, 1014, 1017, 1047
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 721
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	960
Bse8I	GATNNNNATC	1 cut(s)	865
BseDI	CCNNGG	2 cut(s)	459, 526
BseGI	GGATG	3 cut(s)	382, 1065, 1269
BseJI	GATNNNNATC	1 cut(s)	865
BseLI	CCNNNNNNNGG	2 cut(s)	104, 721
BseMI	GCAATG	1 cut(s)	960
BseMII	CTCAG	4 cut(s)	136, 362, 487, 552
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	1 cut(s)	258
BseXI	GCAGC	4 cut(s)	298, 301, 619, 626
Bsh1285I	CGRYCG	2 cut(s)	942, 1128
BshFI	GGCC	4 cut(s)	108, 166, 422, 1041
BsiEI	CGRYCG	2 cut(s)	942, 1128
BsiHKAI	GWGCWC	3 cut(s)	24, 629, 976
BsiHKCI	CYCGRG	1 cut(s)	630
BslFI	GGGAC	2 cut(s)	247, 1224
BslI	CCNNNNNNNGG	2 cut(s)	104, 721
BsmAI	GTCTC	2 cut(s)	572, 1240
BsmFI	GGGAC	2 cut(s)	247, 1224
BsmI	GAATGC	1 cut(s)	965
BsnI	GGCC	4 cut(s)	108, 166, 422, 1041
BsoBI	CYCGRG	1 cut(s)	630
Bsp1286I	GDGCHC	3 cut(s)	24, 629, 976
Bsp143I	GATC	3 cut(s)	939, 1016, 1191
BspACI	CCGC	1 cut(s)	1089
BspANI	GGCC	4 cut(s)	108, 166, 422, 1041
BspCNI	CTCAG	4 cut(s)	135, 363, 486, 553
BspLI	GGNNCC	1 cut(s)	818
BspOI	GCTAGC	1 cut(s)	1296
BspPI	GGATC	1 cut(s)	1024
BsrDI	GCAATG	1 cut(s)	960
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	2 cut(s)	459, 526
BssMI	GATC	3 cut(s)	939, 1016, 1191
BssSI	CACGAG	1 cut(s)	1352
BssT1I	CCWWGG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	1352
Bst4CI	ACNGT	9 cut(s)	205, 238, 505, 622, 657, 834, 1000, 1215, 1385
Bst6I	CTCTTC	6 cut(s)	527, 570, 675, 827, 890, 1222
BstAPI	GCANNNNNTGC	1 cut(s)	971
BstC8I	GCNNGC	5 cut(s)	198, 612, 799, 1201, 1294
BstDEI	CTNAG	6 cut(s)	16, 122, 371, 473, 561, 716
BstF5I	GGATG	3 cut(s)	382, 1065, 1269
BstH2I	RGCGCY	1 cut(s)	1299
BstHHI	GCGC	2 cut(s)	908, 1298
BstKTI	GATC	3 cut(s)	942, 1019, 1194
BstMAI	GTCTC	2 cut(s)	572, 1240
BstMBI	GATC	3 cut(s)	939, 1016, 1191
BstMCI	CGRYCG	2 cut(s)	942, 1128
BstMWI	GCNNNNNNNGC	3 cut(s)	633, 941, 971
BstNSI	RCATGY	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	618
BstV1I	GCAGC	4 cut(s)	298, 301, 619, 626
BstV2I	GAAGAC	2 cut(s)	46, 475
BsuRI	GGCC	4 cut(s)	108, 166, 422, 1041
BtsCI	GGATG	3 cut(s)	382, 1065, 1269
BtsIMutI	CAGTG	6 cut(s)	210, 363, 481, 501, 627, 996
Cac8I	GCNNGC	5 cut(s)	198, 612, 799, 1201, 1294
CfoI	GCGC	2 cut(s)	908, 1298
Cfr13I	GGNCC	3 cut(s)	421, 817, 1040
Csp6I	GTAC	6 cut(s)	364, 531, 658, 804, 889, 1223
CviAII	CATG	5 cut(s)	228, 439, 445, 807, 945
CviQI	GTAC	6 cut(s)	364, 531, 658, 804, 889, 1223
DdeI	CTNAG	6 cut(s)	16, 122, 371, 473, 561, 716
DpnI	GATC	3 cut(s)	941, 1018, 1193
DpnII	GATC	3 cut(s)	939, 1016, 1191
DraI	TTTAAA	1 cut(s)	588
Eam1104I	CTCTTC	6 cut(s)	527, 570, 675, 827, 890, 1222
EarI	CTCTTC	6 cut(s)	527, 570, 675, 827, 890, 1222
Ecl136II	GAGCTC	1 cut(s)	627
Eco130I	CCWWGG	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	629
Eco32I	GATATC	1 cut(s)	1344
Eco47I	GGWCC	1 cut(s)	817
Eco47III	AGCGCT	1 cut(s)	1297
Eco53kI	GAGCTC	1 cut(s)	627
Eco88I	CYCGRG	1 cut(s)	630
EcoICRI	GAGCTC	1 cut(s)	627
EcoO109I	RGGNCCY	1 cut(s)	817
EcoRV	GATATC	1 cut(s)	1344
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	629
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	5 cut(s)	231, 442, 448, 810, 948
FaqI	GGGAC	2 cut(s)	247, 1224
FatI	CATG	5 cut(s)	227, 438, 444, 806, 944
FauNDI	CATATG	1 cut(s)	1165
Fnu4HI	GCNGC	4 cut(s)	312, 315, 608, 615
FokI	GGATG	3 cut(s)	369, 1052, 1256
FriOI	GRGCYC	1 cut(s)	629
Fsp4HI	GCNGC	4 cut(s)	312, 315, 608, 615
FspBI	CTAG	2 cut(s)	1080, 1293
GlaI	GCGC	2 cut(s)	907, 1297
GluI	GCNGC	4 cut(s)	312, 315, 608, 615
HaeII	RGCGCY	1 cut(s)	1299
HaeIII	GGCC	4 cut(s)	108, 166, 422, 1041
HhaI	GCGC	2 cut(s)	908, 1298
Hin1II	CATG	5 cut(s)	231, 442, 448, 810, 948
Hin6I	GCGC	2 cut(s)	906, 1296
HinP1I	GCGC	2 cut(s)	906, 1296
HinfI	GANTC	8 cut(s)	86, 662, 866, 920, 949, 984, 1240, 1365
HphI	GGTGA	3 cut(s)	68, 448, 883
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	6 cut(s)	781, 1099, 1147, 1237, 1324, 1352
HpyAV	CCTTC	2 cut(s)	434, 565
HpyCH4III	ACNGT	9 cut(s)	205, 238, 505, 622, 657, 834, 1000, 1215, 1385
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	7 cut(s)	602, 653, 697, 801, 965, 1085, 1380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	633, 941, 971
HpyF3I	CTNAG	6 cut(s)	16, 122, 371, 473, 561, 716
HpySE526I	ACGT	1 cut(s)	161
Hsp92II	CATG	5 cut(s)	231, 442, 448, 810, 948
HspAI	GCGC	2 cut(s)	906, 1296
Kzo9I	GATC	3 cut(s)	939, 1016, 1191
Lsp1109I	GCAGC	4 cut(s)	298, 301, 619, 626
LweI	GCATC	8 cut(s)	353, 359, 462, 640, 684, 1124, 1262, 1329
MaeI	CTAG	2 cut(s)	1080, 1293
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	790
MalI	GATC	3 cut(s)	941, 1018, 1193
MboI	GATC	3 cut(s)	939, 1016, 1191
MhlI	GDGCHC	3 cut(s)	24, 629, 976
MluCI	AATT	5 cut(s)	115, 170, 645, 954, 1158
MlyI	GAGTC	3 cut(s)	671, 929, 943
MmeI	TCCRAC	3 cut(s)	164, 271, 410
MseI	TTAA	2 cut(s)	552, 587
MslI	CAYNNNNRTG	5 cut(s)	81, 358, 443, 1097, 1325
Mva1269I	GAATGC	1 cut(s)	965
MwoI	GCNNNNNNNGC	3 cut(s)	633, 941, 971
NdeI	CATATG	1 cut(s)	1165
NdeII	GATC	3 cut(s)	939, 1016, 1191
NheI	GCTAGC	1 cut(s)	1292
NlaIII	CATG	5 cut(s)	231, 442, 448, 810, 948
NlaIV	GGNNCC	1 cut(s)	818
NmeAIII	GCCGAG	1 cut(s)	1091
NspI	RCATGY	1 cut(s)	231
OliI	CACNNNNGTG	1 cut(s)	1097
PctI	GAATGC	1 cut(s)	965
PfeI	GAWTC	5 cut(s)	86, 866, 984, 1240, 1365
PkrI	GCNGC	4 cut(s)	313, 316, 609, 616
Ple19I	CGATCG	1 cut(s)	942
PleI	GAGTC	3 cut(s)	670, 928, 943
PpsI	GAGTC	3 cut(s)	670, 928, 943
PpuMI	RGGWCCY	1 cut(s)	817
Psp124BI	GAGCTC	1 cut(s)	629
Psp5II	RGGWCCY	1 cut(s)	817
PspN4I	GGNNCC	1 cut(s)	818
PspPI	GGNCC	3 cut(s)	421, 817, 1040
PspPPI	RGGWCCY	1 cut(s)	817
PvuI	CGATCG	1 cut(s)	942
RsaI	GTAC	6 cut(s)	365, 532, 659, 805, 890, 1224
RsaNI	GTAC	6 cut(s)	364, 531, 658, 804, 889, 1223
RseI	CAYNNNNRTG	5 cut(s)	81, 358, 443, 1097, 1325
SacI	GAGCTC	1 cut(s)	629
SaqAI	TTAA	2 cut(s)	552, 587
SatI	GCNGC	4 cut(s)	312, 315, 608, 615
Sau3AI	GATC	3 cut(s)	939, 1016, 1191
Sau96I	GGNCC	3 cut(s)	421, 817, 1040
SchI	GAGTC	3 cut(s)	671, 929, 943
SduI	GDGCHC	3 cut(s)	24, 629, 976
SfaNI	GCATC	8 cut(s)	353, 359, 462, 640, 684, 1124, 1262, 1329
SfcI	CTRYAG	1 cut(s)	618
SinI	GGWCC	1 cut(s)	817
SmiMI	CAYNNNNRTG	5 cut(s)	81, 358, 443, 1097, 1325
SmlI	CTYRAG	4 cut(s)	34, 779, 1052, 1145
SmoI	CTYRAG	4 cut(s)	34, 779, 1052, 1145
Sse9I	AATT	5 cut(s)	115, 170, 645, 954, 1158
SsiI	CCGC	1 cut(s)	1089
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	2 cut(s)	1080, 1293
SstI	GAGCTC	1 cut(s)	629
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	9 cut(s)	205, 238, 505, 622, 657, 834, 1000, 1215, 1385
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	3 cut(s)	938, 1190, 1238
TaqII	GACCGA	1 cut(s)	1114
TasI	AATT	5 cut(s)	115, 170, 645, 954, 1158
TatI	WGTACW	2 cut(s)	803, 888
TfiI	GAWTC	5 cut(s)	86, 866, 984, 1240, 1365
Tru1I	TTAA	2 cut(s)	552, 587
Tru9I	TTAA	2 cut(s)	552, 587
TscAI	CASTG	6 cut(s)	210, 363, 481, 508, 627, 1003
TseI	GCWGC	4 cut(s)	311, 314, 607, 614
TspDTI	ATGAA	4 cut(s)	58, 525, 879, 1258
TspRI	CASTG	6 cut(s)	210, 363, 481, 508, 627, 1003
VpaK11BI	GGWCC	1 cut(s)	817
XceI	RCATGY	1 cut(s)	231
XspI	CTAG	2 cut(s)	1080, 1293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.